Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AC078814.2-201ENST00000552996 535 ntTSL 4 BASIC5.41□□□□□ -1.54
COL28A1Q2UY09 RNASE9-205ENST00000553706 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC5.41□□□□□ -1.54
COL28A1Q2UY09 AC073964.1-201ENST00000558938 308 ntTSL 3 BASIC5.41□□□□□ -1.54
COL28A1Q2UY09 AC106785.3-201ENST00000564064 847 ntBASIC5.41□□□□□ -1.54
COL28A1Q2UY09 ARL2BPP3-202ENST00000580773 420 ntTSL 5 BASIC5.41□□□□□ -1.54
COL28A1Q2UY09 MIR4260-201ENST00000583107 67 ntBASIC5.41□□□□□ -1.54
COL28A1Q2UY09 AC015911.5-201ENST00000587076 451 ntBASIC5.41□□□□□ -1.54
COL28A1Q2UY09 LINC01835-202ENST00000589345 450 ntTSL 3 BASIC5.41□□□□□ -1.54
COL28A1Q2UY09 SRD5A3-AS1-204ENST00000592823 542 ntTSL 5 BASIC5.41□□□□□ -1.54
COL28A1Q2UY09 AC006116.3-201ENST00000592968 361 ntBASIC5.41□□□□□ -1.54
COL28A1Q2UY09 AL139099.4-201ENST00000614802 114 ntBASIC5.41□□□□□ -1.54
COL28A1Q2UY09 MIR1264-201ENST00000616374 69 ntBASIC5.41□□□□□ -1.54
COL28A1Q2UY09 MVP-219ENST00000629059 120 ntTSL 5 BASIC5.41□□□□□ -1.54
COL28A1Q2UY09 AJ009632.2-209ENST00000634853 933 ntTSL 5 BASIC5.41□□□□□ -1.54
COL28A1Q2UY09 NCOA7-202ENST00000368357 5521 ntAPPRIS P3 TSL 1 (best) BASIC5.41□□□□□ -1.54
COL28A1Q2UY09 SESN1-201ENST00000302071 2718 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
COL28A1Q2UY09 GBA3-205ENST00000511446 2018 ntTSL 2 BASIC5.41□□□□□ -1.54
COL28A1Q2UY09 STEAP2-205ENST00000394629 2261 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
COL28A1Q2UY09 CLCN3-201ENST00000347613 3635 ntAPPRIS P4 TSL 1 (best) BASIC5.41□□□□□ -1.54
COL28A1Q2UY09 TMEM161B-210ENST00000511218 1351 ntTSL 2 BASIC5.41□□□□□ -1.54
COL28A1Q2UY09 CRNDE-212ENST00000613942 2601 ntTSL 5 BASIC5.41□□□□□ -1.54
COL28A1Q2UY09 MBNL1-203ENST00000324196 5225 ntTSL 5 BASIC5.41□□□□□ -1.54
COL28A1Q2UY09 CEACAM1-201ENST00000161559 3519 ntAPPRIS P3 TSL 1 (best) BASIC5.4□□□□□ -1.54
COL28A1Q2UY09 ESRRG-205ENST00000366937 5365 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
COL28A1Q2UY09 ZNF493-202ENST00000355504 4386 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
COL28A1Q2UY09 VNN3-211ENST00000509351 1700 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
COL28A1Q2UY09 IGF1-202ENST00000337514 7359 ntAPPRIS P3 TSL 1 (best) BASIC5.4□□□□□ -1.54
COL28A1Q2UY09 OSBPL9P1-201ENST00000604744 1469 ntBASIC5.4□□□□□ -1.54
COL28A1Q2UY09 KIF27-204ENST00000413982 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC5.4□□□□□ -1.54
COL28A1Q2UY09 FNIP1-202ENST00000307968 6388 ntAPPRIS ALT2 TSL 5 BASIC5.4□□□□□ -1.54
COL28A1Q2UY09 WDR72-203ENST00000557913 5900 ntAPPRIS ALT1 TSL 5 BASIC5.4□□□□□ -1.54
