Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 CYP3A43-205ENST00000415413 990 ntTSL 5 BASIC4.89□□□□□ -1.63
SOX3P41225 AC013470.3-201ENST00000420252 1194 ntBASIC4.89□□□□□ -1.63
SOX3P41225 MORF4L2-205ENST00000423833 717 ntTSL 5 BASIC4.89□□□□□ -1.63
SOX3P41225 AL359853.3-201ENST00000423879 544 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
SOX3P41225 NPM1P26-201ENST00000426339 738 ntBASIC4.89□□□□□ -1.63
SOX3P41225 MAGI2-AS3-204ENST00000426835 738 ntTSL 3 BASIC4.89□□□□□ -1.63
SOX3P41225 HNRNPA3P4-201ENST00000427514 803 ntBASIC4.89□□□□□ -1.63
SOX3P41225 LINC01789-201ENST00000443123 860 ntTSL 5 BASIC4.89□□□□□ -1.63
SOX3P41225 AL139121.1-201ENST00000445647 244 ntTSL 2 BASIC4.89□□□□□ -1.63
SOX3P41225 AC012512.1-201ENST00000446594 718 ntBASIC4.89□□□□□ -1.63
SOX3P41225 AP000797.2-201ENST00000475768 606 ntBASIC4.89□□□□□ -1.63
SOX3P41225 AC004815.1-201ENST00000484185 331 ntBASIC4.89□□□□□ -1.63
SOX3P41225 RPL15P21-201ENST00000495592 567 ntBASIC4.89□□□□□ -1.63
SOX3P41225 AC105460.2-202ENST00000502936 825 ntTSL 2 BASIC4.89□□□□□ -1.63
SOX3P41225 AC112206.2-204ENST00000504068 793 ntTSL 3 BASIC4.89□□□□□ -1.63
SOX3P41225 LINC02488-201ENST00000504287 652 ntTSL 2 BASIC4.89□□□□□ -1.63
SOX3P41225 AC093763.2-201ENST00000505334 1223 ntBASIC4.89□□□□□ -1.63
SOX3P41225 OR5M14P-201ENST00000506803 618 ntBASIC4.89□□□□□ -1.63
SOX3P41225 AC097515.1-202ENST00000511818 371 ntTSL 3 BASIC4.89□□□□□ -1.63
SOX3P41225 MSC-AS1-205ENST00000519068 569 ntTSL 3 BASIC4.89□□□□□ -1.63
SOX3P41225 AC021733.1-201ENST00000519786 325 ntTSL 3 BASIC4.89□□□□□ -1.63
SOX3P41225 NRG1-IT1-201ENST00000520444 758 ntTSL 3 BASIC4.89□□□□□ -1.63
SOX3P41225 CPSF7-220ENST00000541963 549 ntTSL 4 BASIC4.89□□□□□ -1.63
SOX3P41225 AC007527.1-202ENST00000543347 382 ntTSL 3 BASIC4.89□□□□□ -1.63
SOX3P41225 AC125612.1-201ENST00000547580 377 ntBASIC4.89□□□□□ -1.63
SOX3P41225 AC010761.5-201ENST00000579468 287 ntTSL 3 BASIC4.89□□□□□ -1.63
SOX3P41225 AC005972.3-201ENST00000606304 481 ntBASIC4.89□□□□□ -1.63
SOX3P41225 AC073575.2-201ENST00000614212 627 ntBASIC4.89□□□□□ -1.63
SOX3P41225 AC018445.2-201ENST00000622987 260 ntBASIC4.89□□□□□ -1.63
SOX3P41225 AP003400.3-201ENST00000624904 346 ntBASIC4.89□□□□□ -1.63
SOX3P41225 WDR75-207ENST00000631047 270 ntTSL 5 BASIC4.89□□□□□ -1.63
SOX3P41225 ASAH1-224ENST00000636269 685 ntTSL 3 BASIC4.89□□□□□ -1.63
SOX3P41225 BMPR1APS1-201ENST00000403332 1598 ntBASIC4.89□□□□□ -1.63
SOX3P41225 AC006484.1-201ENST00000435086 1884 ntBASIC4.89□□□□□ -1.63
SOX3P41225 UGP2-229ENST00000613823 1858 ntAPPRIS ALT1 TSL 5 BASIC4.89□□□□□ -1.63
