Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 AC005618.4-201ENST00000625053 554 ntBASIC6.94□□□□□ -1.3
MSH6P52701 AC245100.4-204ENST00000635587 1555 ntTSL 5 BASIC6.94□□□□□ -1.3
MSH6P52701 LINC01277-201ENST00000419957 2398 ntTSL 2 BASIC6.93□□□□□ -1.3
MSH6P52701 LINC01951-201ENST00000377300 1925 ntTSL 2 BASIC6.93□□□□□ -1.3
MSH6P52701 NKIRAS1-209ENST00000614374 1612 ntAPPRIS P2 TSL 1 (best) BASIC6.93□□□□□ -1.3
MSH6P52701 ZNF83-202ENST00000536937 2726 ntAPPRIS P1 TSL 2 BASIC6.93□□□□□ -1.3
MSH6P52701 UNC79-203ENST00000553484 9100 ntTSL 5 BASIC6.93□□□□□ -1.3
MSH6P52701 ESRRG-206ENST00000366938 5274 ntAPPRIS P1 TSL 1 (best) BASIC6.93□□□□□ -1.3
MSH6P52701 ZNF410-211ENST00000555044 2601 ntAPPRIS P1 TSL 1 (best) BASIC6.93□□□□□ -1.3
MSH6P52701 LIMA1-215ENST00000552823 3254 ntAPPRIS ALT2 TSL 2 BASIC6.93□□□□□ -1.3
MSH6P52701 AC003973.3-201ENST00000624863 2822 ntBASIC6.93□□□□□ -1.3
MSH6P52701 FGF1-214ENST00000612258 3805 ntAPPRIS P1 TSL 1 (best) BASIC6.93□□□□□ -1.3
MSH6P52701 CNGA1-203ENST00000420489 2746 ntAPPRIS P3 TSL 2 BASIC6.93□□□□□ -1.3
MSH6P52701 AC007491.1-202ENST00000637961 1576 ntTSL 5 BASIC6.93□□□□□ -1.3
MSH6P52701 SMC2-203ENST00000374793 5909 ntAPPRIS P1 TSL 1 (best) BASIC6.93□□□□□ -1.3
MSH6P52701 AL358975.1-203ENST00000413352 2932 ntTSL 3 BASIC6.93□□□□□ -1.3
MSH6P52701 POMP-202ENST00000460403 1428 ntTSL 3 BASIC6.93□□□□□ -1.3
MSH6P52701 AP000808.1-201ENST00000512200 3252 ntTSL 2 BASIC6.93□□□□□ -1.3
MSH6P52701 HACD3-209ENST00000566511 1782 ntTSL 5 BASIC6.93□□□□□ -1.3
MSH6P52701 RPS29P9-201ENST00000440360 171 ntBASIC6.93□□□□□ -1.3
MSH6P52701 AC011276.1-201ENST00000469688 323 ntBASIC6.93□□□□□ -1.3
MSH6P52701 AC116562.1-201ENST00000485355 781 ntBASIC6.93□□□□□ -1.3
MSH6P52701 AC022133.1-201ENST00000490961 571 ntBASIC6.93□□□□□ -1.3
MSH6P52701 LINC01340-201ENST00000504012 724 ntTSL 3 BASIC6.93□□□□□ -1.3
MSH6P52701 OR5M11-201ENST00000528616 1020 ntAPPRIS P1 BASIC6.93□□□□□ -1.3
MSH6P52701 AC103876.1-201ENST00000568634 418 ntTSL 3 BASIC6.93□□□□□ -1.3
MSH6P52701 BNIP3P35-201ENST00000604530 490 ntBASIC6.93□□□□□ -1.3
MSH6P52701 AL139124.1-201ENST00000609123 421 ntBASIC6.93□□□□□ -1.3
MSH6P52701 AL121890.3-201ENST00000618494 516 ntBASIC6.93□□□□□ -1.3
MSH6P52701 SOX2-OT-218ENST00000498731 3576 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
MSH6P52701 DYNC1I2-201ENST00000340296 2589 ntAPPRIS P4 TSL 1 (best) BASIC6.92□□□□□ -1.3
MSH6P52701 KCNJ16-204ENST00000585558 4014 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
MSH6P52701 BNIP2-202ENST00000415213 1509 ntTSL 2 BASIC6.92□□□□□ -1.3
