Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 AC092709.1-201ENST00000521355 1045 ntBASIC4.79□□□□□ -1.64
COL5A1P20908 RNA5SP439-201ENST00000617595 124 ntBASIC4.79□□□□□ -1.64
COL5A1P20908 AL137100.1-201ENST00000556703 1620 ntBASIC4.79□□□□□ -1.64
COL5A1P20908 NKIRAS1-209ENST00000614374 1612 ntAPPRIS P2 TSL 1 (best) BASIC4.79□□□□□ -1.64
COL5A1P20908 ALPK2-201ENST00000361673 7303 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
COL5A1P20908 ANGPT2-201ENST00000325203 5416 ntAPPRIS P3 TSL 1 (best) BASIC4.78□□□□□ -1.64
COL5A1P20908 SMARCA2-206ENST00000382185 1584 ntTSL 2 BASIC4.78□□□□□ -1.64
COL5A1P20908 C6-202ENST00000337836 3551 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
COL5A1P20908 CLEC12A-205ENST00000434319 1515 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
COL5A1P20908 PTPN3-202ENST00000374541 6703 ntAPPRIS P1 TSL 5 BASIC4.78□□□□□ -1.64
COL5A1P20908 PRKAA1-204ENST00000397128 5088 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
COL5A1P20908 DSPP-202ENST00000399271 4331 ntAPPRIS P1 TSL 5 BASIC4.78□□□□□ -1.64
COL5A1P20908 ZNF546-201ENST00000347077 7987 ntAPPRIS P3 TSL 1 (best) BASIC4.78□□□□□ -1.64
COL5A1P20908 AC087257.1-201ENST00000506925 2639 ntTSL 4 BASIC4.78□□□□□ -1.64
COL5A1P20908 AC140134.1-201ENST00000511830 3544 ntBASIC4.78□□□□□ -1.64
COL5A1P20908 CEP120-203ENST00000328236 4710 ntAPPRIS P1 TSL 5 BASIC4.78□□□□□ -1.64
COL5A1P20908 FRK-201ENST00000606080 13230 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
COL5A1P20908 LINC02388-201ENST00000550678 1975 ntTSL 2 BASIC4.78□□□□□ -1.64
COL5A1P20908 LINC01951-201ENST00000377300 1925 ntTSL 2 BASIC4.78□□□□□ -1.64
COL5A1P20908 ARHGAP24-201ENST00000264343 4572 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
COL5A1P20908 LINC01422-201ENST00000434868 6043 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
COL5A1P20908 NR3C2-202ENST00000344721 5712 ntAPPRIS P1 TSL 5 BASIC4.78□□□□□ -1.64
COL5A1P20908 AL731532.1-201ENST00000623972 4236 ntBASIC4.78□□□□□ -1.64
COL5A1P20908 CCNYL2-202ENST00000637719 3311 ntTSL 2 BASIC4.78□□□□□ -1.64
COL5A1P20908 OR2M3-202ENST00000641626 9913 ntAPPRIS P1 BASIC4.78□□□□□ -1.64
COL5A1P20908 AL050305.1-201ENST00000399993 1230 ntBASIC4.78□□□□□ -1.64
COL5A1P20908 AC003975.1-201ENST00000411856 837 ntTSL 3 BASIC4.78□□□□□ -1.64
COL5A1P20908 LINC01198-201ENST00000416521 500 ntTSL 3 BASIC4.78□□□□□ -1.64
COL5A1P20908 RPL7P57-201ENST00000423238 740 ntBASIC4.78□□□□□ -1.64
COL5A1P20908 AC104971.1-201ENST00000495117 578 ntBASIC4.78□□□□□ -1.64
COL5A1P20908 AC139713.2-213ENST00000505000 796 ntTSL 2 BASIC4.78□□□□□ -1.64
COL5A1P20908 AC002428.2-201ENST00000522973 414 ntTSL 3 BASIC4.78□□□□□ -1.64
COL5A1P20908 OR5M2P-201ENST00000529003 936 ntBASIC4.78□□□□□ -1.64