SOX3P41225 ZEB1-219ENST00000560721 3368 ntAPPRIS ALT2 TSL 2 BASIC4.89□□□□□ -1.63
SOX3P41225 ERVFRD-3-201ENST00000578561 1617 ntBASIC4.89□□□□□ -1.63
SOX3P41225 FAM46D-202ENST00000538312 3106 ntAPPRIS P1 TSL 2 BASIC4.89□□□□□ -1.63
SOX3P41225 HERC1-201ENST00000443617 15137 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
SOX3P41225 SPATA1-206ENST00000490879 2888 ntAPPRIS P1 TSL 5 BASIC4.89□□□□□ -1.63
SOX3P41225 OR10AB1P-202ENST00000641219 1686 ntBASIC4.89□□□□□ -1.63
SOX3P41225 A1CF-205ENST00000374001 9221 ntAPPRIS ALT1 TSL 5 BASIC4.89□□□□□ -1.63
SOX3P41225 C2CD6-202ENST00000439140 5512 ntAPPRIS ALT2 TSL 1 (best) BASIC4.89□□□□□ -1.63
SOX3P41225 TNRC6B-206ENST00000454349 18279 ntAPPRIS ALT2 TSL 2 BASIC4.88□□□□□ -1.63
SOX3P41225 OBSCN-214ENST00000636875 23907 ntTSL 5 BASIC4.88□□□□□ -1.63
SOX3P41225 KIAA1328-202ENST00000586135 1863 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
SOX3P41225 PALMD-203ENST00000605497 1942 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
SOX3P41225 OR2L13-202ENST00000641714 1948 ntAPPRIS P1 BASIC4.88□□□□□ -1.63
SOX3P41225 MYO3A-203ENST00000376302 2723 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
SOX3P41225 OR4C11-201ENST00000302231 1045 ntAPPRIS P1 BASIC4.88□□□□□ -1.63
SOX3P41225 LINC00474-201ENST00000374014 769 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
SOX3P41225 PAGE2B-202ENST00000374974 456 ntTSL 5 BASIC4.88□□□□□ -1.63
SOX3P41225 OR2J2-202ENST00000377167 1272 ntAPPRIS P1 BASIC4.88□□□□□ -1.63
SOX3P41225 MRM2-202ENST00000407040 582 ntTSL 3 BASIC4.88□□□□□ -1.63
SOX3P41225 SLC19A3-202ENST00000409287 644 ntTSL 3 BASIC4.88□□□□□ -1.63
SOX3P41225 AC003975.1-201ENST00000411856 837 ntTSL 3 BASIC4.88□□□□□ -1.63
SOX3P41225 SVIL-AS1-202ENST00000414457 1243 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
SOX3P41225 AL583785.1-201ENST00000428006 512 ntTSL 2 BASIC4.88□□□□□ -1.63
SOX3P41225 AL050338.2-202ENST00000431609 956 ntTSL 2 BASIC4.88□□□□□ -1.63
SOX3P41225 ARPP21-215ENST00000432682 1015 ntTSL 5 BASIC4.88□□□□□ -1.63
SOX3P41225 RPL12P18-201ENST00000437175 325 ntBASIC4.88□□□□□ -1.63
SOX3P41225 RPL31P20-201ENST00000449593 360 ntBASIC4.88□□□□□ -1.63
SOX3P41225 AC105918.1-201ENST00000474399 838 ntBASIC4.88□□□□□ -1.63
SOX3P41225 AC022336.1-201ENST00000475510 337 ntBASIC4.88□□□□□ -1.63
SOX3P41225 CREM-238ENST00000488741 651 ntTSL 2 BASIC4.88□□□□□ -1.63
SOX3P41225 AC069304.1-201ENST00000491593 704 ntBASIC4.88□□□□□ -1.63
SOX3P41225 NADK2-AS1-201ENST00000501794 720 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
SOX3P41225 RPS4XP20-201ENST00000505751 772 ntBASIC4.88□□□□□ -1.63