MSH6P52701 PSG9-202ENST00000270077 1705 ntAPPRIS P2 TSL 1 (best) BASIC6.92□□□□□ -1.3
MSH6P52701 SRSF11-202ENST00000370950 3784 ntAPPRIS P3 TSL 1 (best) BASIC6.92□□□□□ -1.3
MSH6P52701 CENPI-204ENST00000423383 2314 ntAPPRIS P3 TSL 5 BASIC6.92□□□□□ -1.3
MSH6P52701 MDN1-205ENST00000629399 17400 ntAPPRIS P1 TSL 1 (best) BASIC6.92□□□□□ -1.3
MSH6P52701 FAM72A-201ENST00000341209 1774 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
MSH6P52701 EMSY-204ENST00000524490 4015 ntTSL 2 BASIC6.92□□□□□ -1.3
MSH6P52701 CDK14-206ENST00000436577 4787 ntTSL 2 BASIC6.92□□□□□ -1.3
MSH6P52701 CHRM2-203ENST00000445907 5918 ntAPPRIS P1 TSL 1 (best) BASIC6.92□□□□□ -1.3
MSH6P52701 CENPI-201ENST00000372926 2375 ntAPPRIS ALT2 TSL 5 BASIC6.92□□□□□ -1.3
MSH6P52701 TCEANC-201ENST00000380600 2988 ntAPPRIS P1 TSL 3 BASIC6.92□□□□□ -1.3
MSH6P52701 LINC01844-201ENST00000432677 2237 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
MSH6P52701 AC016745.2-201ENST00000608834 3443 ntBASIC6.92□□□□□ -1.3
MSH6P52701 RN7SKP145-201ENST00000363291 303 ntBASIC6.92□□□□□ -1.3
MSH6P52701 RNA5SP509-201ENST00000364577 119 ntBASIC6.92□□□□□ -1.3
MSH6P52701 APOA2-201ENST00000367990 474 ntAPPRIS P1 TSL 1 (best) BASIC6.92□□□□□ -1.3
MSH6P52701 BANF2-202ENST00000377805 444 ntAPPRIS P1 TSL 1 (best) BASIC6.92□□□□□ -1.3
MSH6P52701 CABYR-204ENST00000399499 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC6.92□□□□□ -1.3
MSH6P52701 AL672277.1-201ENST00000420865 588 ntTSL 2 BASIC6.92□□□□□ -1.3
MSH6P52701 FABP7P1-201ENST00000424004 391 ntBASIC6.92□□□□□ -1.3
MSH6P52701 RPL23AP56-201ENST00000460778 453 ntBASIC6.92□□□□□ -1.3
MSH6P52701 AC108751.3-201ENST00000461814 1020 ntBASIC6.92□□□□□ -1.3
MSH6P52701 RPL7AP10-201ENST00000481016 791 ntBASIC6.92□□□□□ -1.3
MSH6P52701 RPSAP51-201ENST00000497462 645 ntBASIC6.92□□□□□ -1.3
MSH6P52701 MTCO1P35-201ENST00000515270 228 ntBASIC6.92□□□□□ -1.3
MSH6P52701 AC097173.2-201ENST00000518701 474 ntTSL 3 BASIC6.92□□□□□ -1.3
MSH6P52701 LINC02365-202ENST00000520280 607 ntTSL 3 BASIC6.92□□□□□ -1.3
MSH6P52701 AC022360.1-201ENST00000521058 340 ntBASIC6.92□□□□□ -1.3
MSH6P52701 AC087379.1-201ENST00000524613 993 ntTSL 5 BASIC6.92□□□□□ -1.3
MSH6P52701 LINC02319-201ENST00000555852 349 ntTSL 3 BASIC6.92□□□□□ -1.3
MSH6P52701 AC034229.5-201ENST00000624258 185 ntBASIC6.92□□□□□ -1.3
MSH6P52701 NCLP2-201ENST00000416078 1462 ntBASIC6.92□□□□□ -1.3
MSH6P52701 NRK-204ENST00000540278 1687 ntTSL 2 BASIC6.92□□□□□ -1.3
MSH6P52701 AL031320.2-201ENST00000591892 2079 ntTSL 5 BASIC6.92□□□□□ -1.3
MSH6P52701 CHMP1B2P-202ENST00000614414 6813 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
