Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 AC006557.3-201ENST00000592926 517 ntTSL 3 BASIC6.81□□□□□ -1.32
LIG3P49916 AC036176.3-201ENST00000602456 418 ntBASIC6.81□□□□□ -1.32
LIG3P49916 AL445465.1-206ENST00000609544 528 ntTSL 5 BASIC6.81□□□□□ -1.32
LIG3P49916 AC138749.5-201ENST00000611461 208 ntBASIC6.81□□□□□ -1.32
LIG3P49916 AC025594.3-201ENST00000613068 790 ntBASIC6.81□□□□□ -1.32
LIG3P49916 AL121873.1-201ENST00000616013 524 ntBASIC6.81□□□□□ -1.32
LIG3P49916 AC006328.2-201ENST00000623198 397 ntBASIC6.81□□□□□ -1.32
LIG3P49916 AC124312.6-202ENST00000623624 418 ntBASIC6.81□□□□□ -1.32
LIG3P49916 AC012005.2-201ENST00000624333 397 ntBASIC6.81□□□□□ -1.32
LIG3P49916 CLUHP10-201ENST00000631979 980 ntBASIC6.81□□□□□ -1.32
LIG3P49916 SMARCA2-229ENST00000634781 1106 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
LIG3P49916 AC018793.2-201ENST00000639584 585 ntAPPRIS P1 BASIC6.81□□□□□ -1.32
LIG3P49916 AC018793.3-201ENST00000640805 585 ntAPPRIS P1 BASIC6.81□□□□□ -1.32
LIG3P49916 AC087565.3-203ENST00000641018 837 ntBASIC6.81□□□□□ -1.32
LIG3P49916 ZNF806-201ENST00000438300 1774 ntBASIC6.81□□□□□ -1.32
LIG3P49916 NCOA7-208ENST00000438495 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC6.81□□□□□ -1.32
LIG3P49916 NUP153-201ENST00000262077 5487 ntAPPRIS P3 TSL 1 (best) BASIC6.81□□□□□ -1.32
LIG3P49916 UGT2B10-201ENST00000265403 1931 ntAPPRIS P1 TSL 1 (best) BASIC6.81□□□□□ -1.32
LIG3P49916 ROR1-AS1-201ENST00000412349 1574 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
LIG3P49916 AQP4-205ENST00000581374 1586 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
LIG3P49916 LINC01524-201ENST00000428009 4390 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
LIG3P49916 WDR95P-201ENST00000425638 1542 ntBASIC6.81□□□□□ -1.32
LIG3P49916 CCT8P1-201ENST00000413611 1657 ntBASIC6.81□□□□□ -1.32
LIG3P49916 PMCHL2-201ENST00000415808 1841 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
LIG3P49916 NRP1-205ENST00000374823 3737 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
LIG3P49916 UTP15-208ENST00000543251 4922 ntTSL 2 BASIC6.8□□□□□ -1.32
LIG3P49916 AL592429.1-201ENST00000403909 1473 ntBASIC6.8□□□□□ -1.32
LIG3P49916 MSL3P1-202ENST00000440028 1468 ntBASIC6.8□□□□□ -1.32
LIG3P49916 EMB-205ENST00000514111 1475 ntAPPRIS ALT2 TSL 2 BASIC6.8□□□□□ -1.32
LIG3P49916 DEFB129-201ENST00000246105 698 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
LIG3P49916 RPL24P4-201ENST00000326586 421 ntBASIC6.8□□□□□ -1.32
LIG3P49916 C1orf162-201ENST00000343534 1107 ntAPPRIS P3 TSL 1 (best) BASIC6.8□□□□□ -1.32
LIG3P49916 FAM32BP-201ENST00000344033 333 ntBASIC6.8□□□□□ -1.32
LIG3P49916 OR5B21-201ENST00000360374 931 ntAPPRIS P1 BASIC6.8□□□□□ -1.32
LIG3P49916 MIR551B-201ENST00000384984 96 ntBASIC6.8□□□□□ -1.32
LIG3P49916 RNA5SP474-201ENST00000391234 90 ntBASIC6.8□□□□□ -1.32
LIG3P49916 CYCSP17-201ENST00000407870 315 ntBASIC6.8□□□□□ -1.32
LIG3P49916 SNORA11C-201ENST00000408532 129 ntBASIC6.8□□□□□ -1.32
LIG3P49916 AL035604.1-201ENST00000416481 531 ntTSL 3 BASIC6.8□□□□□ -1.32
LIG3P49916 MTCYBP38-201ENST00000417160 1123 ntBASIC6.8□□□□□ -1.32
LIG3P49916 AL359382.1-201ENST00000417838 426 ntTSL 5 BASIC6.8□□□□□ -1.32
LIG3P49916 LINC01820-201ENST00000418415 570 ntTSL 2 BASIC6.8□□□□□ -1.32
LIG3P49916 MYCBP2-AS2-201ENST00000428716 428 ntTSL 5 BASIC6.8□□□□□ -1.32
LIG3P49916 RPS10P21-201ENST00000430654 475 ntBASIC6.8□□□□□ -1.32
LIG3P49916 AL138733.2-201ENST00000431947 804 ntTSL 5 BASIC6.8□□□□□ -1.32
LIG3P49916 AL031123.1-201ENST00000432823 568 ntTSL 2 BASIC6.8□□□□□ -1.32
LIG3P49916 SEPT7P5-201ENST00000434048 306 ntBASIC6.8□□□□□ -1.32
LIG3P49916 AC008072.1-201ENST00000434254 824 ntBASIC6.8□□□□□ -1.32
LIG3P49916 AL163192.1-201ENST00000448858 708 ntTSL 5 BASIC6.8□□□□□ -1.32
LIG3P49916 SRGAP3-AS4-201ENST00000449023 377 ntTSL 2 BASIC6.8□□□□□ -1.32
LIG3P49916 AL591363.1-201ENST00000450091 483 ntBASIC6.8□□□□□ -1.32