COL5A1P20908 AL133485.1-201ENST00000555966 392 ntTSL 2 BASIC4.78□□□□□ -1.64
COL5A1P20908 AC126323.3-201ENST00000565136 564 ntTSL 4 BASIC4.78□□□□□ -1.64
COL5A1P20908 AC067959.1-201ENST00000604334 379 ntBASIC4.78□□□□□ -1.64
COL5A1P20908 AL121873.1-201ENST00000616013 524 ntBASIC4.78□□□□□ -1.64
COL5A1P20908 BDNF-210ENST00000438929 4059 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
COL5A1P20908 AC007681.1-201ENST00000604271 3438 ntTSL 4 BASIC4.78□□□□□ -1.64
COL5A1P20908 ATF2-201ENST00000264110 4176 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
COL5A1P20908 CSMD1-215ENST00000537824 13512 ntAPPRIS ALT2 TSL 5 BASIC4.78□□□□□ -1.64
COL5A1P20908 TTC6-202ENST00000382320 1972 ntTSL 2 BASIC4.78□□□□□ -1.64
COL5A1P20908 GTDC1-207ENST00000409298 2209 ntTSL 5 BASIC4.78□□□□□ -1.64
COL5A1P20908 FOXP1-IT1-201ENST00000498714 3539 ntTSL 2 BASIC4.78□□□□□ -1.64
COL5A1P20908 UTP15-208ENST00000543251 4922 ntTSL 2 BASIC4.77□□□□□ -1.65
COL5A1P20908 MTAP-210ENST00000580900 7557 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
COL5A1P20908 CYBB-201ENST00000378588 4324 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
COL5A1P20908 RCOR3-201ENST00000367005 4246 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
COL5A1P20908 ARIH1-201ENST00000379887 21681 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
COL5A1P20908 PHLDB2-211ENST00000481953 5474 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
COL5A1P20908 TRBV21OR9-2-201ENST00000331828 367 ntAPPRIS P1 BASIC4.77□□□□□ -1.65
COL5A1P20908 RNA5SP223-201ENST00000365174 120 ntBASIC4.77□□□□□ -1.65
COL5A1P20908 ATP5HP3-201ENST00000396994 486 ntBASIC4.77□□□□□ -1.65
COL5A1P20908 MAST4-207ENST00000407621 559 ntTSL 2 BASIC4.77□□□□□ -1.65
COL5A1P20908 SNORA11F-201ENST00000408237 128 ntBASIC4.77□□□□□ -1.65
COL5A1P20908 AL591848.1-201ENST00000413092 322 ntBASIC4.77□□□□□ -1.65
COL5A1P20908 CPB2-AS1-201ENST00000415033 747 ntTSL 3 BASIC4.77□□□□□ -1.65
COL5A1P20908 AF186996.5-201ENST00000418098 904 ntBASIC4.77□□□□□ -1.65
COL5A1P20908 TRGV7-201ENST00000427089 353 ntBASIC4.77□□□□□ -1.65
COL5A1P20908 AC016831.4-201ENST00000438302 307 ntBASIC4.77□□□□□ -1.65
COL5A1P20908 AL591178.1-201ENST00000439239 454 ntTSL 5 BASIC4.77□□□□□ -1.65
COL5A1P20908 RPS5P7-201ENST00000456664 608 ntBASIC4.77□□□□□ -1.65
COL5A1P20908 LINC01339-201ENST00000505712 440 ntTSL 2 BASIC4.77□□□□□ -1.65
COL5A1P20908 AC111000.3-201ENST00000508057 576 ntBASIC4.77□□□□□ -1.65
COL5A1P20908 AC009884.1-201ENST00000522670 545 ntTSL 4 BASIC4.77□□□□□ -1.65
COL5A1P20908 AL161757.4-204ENST00000557136 834 ntTSL 3 BASIC4.77□□□□□ -1.65
COL5A1P20908 AC109462.2-201ENST00000558730 763 ntTSL 3 BASIC4.77□□□□□ -1.65
