Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 AC079630.1-201ENST00000412812 585 ntTSL 4 BASIC5.15□□□□□ -1.59
CCDC3Q9BQI4 LINC01359-201ENST00000415842 1157 ntTSL 2 BASIC5.15□□□□□ -1.59
CCDC3Q9BQI4 ARAFP1-201ENST00000422172 605 ntBASIC5.15□□□□□ -1.59
CCDC3Q9BQI4 NPM1P26-201ENST00000426339 738 ntBASIC5.15□□□□□ -1.59
CCDC3Q9BQI4 MTCO1P51-201ENST00000427672 1060 ntBASIC5.15□□□□□ -1.59
CCDC3Q9BQI4 AL583785.1-201ENST00000428006 512 ntTSL 2 BASIC5.15□□□□□ -1.59
CCDC3Q9BQI4 KCNIP1-205ENST00000434108 726 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
CCDC3Q9BQI4 AF127577.2-201ENST00000436429 824 ntTSL 3 BASIC5.15□□□□□ -1.59
CCDC3Q9BQI4 DAZAP2-204ENST00000439799 701 ntTSL 2 BASIC5.15□□□□□ -1.59
CCDC3Q9BQI4 AC008080.4-202ENST00000440034 1005 ntTSL 3 BASIC5.15□□□□□ -1.59
CCDC3Q9BQI4 Z80107.2-201ENST00000445127 392 ntBASIC5.15□□□□□ -1.59
CCDC3Q9BQI4 RPS15AP29-201ENST00000445539 400 ntBASIC5.15□□□□□ -1.59
CCDC3Q9BQI4 AC005772.1-201ENST00000446671 976 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
CCDC3Q9BQI4 AC068489.1-201ENST00000453706 261 ntTSL 5 BASIC5.15□□□□□ -1.59
CCDC3Q9BQI4 AL158825.2-201ENST00000455336 670 ntTSL 5 BASIC5.15□□□□□ -1.59
CCDC3Q9BQI4 GTF2F2P1-201ENST00000511083 675 ntBASIC5.15□□□□□ -1.59
CCDC3Q9BQI4 LINC02223-202ENST00000511596 578 ntTSL 5 BASIC5.15□□□□□ -1.59
CCDC3Q9BQI4 AC004980.4-201ENST00000513375 203 ntBASIC5.15□□□□□ -1.59
CCDC3Q9BQI4 RNU6-491P-201ENST00000516099 110 ntBASIC5.15□□□□□ -1.59
CCDC3Q9BQI4 AZIN1-AS1-203ENST00000517996 756 ntTSL 3 BASIC5.15□□□□□ -1.59
CCDC3Q9BQI4 LINC02451-202ENST00000548764 579 ntTSL 4 BASIC5.15□□□□□ -1.59
CCDC3Q9BQI4 USP3-AS1-202ENST00000559357 455 ntTSL 2 BASIC5.15□□□□□ -1.59
CCDC3Q9BQI4 AC018695.3-201ENST00000602617 408 ntTSL 2 BASIC5.15□□□□□ -1.59
CCDC3Q9BQI4 TEX41-254ENST00000626394 423 ntTSL 5 BASIC5.15□□□□□ -1.59
CCDC3Q9BQI4 AC093495.1-217ENST00000627385 428 ntTSL 5 BASIC5.15□□□□□ -1.59
CCDC3Q9BQI4 HPVC1-201ENST00000629899 1198 ntBASIC5.15□□□□□ -1.59
CCDC3Q9BQI4 GPATCH11-201ENST00000281932 3570 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
CCDC3Q9BQI4 ITCH-201ENST00000262650 3089 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
CCDC3Q9BQI4 PSD3-201ENST00000286485 6665 ntAPPRIS P3 TSL 1 (best) BASIC5.15□□□□□ -1.59
CCDC3Q9BQI4 C4orf36-203ENST00000473559 2306 ntAPPRIS P1 TSL 2 BASIC5.15□□□□□ -1.59
CCDC3Q9BQI4 LINC01277-201ENST00000419957 2398 ntTSL 2 BASIC5.15□□□□□ -1.59
CCDC3Q9BQI4 AP005435.3-201ENST00000531260 3198 ntBASIC5.15□□□□□ -1.59
CCDC3Q9BQI4 PRTG-201ENST00000389286 11967 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.59
CCDC3Q9BQI4 AC004158.1-201ENST00000564508 4319 ntBASIC5.15□□□□□ -1.59