SOX3P41225 WDYHV1-203ENST00000518125 880 ntTSL 2 BASIC4.88□□□□□ -1.63
SOX3P41225 LINC00535-203ENST00000520096 790 ntTSL 3 BASIC4.88□□□□□ -1.63
SOX3P41225 LINC01493-201ENST00000530102 460 ntTSL 5 BASIC4.88□□□□□ -1.63
SOX3P41225 APPL2-203ENST00000546731 684 ntTSL 2 BASIC4.88□□□□□ -1.63
SOX3P41225 AC144548.2-201ENST00000550231 946 ntTSL 3 BASIC4.88□□□□□ -1.63
SOX3P41225 PCED1B-AS1-210ENST00000552975 378 ntTSL 2 BASIC4.88□□□□□ -1.63
SOX3P41225 AL161757.4-204ENST00000557136 834 ntTSL 3 BASIC4.88□□□□□ -1.63
SOX3P41225 AC005757.1-201ENST00000591432 472 ntTSL 4 BASIC4.88□□□□□ -1.63
SOX3P41225 AC092474.3-201ENST00000603022 568 ntBASIC4.88□□□□□ -1.63
SOX3P41225 AC211433.2-201ENST00000608433 387 ntBASIC4.88□□□□□ -1.63
SOX3P41225 AL121612.2-201ENST00000612261 482 ntBASIC4.88□□□□□ -1.63
SOX3P41225 ZNF75A-210ENST00000617839 1225 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
SOX3P41225 AC090527.3-201ENST00000619041 548 ntBASIC4.88□□□□□ -1.63
SOX3P41225 AC099654.6-201ENST00000636487 512 ntBASIC4.88□□□□□ -1.63
SOX3P41225 PNLIPRP3-201ENST00000369230 2354 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
SOX3P41225 ZNF525-202ENST00000474037 3890 ntAPPRIS P1 TSL 5 BASIC4.88□□□□□ -1.63
SOX3P41225 C5orf42-201ENST00000425232 11199 ntAPPRIS P2 TSL 5 BASIC4.88□□□□□ -1.63
SOX3P41225 RNMT-202ENST00000383314 6250 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
SOX3P41225 NCOA7-202ENST00000368357 5521 ntAPPRIS P3 TSL 1 (best) BASIC4.88□□□□□ -1.63
SOX3P41225 IGF2BP3-218ENST00000619562 2126 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
SOX3P41225 OR2AT4-203ENST00000641541 8795 ntAPPRIS P1 BASIC4.88□□□□□ -1.63
SOX3P41225 INPP4B-201ENST00000262992 3741 ntAPPRIS P1 TSL 5 BASIC4.88□□□□□ -1.63
SOX3P41225 OR4K1-203ENST00000641429 1358 ntAPPRIS P1 BASIC4.88□□□□□ -1.63
SOX3P41225 AC100778.3-201ENST00000580060 1750 ntBASIC4.88□□□□□ -1.63
SOX3P41225 Z94721.2-201ENST00000609590 5310 ntTSL 2 BASIC4.88□□□□□ -1.63
SOX3P41225 SEC31A-201ENST00000264405 3447 ntTSL 2 BASIC4.88□□□□□ -1.63
SOX3P41225 KMO-203ENST00000366558 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC4.88□□□□□ -1.63
SOX3P41225 IL1RAPL1-202ENST00000378993 3667 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
SOX3P41225 CASP1-208ENST00000527979 1521 ntTSL 5 BASIC4.87□□□□□ -1.63
SOX3P41225 ZNF733P-202ENST00000444809 1573 ntBASIC4.87□□□□□ -1.63
SOX3P41225 ZNF534-202ENST00000332323 2086 ntAPPRIS P4 TSL 1 (best) BASIC4.87□□□□□ -1.63
SOX3P41225 TCF4-281ENST00000636822 7640 ntTSL 5 BASIC4.87□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 93.4 ms