MSH6P52701 OR56B2P-202ENST00000641377 2453 ntBASIC6.92□□□□□ -1.3
MSH6P52701 RNF150-202ENST00000420921 3673 ntTSL 2 BASIC6.92□□□□□ -1.3
MSH6P52701 ZNF850-202ENST00000591344 7714 ntAPPRIS P3 TSL 1 (best) BASIC6.92□□□□□ -1.3
MSH6P52701 ARHGEF3-203ENST00000413728 3992 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
MSH6P52701 AL122126.1-201ENST00000546905 1318 ntBASIC6.92□□□□□ -1.3
MSH6P52701 PTPRT-201ENST00000356100 12480 ntAPPRIS ALT2 TSL 5 BASIC6.91□□□□□ -1.3
MSH6P52701 PTPRT-202ENST00000373184 12483 ntAPPRIS ALT2 TSL 5 BASIC6.91□□□□□ -1.3
MSH6P52701 PTPRT-203ENST00000373187 12453 ntAPPRIS P3 TSL 1 (best) BASIC6.91□□□□□ -1.3
MSH6P52701 CDH19-201ENST00000262150 6341 ntAPPRIS P1 TSL 1 (best) BASIC6.91□□□□□ -1.3
MSH6P52701 DAZ4-205ENST00000440066 1891 ntTSL 5 BASIC6.91□□□□□ -1.3
MSH6P52701 ST7-204ENST00000393444 2113 ntTSL 1 (best) BASIC6.91□□□□□ -1.3
MSH6P52701 ADGRL2-209ENST00000370727 5164 ntTSL 5 BASIC6.91□□□□□ -1.3
MSH6P52701 THRB-203ENST00000396671 7506 ntAPPRIS P2 TSL 5 BASIC6.91□□□□□ -1.3
MSH6P52701 TEX35-205ENST00000367643 802 ntAPPRIS ALT2 TSL 2 BASIC6.91□□□□□ -1.3
MSH6P52701 TRAV10-201ENST00000390432 379 ntAPPRIS P1 BASIC6.91□□□□□ -1.3
MSH6P52701 RNA5SP397-201ENST00000391323 118 ntBASIC6.91□□□□□ -1.3
MSH6P52701 SLC8A1-AS1-201ENST00000413479 800 ntTSL 5 BASIC6.91□□□□□ -1.3
MSH6P52701 AC114755.2-201ENST00000413520 361 ntBASIC6.91□□□□□ -1.3
MSH6P52701 HYALP1-201ENST00000417674 1279 ntBASIC6.91□□□□□ -1.3
MSH6P52701 ITCH-IT1-201ENST00000418598 208 ntTSL 3 BASIC6.91□□□□□ -1.3
MSH6P52701 BX276092.6-201ENST00000430476 250 ntBASIC6.91□□□□□ -1.3
MSH6P52701 NDUFB4P8-201ENST00000435351 367 ntBASIC6.91□□□□□ -1.3
MSH6P52701 LINC01754-201ENST00000437920 750 ntTSL 3 BASIC6.91□□□□□ -1.3
MSH6P52701 FAM237A-201ENST00000441223 773 ntAPPRIS P1 TSL 2 BASIC6.91□□□□□ -1.3
MSH6P52701 BX276092.8-201ENST00000455722 250 ntBASIC6.91□□□□□ -1.3
MSH6P52701 RPS24P16-201ENST00000497294 392 ntBASIC6.91□□□□□ -1.3
MSH6P52701 AC090058.1-201ENST00000498788 435 ntBASIC6.91□□□□□ -1.3
MSH6P52701 AC010401.3-201ENST00000576600 582 ntTSL 4 BASIC6.91□□□□□ -1.3
MSH6P52701 GMFG-202ENST00000594700 397 ntTSL 2 BASIC6.91□□□□□ -1.3
MSH6P52701 AC011626.1-201ENST00000604710 562 ntBASIC6.91□□□□□ -1.3
MSH6P52701 ADGRL3-217ENST00000514591 6297 ntAPPRIS P2 TSL 5 BASIC6.91□□□□□ -1.3
MSH6P52701 IL7R-201ENST00000303115 4626 ntAPPRIS P1 TSL 1 (best) BASIC6.91□□□□□ -1.3
MSH6P52701 ERCC6L-201ENST00000334463 4243 ntAPPRIS P2 TSL 1 (best) BASIC6.91□□□□□ -1.3
Retrieved 100 of 98,524 protein–RNA pairs in 71.7 ms