Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 STS-201ENST00000217961 6521 ntAPPRIS P1 TSL 1 (best) BASIC8.08□□□□□ -1.12
CUX1P39880 ALS2CR12-203ENST00000405148 2013 ntAPPRIS P3 TSL 5 BASIC8.08□□□□□ -1.12
CUX1P39880 TMEM68-209ENST00000521229 2400 ntTSL 1 (best) BASIC8.08□□□□□ -1.12
CUX1P39880 ANKRD26P1-204ENST00000571006 4741 ntTSL 1 (best) BASIC8.07□□□□□ -1.12
CUX1P39880 SEMA3A-201ENST00000265362 8225 ntAPPRIS P1 TSL 1 (best) BASIC8.07□□□□□ -1.12
CUX1P39880 ZFRP1-201ENST00000457579 2970 ntBASIC8.07□□□□□ -1.12
CUX1P39880 LMO3-209ENST00000447609 3365 ntAPPRIS P1 TSL 1 (best) BASIC8.07□□□□□ -1.12
CUX1P39880 SYTL2-204ENST00000389958 1943 ntTSL 2 BASIC8.07□□□□□ -1.12
CUX1P39880 AL354696.2-201ENST00000619407 1910 ntTSL 2 BASIC8.07□□□□□ -1.12
CUX1P39880 SLC1A2-202ENST00000395750 11538 ntAPPRIS ALT1 TSL 1 (best) BASIC8.07□□□□□ -1.12
CUX1P39880 MIR134-201ENST00000385258 73 ntBASIC8.07□□□□□ -1.12
CUX1P39880 OR6C69P-201ENST00000394268 893 ntBASIC8.07□□□□□ -1.12
CUX1P39880 LINC01341-201ENST00000419361 552 ntTSL 2 BASIC8.07□□□□□ -1.12
CUX1P39880 LINC02096-201ENST00000445035 953 ntTSL 5 BASIC8.07□□□□□ -1.12
CUX1P39880 LINC02527-201ENST00000449069 762 ntTSL 3 BASIC8.07□□□□□ -1.12
CUX1P39880 FPGT-203ENST00000467578 601 ntTSL 2 BASIC8.07□□□□□ -1.12
CUX1P39880 AL136537.1-202ENST00000501725 430 ntTSL 3 BASIC8.07□□□□□ -1.12
CUX1P39880 IGHVIII-2-1-201ENST00000518843 291 ntBASIC8.07□□□□□ -1.12
CUX1P39880 AC079089.1-204ENST00000530194 572 ntTSL 2 BASIC8.07□□□□□ -1.12
CUX1P39880 LINC01198-207ENST00000598084 881 ntTSL 5 BASIC8.07□□□□□ -1.12
CUX1P39880 HMGN2-210ENST00000619352 1148 ntAPPRIS P1 TSL 1 (best) BASIC8.07□□□□□ -1.12
CUX1P39880 C6orf89-204ENST00000480824 6861 ntAPPRIS ALT2 TSL 1 (best) BASIC8.07□□□□□ -1.12
CUX1P39880 LINGO2-201ENST00000308675 3031 ntAPPRIS P1 TSL 5 BASIC8.07□□□□□ -1.12
CUX1P39880 AC093671.1-201ENST00000624981 2929 ntBASIC8.07□□□□□ -1.12
CUX1P39880 FRMD7-202ENST00000370879 2864 ntTSL 1 (best) BASIC8.06□□□□□ -1.12
CUX1P39880 GSTCD-202ENST00000394728 2416 ntAPPRIS P1 TSL 5 BASIC8.06□□□□□ -1.12
CUX1P39880 MECOM-203ENST00000460814 3374 ntTSL 1 (best) BASIC8.06□□□□□ -1.12
CUX1P39880 EIF4E-203ENST00000450253 11523 ntAPPRIS P1 TSL 1 (best) BASIC8.06□□□□□ -1.12
CUX1P39880 RN7SKP263-201ENST00000411194 309 ntBASIC8.06□□□□□ -1.12
CUX1P39880 AL157378.1-201ENST00000424506 265 ntTSL 5 BASIC8.06□□□□□ -1.12
CUX1P39880 AL449043.1-202ENST00000427318 582 ntTSL 1 (best) BASIC8.06□□□□□ -1.12
CUX1P39880 AL034380.1-201ENST00000448791 306 ntTSL 3 BASIC8.06□□□□□ -1.12
CUX1P39880 AL645608.2-201ENST00000458555 471 ntTSL 2 BASIC8.06□□□□□ -1.12