CCDC3Q9BQI4 MTND4P21-201ENST00000453886 1357 ntBASIC5.15□□□□□ -1.59
CCDC3Q9BQI4 AC008079.2-201ENST00000623543 20396 ntBASIC5.15□□□□□ -1.59
CCDC3Q9BQI4 CSNK1G3-210ENST00000521364 2580 ntAPPRIS ALT2 TSL 2 BASIC5.14□□□□□ -1.59
CCDC3Q9BQI4 INTU-201ENST00000335251 13233 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
CCDC3Q9BQI4 ZNF845-201ENST00000458035 4311 ntAPPRIS P1 TSL 4 BASIC5.14□□□□□ -1.59
CCDC3Q9BQI4 AL158066.1-201ENST00000451298 3796 ntTSL 2 BASIC5.14□□□□□ -1.59
CCDC3Q9BQI4 MTUS1-201ENST00000262102 6160 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
CCDC3Q9BQI4 AC115220.1-201ENST00000330020 1453 ntAPPRIS P1 TSL 3 BASIC5.14□□□□□ -1.59
CCDC3Q9BQI4 RNF217-201ENST00000359704 1784 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
CCDC3Q9BQI4 NLRP3P1-201ENST00000622303 1785 ntBASIC5.14□□□□□ -1.59
CCDC3Q9BQI4 IREB2-201ENST00000258886 6354 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
CCDC3Q9BQI4 HDAC9-204ENST00000406451 9705 ntAPPRIS ALT1 TSL 1 (best) BASIC5.14□□□□□ -1.59
CCDC3Q9BQI4 ERC2-201ENST00000288221 6138 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
CCDC3Q9BQI4 OBSCN-205ENST00000422127 24060 ntTSL 5 BASIC5.14□□□□□ -1.59
CCDC3Q9BQI4 OR2AT4-205ENST00000641931 8357 ntAPPRIS P1 BASIC5.14□□□□□ -1.59
CCDC3Q9BQI4 OR5AU1-203ENST00000641697 7755 ntAPPRIS P1 BASIC5.14□□□□□ -1.59
CCDC3Q9BQI4 AC006484.1-201ENST00000435086 1884 ntBASIC5.14□□□□□ -1.59
CCDC3Q9BQI4 PRKACB-203ENST00000370684 869 ntTSL 5 BASIC5.14□□□□□ -1.59
CCDC3Q9BQI4 SNORA70.6-201ENST00000383934 134 ntBASIC5.14□□□□□ -1.59
CCDC3Q9BQI4 MIR600-201ENST00000385007 98 ntBASIC5.14□□□□□ -1.59
CCDC3Q9BQI4 TRAJ38-201ENST00000390499 62 ntAPPRIS P1 BASIC5.14□□□□□ -1.59
CCDC3Q9BQI4 CDKN3-203ENST00000395577 637 ntTSL 5 BASIC5.14□□□□□ -1.59
CCDC3Q9BQI4 PPIAP9-201ENST00000403866 498 ntBASIC5.14□□□□□ -1.59
CCDC3Q9BQI4 AL133482.1-201ENST00000415988 498 ntBASIC5.14□□□□□ -1.59
CCDC3Q9BQI4 AL158827.1-201ENST00000416300 391 ntBASIC5.14□□□□□ -1.59
CCDC3Q9BQI4 AC002064.2-201ENST00000420245 289 ntTSL 3 BASIC5.14□□□□□ -1.59
CCDC3Q9BQI4 AC244394.2-201ENST00000425109 735 ntTSL 5 BASIC5.14□□□□□ -1.59
CCDC3Q9BQI4 AL355870.1-201ENST00000448272 454 ntTSL 3 BASIC5.14□□□□□ -1.59
CCDC3Q9BQI4 MTND5P8-201ENST00000449817 1083 ntBASIC5.14□□□□□ -1.59
CCDC3Q9BQI4 AL589703.1-201ENST00000456032 256 ntTSL 5 BASIC5.14□□□□□ -1.59
CCDC3Q9BQI4 STRADBP1-201ENST00000478954 1281 ntBASIC5.14□□□□□ -1.59
CCDC3Q9BQI4 RN7SL423P-201ENST00000486202 304 ntBASIC5.14□□□□□ -1.59
CCDC3Q9BQI4 AC024579.1-201ENST00000503685 371 ntTSL 5 BASIC5.14□□□□□ -1.59
CCDC3Q9BQI4 LINC01340-201ENST00000504012 724 ntTSL 3 BASIC5.14□□□□□ -1.59