LIG3P49916 AC112495.1-201ENST00000456037 756 ntTSL 5 BASIC6.8□□□□□ -1.32
LIG3P49916 AC010884.1-201ENST00000456519 642 ntTSL 3 BASIC6.8□□□□□ -1.32
LIG3P49916 AC019084.1-201ENST00000457337 432 ntBASIC6.8□□□□□ -1.32
LIG3P49916 AC117386.1-201ENST00000474444 606 ntTSL 4 BASIC6.8□□□□□ -1.32
LIG3P49916 MBNL1-217ENST00000485509 1023 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
LIG3P49916 RPL7P41-201ENST00000485823 957 ntBASIC6.8□□□□□ -1.32
LIG3P49916 RABGAP1L-218ENST00000489615 6821 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
LIG3P49916 RN7SL37P-201ENST00000490461 307 ntBASIC6.8□□□□□ -1.32
LIG3P49916 MBNL1-219ENST00000492948 1054 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
LIG3P49916 AC055758.1-201ENST00000494509 569 ntTSL 3 BASIC6.8□□□□□ -1.32
LIG3P49916 RN7SL612P-201ENST00000497704 295 ntBASIC6.8□□□□□ -1.32
LIG3P49916 EPGN-204ENST00000502358 312 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
LIG3P49916 EPGN-206ENST00000503098 339 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
LIG3P49916 AC092608.1-201ENST00000503505 267 ntTSL 2 BASIC6.8□□□□□ -1.32
LIG3P49916 EPGN-207ENST00000505212 285 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
LIG3P49916 AC021220.1-201ENST00000507445 630 ntBASIC6.8□□□□□ -1.32
LIG3P49916 EPGN-209ENST00000514968 312 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
LIG3P49916 AP003438.1-201ENST00000518704 435 ntTSL 3 BASIC6.8□□□□□ -1.32
LIG3P49916 AC087672.2-201ENST00000522498 429 ntTSL 2 BASIC6.8□□□□□ -1.32
LIG3P49916 AC103718.1-201ENST00000522667 683 ntTSL 3 BASIC6.8□□□□□ -1.32
LIG3P49916 AL139174.1-201ENST00000531489 886 ntBASIC6.8□□□□□ -1.32
LIG3P49916 AC117373.1-201ENST00000544036 392 ntTSL 3 BASIC6.8□□□□□ -1.32
LIG3P49916 RACGAP1-216ENST00000548961 387 ntTSL 3 BASIC6.8□□□□□ -1.32
LIG3P49916 AL157871.4-201ENST00000557226 385 ntTSL 2 BASIC6.8□□□□□ -1.32
LIG3P49916 AC136619.2-201ENST00000563361 631 ntBASIC6.8□□□□□ -1.32
LIG3P49916 AC009121.2-202ENST00000572706 505 ntTSL 3 BASIC6.8□□□□□ -1.32
LIG3P49916 DIAPH2-AS1-204ENST00000579945 974 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
LIG3P49916 AC024267.2-201ENST00000582737 417 ntBASIC6.8□□□□□ -1.32
LIG3P49916 AC009303.2-201ENST00000585381 1083 ntTSL 3 BASIC6.8□□□□□ -1.32
LIG3P49916 AC012593.1-208ENST00000587791 696 ntTSL 5 BASIC6.8□□□□□ -1.32
LIG3P49916 OSTC-205ENST00000613215 876 ntTSL 2 BASIC6.8□□□□□ -1.32
LIG3P49916 AL353726.1-201ENST00000614041 1000 ntBASIC6.8□□□□□ -1.32
LIG3P49916 Metazoa_SRP.179-201ENST00000619020 241 ntBASIC6.8□□□□□ -1.32
LIG3P49916 MIR6813-201ENST00000621638 56 ntBASIC6.8□□□□□ -1.32
LIG3P49916 AC092724.1-201ENST00000624623 3397 ntBASIC6.8□□□□□ -1.32
LIG3P49916 AC019226.1-201ENST00000625666 515 ntBASIC6.8□□□□□ -1.32
LIG3P49916 SNORA16A-202ENST00000628458 135 ntBASIC6.8□□□□□ -1.32
LIG3P49916 MYOCOS-203ENST00000637303 564 ntAPPRIS P5 TSL 5 BASIC6.8□□□□□ -1.32
LIG3P49916 AC134980.1-203ENST00000640541 570 ntTSL 4 BASIC6.8□□□□□ -1.32
LIG3P49916 SAMMSON-209ENST00000641222 1100 ntBASIC6.8□□□□□ -1.32
LIG3P49916 LINC01876-209ENST00000638047 1983 ntTSL 5 BASIC6.8□□□□□ -1.32
LIG3P49916 DPCR1-202ENST00000462446 5314 ntAPPRIS P2 TSL 5 BASIC6.8□□□□□ -1.32
LIG3P49916 MYPN-204ENST00000540630 5707 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
LIG3P49916 LINC00939-201ENST00000502479 4972 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
LIG3P49916 CYP4A22-206ENST00000619754 2351 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
LIG3P49916 BANK1-206ENST00000504592 3544 ntTSL 2 BASIC6.8□□□□□ -1.32
LIG3P49916 LIN7C-201ENST00000278193 4688 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
LIG3P49916 UGT2B26P-201ENST00000508672 1613 ntBASIC6.79□□□□□ -1.32
LIG3P49916 IFI16-202ENST00000340979 2732 ntTSL 5 BASIC6.79□□□□□ -1.32
Retrieved 100 of 98,524 protein–RNA pairs in 78.7 ms