COL28A1Q2UY09 GABRG1-201ENST00000295452 6785 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
COL28A1Q2UY09 AC130304.1-201ENST00000622942 2385 ntBASIC5.4□□□□□ -1.54
COL28A1Q2UY09 LINC01020-202ENST00000508201 1800 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
COL28A1Q2UY09 FCER1G-201ENST00000289902 591 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
COL28A1Q2UY09 RNU6-792P-201ENST00000363490 107 ntBASIC5.4□□□□□ -1.54
COL28A1Q2UY09 AL034376.1-201ENST00000380106 484 ntTSL 2 BASIC5.4□□□□□ -1.54
COL28A1Q2UY09 GEN1-202ENST00000381254 6367 ntAPPRIS P1 TSL 5 BASIC5.4□□□□□ -1.54
COL28A1Q2UY09 AC099654.1-202ENST00000415836 564 ntTSL 4 BASIC5.4□□□□□ -1.54
COL28A1Q2UY09 REREP1Y-201ENST00000422655 198 ntBASIC5.4□□□□□ -1.54
COL28A1Q2UY09 UBE2D3P3-201ENST00000426992 425 ntBASIC5.4□□□□□ -1.54
COL28A1Q2UY09 AL021153.1-201ENST00000427360 308 ntTSL 3 BASIC5.4□□□□□ -1.54
COL28A1Q2UY09 AF230666.1-201ENST00000429151 786 ntTSL 2 BASIC5.4□□□□□ -1.54
COL28A1Q2UY09 HSFY7P-201ENST00000432672 318 ntBASIC5.4□□□□□ -1.54
COL28A1Q2UY09 HSFY8P-201ENST00000437934 318 ntBASIC5.4□□□□□ -1.54
COL28A1Q2UY09 REREP2Y-201ENST00000439103 200 ntBASIC5.4□□□□□ -1.54
COL28A1Q2UY09 AC026320.1-202ENST00000444729 672 ntTSL 3 BASIC5.4□□□□□ -1.54
COL28A1Q2UY09 AL161722.1-201ENST00000446972 1032 ntBASIC5.4□□□□□ -1.54
COL28A1Q2UY09 HSFY5P-201ENST00000453726 309 ntBASIC5.4□□□□□ -1.54
COL28A1Q2UY09 RPL5P22-201ENST00000480199 884 ntBASIC5.4□□□□□ -1.54
COL28A1Q2UY09 RN7SL459P-201ENST00000481078 302 ntBASIC5.4□□□□□ -1.54
COL28A1Q2UY09 LINC01995-201ENST00000489016 621 ntTSL 3 BASIC5.4□□□□□ -1.54
COL28A1Q2UY09 AC092916.1-201ENST00000497896 411 ntTSL 3 BASIC5.4□□□□□ -1.54
COL28A1Q2UY09 HPRT1P1-201ENST00000509498 657 ntBASIC5.4□□□□□ -1.54
COL28A1Q2UY09 AC097515.1-202ENST00000511818 371 ntTSL 3 BASIC5.4□□□□□ -1.54
COL28A1Q2UY09 THUMPD3-AS1-210ENST00000519043 1115 ntTSL 3 BASIC5.4□□□□□ -1.54
COL28A1Q2UY09 AP000753.2-201ENST00000540307 423 ntTSL 3 BASIC5.4□□□□□ -1.54
COL28A1Q2UY09 DCN-210ENST00000547568 823 ntTSL 3 BASIC5.4□□□□□ -1.54
COL28A1Q2UY09 AC093014.1-201ENST00000548926 724 ntBASIC5.4□□□□□ -1.54
COL28A1Q2UY09 AC025423.4-201ENST00000553141 785 ntTSL 3 BASIC5.4□□□□□ -1.54
COL28A1Q2UY09 SYNE2-210ENST00000553455 674 ntTSL 2 BASIC5.4□□□□□ -1.54
COL28A1Q2UY09 ETFRF1-208ENST00000556402 874 ntTSL 3 BASIC5.4□□□□□ -1.54
COL28A1Q2UY09 AC018767.1-201ENST00000566236 405 ntTSL 3 BASIC5.4□□□□□ -1.54
COL28A1Q2UY09 MIR1254-2-201ENST00000579553 63 ntBASIC5.4□□□□□ -1.54
COL28A1Q2UY09 AC010320.2-203ENST00000601745 574 ntTSL 4 BASIC5.4□□□□□ -1.54
COL28A1Q2UY09 AC024933.1-201ENST00000608472 348 ntBASIC5.4□□□□□ -1.54