CCDC3Q9BQI4 AC021106.1-201ENST00000509020 1058 ntBASIC5.14□□□□□ -1.59
CCDC3Q9BQI4 AC012055.1-201ENST00000511346 1144 ntTSL 3 BASIC5.14□□□□□ -1.59
CCDC3Q9BQI4 LINC02234-202ENST00000513288 705 ntTSL 5 BASIC5.14□□□□□ -1.59
CCDC3Q9BQI4 NRG1-IT1-201ENST00000520444 758 ntTSL 3 BASIC5.14□□□□□ -1.59
CCDC3Q9BQI4 AC005906.2-204ENST00000541095 481 ntTSL 3 BASIC5.14□□□□□ -1.59
CCDC3Q9BQI4 AL121839.1-201ENST00000556233 1185 ntBASIC5.14□□□□□ -1.59
CCDC3Q9BQI4 ETFRF1-211ENST00000557540 1259 ntAPPRIS ALT1 TSL 2 BASIC5.14□□□□□ -1.59
CCDC3Q9BQI4 AC055855.2-201ENST00000565993 500 ntTSL 2 BASIC5.14□□□□□ -1.59
CCDC3Q9BQI4 AC087501.4-201ENST00000574460 235 ntTSL 5 BASIC5.14□□□□□ -1.59
CCDC3Q9BQI4 RN7SL356P-201ENST00000582228 248 ntBASIC5.14□□□□□ -1.59
CCDC3Q9BQI4 AC131274.1-201ENST00000582507 254 ntTSL 3 BASIC5.14□□□□□ -1.59
CCDC3Q9BQI4 ZNF230-204ENST00000585632 579 ntTSL 2 BASIC5.14□□□□□ -1.59
CCDC3Q9BQI4 AC243960.1-203ENST00000595395 599 ntTSL 4 BASIC5.14□□□□□ -1.59
CCDC3Q9BQI4 AC009597.2-201ENST00000604659 592 ntBASIC5.14□□□□□ -1.59
CCDC3Q9BQI4 Z95327.3-201ENST00000610385 572 ntBASIC5.14□□□□□ -1.59
CCDC3Q9BQI4 MIR6820-201ENST00000611508 62 ntBASIC5.14□□□□□ -1.59
CCDC3Q9BQI4 AL162233.1-201ENST00000620014 944 ntBASIC5.14□□□□□ -1.59
CCDC3Q9BQI4 SYNJ2BP-COX16-205ENST00000621525 929 ntAPPRIS P2 TSL 2 BASIC5.14□□□□□ -1.59
CCDC3Q9BQI4 AC022893.1-201ENST00000517664 3549 ntTSL 2 BASIC5.14□□□□□ -1.59
CCDC3Q9BQI4 ATP1B4-202ENST00000361319 3856 ntAPPRIS P3 TSL 1 (best) BASIC5.14□□□□□ -1.59
CCDC3Q9BQI4 ATP7A-202ENST00000343533 8289 ntTSL 5 BASIC5.14□□□□□ -1.59
CCDC3Q9BQI4 NBPF10-201ENST00000583866 13042 ntAPPRIS P1 TSL 5 BASIC5.14□□□□□ -1.59
CCDC3Q9BQI4 TJP1-209ENST00000545208 5007 ntAPPRIS ALT2 TSL 5 BASIC5.14□□□□□ -1.59
CCDC3Q9BQI4 ADAM18-201ENST00000265707 2388 ntAPPRIS P3 TSL 1 (best) BASIC5.14□□□□□ -1.59
CCDC3Q9BQI4 DNAJC28-202ENST00000381947 1354 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
CCDC3Q9BQI4 OR2J1-202ENST00000641659 2144 ntAPPRIS P1 BASIC5.14□□□□□ -1.59
CCDC3Q9BQI4 CTSV-203ENST00000538255 4322 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
CCDC3Q9BQI4 OR2J3-202ENST00000641151 3297 ntAPPRIS P1 BASIC5.14□□□□□ -1.59
CCDC3Q9BQI4 AC011912.1-201ENST00000623483 5819 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
CCDC3Q9BQI4 HMMR-202ENST00000358715 2988 ntAPPRIS P4 TSL 1 (best) BASIC5.13□□□□□ -1.59
CCDC3Q9BQI4 STAG2-205ENST00000371160 6045 ntAPPRIS P3 TSL 1 (best) BASIC5.13□□□□□ -1.59
CCDC3Q9BQI4 LIMA1-203ENST00000547825 3920 ntAPPRIS ALT2 TSL 1 (best) BASIC5.13□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 87.4 ms