Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 C6orf10-207ENST00000533191 2170 ntAPPRIS ALT2 TSL 1 (best) BASIC5.91□□□□□ -1.46
SCN4AP35499 LTA4H-202ENST00000413268 1908 ntTSL 2 BASIC5.9□□□□□ -1.46
SCN4AP35499 FRYL-209ENST00000506685 1940 ntTSL 5 BASIC5.9□□□□□ -1.46
SCN4AP35499 AC087257.1-201ENST00000506925 2639 ntTSL 4 BASIC5.9□□□□□ -1.46
SCN4AP35499 AMY2A-201ENST00000414303 1634 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
SCN4AP35499 ZEB1-202ENST00000361642 5990 ntAPPRIS ALT2 TSL 1 (best) BASIC5.9□□□□□ -1.46
SCN4AP35499 NUP37-201ENST00000251074 1203 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
SCN4AP35499 AC003975.1-201ENST00000411856 837 ntTSL 3 BASIC5.9□□□□□ -1.46
SCN4AP35499 AC098872.1-201ENST00000413304 543 ntTSL 3 BASIC5.9□□□□□ -1.46
SCN4AP35499 DPYD-AS1-201ENST00000422980 533 ntTSL 3 BASIC5.9□□□□□ -1.46
SCN4AP35499 AP002812.1-201ENST00000495378 474 ntBASIC5.9□□□□□ -1.46
SCN4AP35499 GABARAPL1-212ENST00000543602 653 ntTSL 5 BASIC5.9□□□□□ -1.46
SCN4AP35499 AC079907.2-202ENST00000547004 423 ntTSL 2 BASIC5.9□□□□□ -1.46
SCN4AP35499 AC068831.4-201ENST00000556118 109 ntBASIC5.9□□□□□ -1.46
SCN4AP35499 AC011626.1-201ENST00000604710 562 ntBASIC5.9□□□□□ -1.46
SCN4AP35499 RNA5SP439-201ENST00000617595 124 ntBASIC5.9□□□□□ -1.46
SCN4AP35499 KCNJ16-202ENST00000392670 4009 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
SCN4AP35499 N4BP2L2-IT2-201ENST00000629393 4890 ntBASIC5.9□□□□□ -1.46
SCN4AP35499 STS-201ENST00000217961 6521 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
SCN4AP35499 SPATA17-201ENST00000366933 5818 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
SCN4AP35499 FOXP2-202ENST00000360232 1412 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
SCN4AP35499 GABRA1-215ENST00000636573 2262 ntAPPRIS P1 TSL 5 BASIC5.9□□□□□ -1.46
SCN4AP35499 MTPAP-201ENST00000263063 5601 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
SCN4AP35499 KIAA1328-202ENST00000586135 1863 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
SCN4AP35499 TRAPPC13-201ENST00000231526 2715 ntAPPRIS ALT1 TSL 5 BASIC5.9□□□□□ -1.46
SCN4AP35499 SLC16A9-201ENST00000395347 3646 ntAPPRIS P1 TSL 2 BASIC5.9□□□□□ -1.46
SCN4AP35499 MATR3-230ENST00000394800 5513 ntTSL 5 BASIC5.9□□□□□ -1.47
SCN4AP35499 ZNF107-205ENST00000613690 5589 ntAPPRIS ALT2 TSL 5 BASIC5.9□□□□□ -1.47
SCN4AP35499 DYNC1I2-201ENST00000340296 2589 ntAPPRIS P4 TSL 1 (best) BASIC5.9□□□□□ -1.47
SCN4AP35499 NRK-204ENST00000540278 1687 ntTSL 2 BASIC5.9□□□□□ -1.47
SCN4AP35499 ARHGAP24-201ENST00000264343 4572 ntTSL 1 (best) BASIC5.9□□□□□ -1.47
SCN4AP35499 RN7SKP185-201ENST00000362813 326 ntBASIC5.9□□□□□ -1.47