CUX1P39880 IGKV2-30-201ENST00000468494 390 ntAPPRIS P1 BASIC8.06□□□□□ -1.12
CUX1P39880 LINC00500-201ENST00000515860 539 ntTSL 4 BASIC8.06□□□□□ -1.12
CUX1P39880 AL110505.1-201ENST00000557062 522 ntTSL 3 BASIC8.06□□□□□ -1.12
CUX1P39880 LINC01633-201ENST00000566476 1091 ntTSL 1 (best) BASIC8.06□□□□□ -1.12
CUX1P39880 AL133338.2-201ENST00000604292 736 ntBASIC8.06□□□□□ -1.12
CUX1P39880 LINC00904-201ENST00000604453 471 ntTSL 2 BASIC8.06□□□□□ -1.12
CUX1P39880 NSF-206ENST00000575068 2667 ntTSL 2 BASIC8.06□□□□□ -1.12
CUX1P39880 PTPN3-202ENST00000374541 6703 ntAPPRIS P1 TSL 5 BASIC8.06□□□□□ -1.12
CUX1P39880 AC007620.2-201ENST00000600539 1697 ntTSL 5 BASIC8.06□□□□□ -1.12
CUX1P39880 MS4A1-207ENST00000532073 2560 ntTSL 1 (best) BASIC8.06□□□□□ -1.12
CUX1P39880 BDNF-211ENST00000439476 4532 ntAPPRIS P1 TSL 1 (best) BASIC8.05□□□□□ -1.12
CUX1P39880 AC133552.1-201ENST00000569988 4007 ntBASIC8.05□□□□□ -1.12
CUX1P39880 GPR85-201ENST00000297146 5079 ntAPPRIS P1 TSL 1 (best) BASIC8.05□□□□□ -1.12
CUX1P39880 AC120338.1-201ENST00000625074 1541 ntBASIC8.05□□□□□ -1.12
CUX1P39880 ZNF230-201ENST00000429154 4115 ntAPPRIS P1 TSL 1 (best) BASIC8.05□□□□□ -1.12
CUX1P39880 MCF2L2-202ENST00000414362 3031 ntTSL 2 BASIC8.05□□□□□ -1.12
CUX1P39880 TET1-201ENST00000373644 9288 ntAPPRIS P1 TSL 1 (best) BASIC8.05□□□□□ -1.12
CUX1P39880 AL159174.1-202ENST00000425588 442 ntTSL 3 BASIC8.05□□□□□ -1.12
CUX1P39880 AL136084.2-202ENST00000433997 353 ntTSL 2 BASIC8.05□□□□□ -1.12
CUX1P39880 MTND2P40-201ENST00000436718 841 ntBASIC8.05□□□□□ -1.12
CUX1P39880 RPL23AP24-201ENST00000458203 385 ntBASIC8.05□□□□□ -1.12
CUX1P39880 TATDN1-202ENST00000517678 815 ntTSL 3 BASIC8.05□□□□□ -1.12
CUX1P39880 IGHVIII-47-1-201ENST00000518187 331 ntBASIC8.05□□□□□ -1.12
CUX1P39880 CARD8-211ENST00000519332 500 ntTSL 1 (best) BASIC8.05□□□□□ -1.12
CUX1P39880 TATDN1-206ENST00000519548 889 ntTSL 1 (best) BASIC8.05□□□□□ -1.12
CUX1P39880 AC124067.3-201ENST00000522643 847 ntTSL 3 BASIC8.05□□□□□ -1.12
CUX1P39880 AC090692.1-202ENST00000525363 607 ntTSL 4 BASIC8.05□□□□□ -1.12
CUX1P39880 AC084783.1-201ENST00000565846 910 ntBASIC8.05□□□□□ -1.12
CUX1P39880 AC090371.2-205ENST00000580366 490 ntTSL 3 BASIC8.05□□□□□ -1.12
CUX1P39880 AC018695.5-201ENST00000605872 315 ntBASIC8.05□□□□□ -1.12
CUX1P39880 AC105411.1-201ENST00000568776 1470 ntTSL 4 BASIC8.05□□□□□ -1.12
CUX1P39880 FAT2-201ENST00000261800 14534 ntAPPRIS P1 TSL 1 (best) BASIC8.05□□□□□ -1.12
CUX1P39880 ST6GALNAC3-201ENST00000328299 6861 ntAPPRIS P1 TSL 1 (best) BASIC8.05□□□□□ -1.12
CUX1P39880 KAT6A-202ENST00000396930 9285 ntAPPRIS P3 TSL 5 BASIC8.05□□□□□ -1.12