COL5A1P20908 AC009562.1-202ENST00000558755 565 ntTSL 4 BASIC4.77□□□□□ -1.65
COL5A1P20908 AC022884.2-201ENST00000578535 580 ntBASIC4.77□□□□□ -1.65
COL5A1P20908 C7orf77-201ENST00000616258 548 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
COL5A1P20908 AC243585.1-201ENST00000617867 607 ntTSL 3 BASIC4.77□□□□□ -1.65
COL5A1P20908 AC021106.3-201ENST00000623925 531 ntBASIC4.77□□□□□ -1.65
COL5A1P20908 MIR6830-201ENST00000636015 70 ntBASIC4.77□□□□□ -1.65
COL5A1P20908 OR8J2-201ENST00000641465 2883 ntAPPRIS P1 BASIC4.77□□□□□ -1.65
COL5A1P20908 AC011287.1-206ENST00000638774 2642 ntTSL 5 BASIC4.77□□□□□ -1.65
COL5A1P20908 AL157938.3-201ENST00000502188 3084 ntTSL 4 BASIC4.77□□□□□ -1.65
COL5A1P20908 AC092329.3-201ENST00000611392 1904 ntAPPRIS P1 TSL 5 BASIC4.77□□□□□ -1.65
COL5A1P20908 CDC5L-201ENST00000371477 6423 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
COL5A1P20908 LINC00550-201ENST00000629293 3434 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
COL5A1P20908 MFSD8-220ENST00000641243 1422 ntBASIC4.77□□□□□ -1.65
COL5A1P20908 EXO1-201ENST00000348581 3192 ntAPPRIS P3 TSL 1 (best) BASIC4.77□□□□□ -1.65
COL5A1P20908 MYO3A-203ENST00000376302 2723 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
COL5A1P20908 ANK3-216ENST00000503366 5792 ntAPPRIS ALT2 TSL 2 BASIC4.77□□□□□ -1.65
COL5A1P20908 TCF7L2-217ENST00000536810 3953 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
COL5A1P20908 AC139713.2-214ENST00000642059 1811 ntBASIC4.77□□□□□ -1.65
COL5A1P20908 TUSC7-203ENST00000477539 2415 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
COL5A1P20908 PNPLA4-203ENST00000444736 2752 ntAPPRIS P1 TSL 4 BASIC4.77□□□□□ -1.65
COL5A1P20908 ASB14-202ENST00000487349 3179 ntAPPRIS P2 TSL 1 (best) BASIC4.77□□□□□ -1.65
COL5A1P20908 ZNF559-201ENST00000317221 2732 ntTSL 2 BASIC4.77□□□□□ -1.65
COL5A1P20908 SLC10A7-203ENST00000432059 3747 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
COL5A1P20908 NSF-206ENST00000575068 2667 ntTSL 2 BASIC4.77□□□□□ -1.65
COL5A1P20908 PLS3-201ENST00000289290 2277 ntTSL 2 BASIC4.77□□□□□ -1.65
COL5A1P20908 AP001267.1-201ENST00000531742 2074 ntTSL 2 BASIC4.76□□□□□ -1.65
COL5A1P20908 CTAGE5-219ENST00000640607 4239 ntAPPRIS P5 TSL 1 (best) BASIC4.76□□□□□ -1.65
COL5A1P20908 LAMTOR3-201ENST00000226522 1220 ntTSL 3 BASIC4.76□□□□□ -1.65
COL5A1P20908 OR8A1-201ENST00000284287 1146 ntAPPRIS P1 BASIC4.76□□□□□ -1.65
COL5A1P20908 SNORD113.2-201ENST00000364166 89 ntBASIC4.76□□□□□ -1.65
COL5A1P20908 MIR298-201ENST00000401212 88 ntBASIC4.76□□□□□ -1.65
COL5A1P20908 RN7SKP263-201ENST00000411194 309 ntBASIC4.76□□□□□ -1.65
COL5A1P20908 AC118345.1-201ENST00000411785 366 ntTSL 3 BASIC4.76□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 80.6 ms