SCN4AP35499 RN7SKP153-201ENST00000365026 316 ntBASIC5.9□□□□□ -1.47
SCN4AP35499 RNA5SP44-201ENST00000410446 133 ntBASIC5.9□□□□□ -1.47
SCN4AP35499 GPS2P1-201ENST00000411761 986 ntBASIC5.9□□□□□ -1.47
SCN4AP35499 RPL21P108-201ENST00000413857 481 ntBASIC5.9□□□□□ -1.47
SCN4AP35499 GAPDHP49-201ENST00000421421 961 ntBASIC5.9□□□□□ -1.47
SCN4AP35499 LINC00375-201ENST00000433074 601 ntTSL 5 BASIC5.9□□□□□ -1.47
SCN4AP35499 Z95327.1-201ENST00000446082 482 ntBASIC5.9□□□□□ -1.47
SCN4AP35499 FO393401.1-201ENST00000453914 600 ntTSL 3 BASIC5.9□□□□□ -1.47
SCN4AP35499 RPSAP51-201ENST00000497462 645 ntBASIC5.9□□□□□ -1.47
SCN4AP35499 AC015795.1-201ENST00000513669 327 ntBASIC5.9□□□□□ -1.47
SCN4AP35499 AC087379.1-201ENST00000524613 993 ntTSL 5 BASIC5.9□□□□□ -1.47
SCN4AP35499 C15orf41-205ENST00000563167 772 ntTSL 3 BASIC5.9□□□□□ -1.47
SCN4AP35499 AC103876.1-201ENST00000568634 418 ntTSL 3 BASIC5.9□□□□□ -1.47
SCN4AP35499 AC115286.1-201ENST00000604298 434 ntBASIC5.9□□□□□ -1.47
SCN4AP35499 AC005392.3-201ENST00000607109 459 ntTSL 2 BASIC5.9□□□□□ -1.47
SCN4AP35499 HMGN2-210ENST00000619352 1148 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.47
SCN4AP35499 AC004232.3-201ENST00000622977 525 ntBASIC5.9□□□□□ -1.47
SCN4AP35499 DST-205ENST00000370765 8999 ntTSL 1 (best) BASIC5.9□□□□□ -1.47
SCN4AP35499 TEAD1-203ENST00000526600 8477 ntTSL 1 (best) BASIC5.9□□□□□ -1.47
SCN4AP35499 NFATC3-201ENST00000329524 6144 ntTSL 1 (best) BASIC5.9□□□□□ -1.47
SCN4AP35499 CLVS1-205ENST00000519846 3622 ntAPPRIS P1 TSL 5 BASIC5.89□□□□□ -1.47
SCN4AP35499 CARF-208ENST00000428585 2513 ntTSL 2 BASIC5.89□□□□□ -1.47
SCN4AP35499 MTERF1-201ENST00000351870 1997 ntAPPRIS P3 TSL 1 (best) BASIC5.89□□□□□ -1.47
SCN4AP35499 PATE4-201ENST00000457514 1983 ntAPPRIS P2 TSL 2 BASIC5.89□□□□□ -1.47
SCN4AP35499 AC006994.2-202ENST00000639259 3828 ntTSL 5 BASIC5.89□□□□□ -1.47
SCN4AP35499 BNIP2-202ENST00000415213 1509 ntTSL 2 BASIC5.89□□□□□ -1.47
SCN4AP35499 LMO3-225ENST00000541295 3498 ntTSL 2 BASIC5.89□□□□□ -1.47
SCN4AP35499 SLC1A3-201ENST00000265113 4170 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
SCN4AP35499 ZNF26-202ENST00000534834 4853 ntAPPRIS ALT2 TSL 2 BASIC5.89□□□□□ -1.47
SCN4AP35499 MAPK10-263ENST00000641052 4307 ntBASIC5.89□□□□□ -1.47
SCN4AP35499 CCNYL2-202ENST00000637719 3311 ntTSL 2 BASIC5.89□□□□□ -1.47
SCN4AP35499 SNX13-213ENST00000611725 6817 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
SCN4AP35499 RPL32P23-201ENST00000397237 405 ntBASIC5.89□□□□□ -1.47
SCN4AP35499 NRBF2P2-201ENST00000413087 861 ntBASIC5.89□□□□□ -1.47
SCN4AP35499 AL929472.2-201ENST00000419993 481 ntTSL 5 BASIC5.89□□□□□ -1.47