CUX1P39880 SAMD9L-202ENST00000411955 5831 ntAPPRIS P1 TSL 5 BASIC8.05□□□□□ -1.12
CUX1P39880 MAPRE2-202ENST00000413393 4173 ntAPPRIS ALT1 TSL 5 BASIC8.05□□□□□ -1.12
CUX1P39880 TCEANC-201ENST00000380600 2988 ntAPPRIS P1 TSL 3 BASIC8.05□□□□□ -1.12
CUX1P39880 LINC01239-202ENST00000436786 2347 ntTSL 2 BASIC8.05□□□□□ -1.12
CUX1P39880 CACNA1E-209ENST00000621551 14886 ntAPPRIS ALT2 TSL 5 BASIC8.05□□□□□ -1.12
CUX1P39880 CRISP1-201ENST00000329411 1709 ntTSL 5 BASIC8.05□□□□□ -1.12
CUX1P39880 ADGRL3-205ENST00000506746 4935 ntAPPRIS ALT2 TSL 5 BASIC8.05□□□□□ -1.12
CUX1P39880 NAT2-201ENST00000286479 1322 ntAPPRIS P1 TSL 1 (best) BASIC8.05□□□□□ -1.12
CUX1P39880 DNAL1-202ENST00000553645 8404 ntAPPRIS P1 TSL 1 (best) BASIC8.04□□□□□ -1.12
CUX1P39880 OR4K17-201ENST00000315543 1032 ntBASIC8.04□□□□□ -1.12
CUX1P39880 SNORA37-201ENST00000384504 129 ntBASIC8.04□□□□□ -1.12
CUX1P39880 AL591848.1-201ENST00000413092 322 ntBASIC8.04□□□□□ -1.12
CUX1P39880 AL354863.1-204ENST00000436430 556 ntTSL 3 BASIC8.04□□□□□ -1.12
CUX1P39880 AC136489.1-201ENST00000438181 717 ntTSL 3 BASIC8.04□□□□□ -1.12
CUX1P39880 RPL7P32-201ENST00000457119 744 ntBASIC8.04□□□□□ -1.12
CUX1P39880 AL035454.1-201ENST00000470758 433 ntTSL 3 BASIC8.04□□□□□ -1.12
CUX1P39880 AC007016.1-201ENST00000512110 244 ntBASIC8.04□□□□□ -1.12
CUX1P39880 AL161757.4-204ENST00000557136 834 ntTSL 3 BASIC8.04□□□□□ -1.12
CUX1P39880 AC093249.4-201ENST00000564755 259 ntBASIC8.04□□□□□ -1.12
CUX1P39880 AC007496.1-201ENST00000565641 739 ntTSL 3 BASIC8.04□□□□□ -1.12
CUX1P39880 VDAC1P8-204ENST00000589489 997 ntTSL 5 BASIC8.04□□□□□ -1.12
CUX1P39880 AL121932.1-201ENST00000605542 214 ntBASIC8.04□□□□□ -1.12
CUX1P39880 AC092683.1-209ENST00000612970 1105 ntTSL 5 BASIC8.04□□□□□ -1.12
CUX1P39880 PCDH15-215ENST00000409834 5401 ntTSL 5 BASIC8.04□□□□□ -1.12
CUX1P39880 TCF7L2-217ENST00000536810 3953 ntTSL 1 (best) BASIC8.04□□□□□ -1.12
CUX1P39880 PCLO-203ENST00000423517 17147 ntTSL 5 BASIC8.04□□□□□ -1.12
CUX1P39880 SGCD-202ENST00000435422 9755 ntAPPRIS ALT1 TSL 1 (best) BASIC8.04□□□□□ -1.12
CUX1P39880 OR14L1P-202ENST00000641545 3009 ntBASIC8.04□□□□□ -1.12
CUX1P39880 AC025428.2-201ENST00000435367 2672 ntTSL 1 (best) BASIC8.04□□□□□ -1.12
CUX1P39880 CYBB-201ENST00000378588 4324 ntAPPRIS P1 TSL 1 (best) BASIC8.04□□□□□ -1.12
CUX1P39880 PCAT19-201ENST00000588495 3472 ntTSL 1 (best) BASIC8.04□□□□□ -1.12
CUX1P39880 BDNF-210ENST00000438929 4059 ntTSL 1 (best) BASIC8.04□□□□□ -1.12
CUX1P39880 RFFL-202ENST00000394597 4227 ntAPPRIS P1 TSL 1 (best) BASIC8.04□□□□□ -1.12
Retrieved 100 of 98,524 protein–RNA pairs in 97.6 ms