SCN4AP35499 AL136979.1-201ENST00000421645 1120 ntTSL 3 BASIC5.89□□□□□ -1.47
SCN4AP35499 GAS5-208ENST00000425771 242 ntTSL 3 BASIC5.89□□□□□ -1.47
SCN4AP35499 AL450472.1-201ENST00000439434 405 ntTSL 2 BASIC5.89□□□□□ -1.47
SCN4AP35499 AP001596.1-202ENST00000452460 644 ntTSL 3 BASIC5.89□□□□□ -1.47
SCN4AP35499 HMGN1P9-201ENST00000515212 298 ntBASIC5.89□□□□□ -1.47
SCN4AP35499 AC022360.1-201ENST00000521058 340 ntBASIC5.89□□□□□ -1.47
SCN4AP35499 AC099506.1-201ENST00000567359 4037 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
SCN4AP35499 DSC2-202ENST00000280904 12325 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
SCN4AP35499 AC105411.1-201ENST00000568776 1470 ntTSL 4 BASIC5.89□□□□□ -1.47
SCN4AP35499 IFIT2-203ENST00000638108 3703 ntAPPRIS P2 TSL 5 BASIC5.89□□□□□ -1.47
SCN4AP35499 SPINK5-202ENST00000359874 3656 ntAPPRIS ALT2 TSL 1 (best) BASIC5.89□□□□□ -1.47
SCN4AP35499 MANEA-201ENST00000358812 4575 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
SCN4AP35499 AC125257.1-201ENST00000560400 2930 ntBASIC5.88□□□□□ -1.47
SCN4AP35499 S100A9-201ENST00000368738 577 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
SCN4AP35499 RNA5SP171-201ENST00000391071 115 ntBASIC5.88□□□□□ -1.47
SCN4AP35499 KCNMA1-AS3-201ENST00000418515 701 ntTSL 3 BASIC5.88□□□□□ -1.47
SCN4AP35499 AL451062.2-201ENST00000427515 271 ntBASIC5.88□□□□□ -1.47
SCN4AP35499 AC002465.1-201ENST00000436097 349 ntTSL 2 BASIC5.88□□□□□ -1.47
SCN4AP35499 VAV3-AS1-201ENST00000438318 619 ntTSL 2 BASIC5.88□□□□□ -1.47
SCN4AP35499 AC023271.1-201ENST00000445936 1090 ntBASIC5.88□□□□□ -1.47
SCN4AP35499 AC136424.2-201ENST00000522582 563 ntTSL 4 BASIC5.88□□□□□ -1.47
SCN4AP35499 C14orf2-211ENST00000557040 472 ntAPPRIS P1 TSL 3 BASIC5.88□□□□□ -1.47
SCN4AP35499 AC106785.1-201ENST00000565935 262 ntBASIC5.88□□□□□ -1.47
SCN4AP35499 TTN-AS1-237ENST00000590743 812 ntTSL 5 BASIC5.88□□□□□ -1.47
SCN4AP35499 LINC00904-201ENST00000604453 471 ntTSL 2 BASIC5.88□□□□□ -1.47
SCN4AP35499 AP000843.1-201ENST00000624880 701 ntBASIC5.88□□□□□ -1.47
SCN4AP35499 INSIG2-208ENST00000614681 1347 ntTSL 5 BASIC5.88□□□□□ -1.47
SCN4AP35499 CACNB4-273ENST00000638091 4061 ntTSL 5 BASIC5.88□□□□□ -1.47
SCN4AP35499 LSAMP-207ENST00000539563 8821 ntTSL 3 BASIC5.88□□□□□ -1.47
SCN4AP35499 GJA9-201ENST00000357771 1799 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
SCN4AP35499 PHLDB2-211ENST00000481953 5474 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
SCN4AP35499 OR12D3-201ENST00000396806 1869 ntAPPRIS P1 BASIC5.88□□□□□ -1.47
SCN4AP35499 ACSL5-204ENST00000393081 3380 ntAPPRIS P1 TSL 5 BASIC5.88□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 167.7 ms