COL28A1Q2UY09 AC019131.2-201ENST00000609071 870 ntBASIC5.4□□□□□ -1.54
COL28A1Q2UY09 OR5R1-201ENST00000623286 975 ntAPPRIS P1 BASIC5.4□□□□□ -1.54
COL28A1Q2UY09 AC132068.1-201ENST00000623805 459 ntBASIC5.4□□□□□ -1.54
COL28A1Q2UY09 BANCR-201ENST00000624238 473 ntTSL 2 BASIC5.4□□□□□ -1.54
COL28A1Q2UY09 C8orf89-203ENST00000625134 507 ntAPPRIS ALT2 TSL 1 (best) BASIC5.4□□□□□ -1.54
COL28A1Q2UY09 SATB1-AS1-237ENST00000626982 735 ntTSL 5 BASIC5.4□□□□□ -1.54
COL28A1Q2UY09 AC134980.1-203ENST00000640541 570 ntTSL 4 BASIC5.4□□□□□ -1.54
COL28A1Q2UY09 C6orf163-202ENST00000388923 1308 ntAPPRIS P1 TSL 5 BASIC5.4□□□□□ -1.55
COL28A1Q2UY09 AL136520.1-201ENST00000600311 1322 ntBASIC5.4□□□□□ -1.55
COL28A1Q2UY09 GLYATL1-202ENST00000317391 1627 ntAPPRIS ALT2 TSL 1 (best) BASIC5.4□□□□□ -1.55
COL28A1Q2UY09 TPK1-207ENST00000538212 2243 ntTSL 2 BASIC5.4□□□□□ -1.55
COL28A1Q2UY09 MAPK10-297ENST00000641287 3725 ntAPPRIS P2 BASIC5.4□□□□□ -1.55
COL28A1Q2UY09 ZNF616-204ENST00000600228 4335 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
COL28A1Q2UY09 OR5A2-203ENST00000641673 9444 ntAPPRIS P1 BASIC5.4□□□□□ -1.55
COL28A1Q2UY09 AC091045.1-201ENST00000561460 2277 ntTSL 5 BASIC5.4□□□□□ -1.55
COL28A1Q2UY09 INSL4-201ENST00000239316 1952 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
COL28A1Q2UY09 ADGRF5-201ENST00000265417 5668 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
COL28A1Q2UY09 MRE11-203ENST00000393241 2604 ntAPPRIS ALT1 TSL 5 BASIC5.4□□□□□ -1.55
COL28A1Q2UY09 AC007382.1-201ENST00000624376 2618 ntBASIC5.4□□□□□ -1.55
COL28A1Q2UY09 VPS50-220ENST00000544910 5736 ntTSL 2 BASIC5.4□□□□□ -1.55
COL28A1Q2UY09 GPATCH11-201ENST00000281932 3570 ntTSL 1 (best) BASIC5.4□□□□□ -1.55
COL28A1Q2UY09 PTK2-213ENST00000519465 3279 ntTSL 1 (best) BASIC5.4□□□□□ -1.55
COL28A1Q2UY09 ADAM18-201ENST00000265707 2388 ntAPPRIS P3 TSL 1 (best) BASIC5.4□□□□□ -1.55
COL28A1Q2UY09 AC089984.1-201ENST00000552780 1431 ntTSL 3 BASIC5.4□□□□□ -1.55
COL28A1Q2UY09 PHC3-217ENST00000497658 2087 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
COL28A1Q2UY09 NBPF20-205ENST00000622803 3689 ntTSL 5 BASIC5.39□□□□□ -1.55
COL28A1Q2UY09 PARP8-212ENST00000505697 2747 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
COL28A1Q2UY09 MAPK10-338ENST00000641647 3362 ntBASIC5.39□□□□□ -1.55
COL28A1Q2UY09 AL022311.1-201ENST00000623726 19416 ntBASIC5.39□□□□□ -1.55
COL28A1Q2UY09 KMT2D-201ENST00000301067 19419 ntAPPRIS P1 TSL 5 BASIC5.39□□□□□ -1.55
COL28A1Q2UY09 PATE1-201ENST00000305738 1527 ntAPPRIS P2 TSL 1 (best) BASIC5.39□□□□□ -1.55
COL28A1Q2UY09 KSR2-202ENST00000425217 17008 ntTSL 5 BASIC5.39□□□□□ -1.55
COL28A1Q2UY09 DUSP19-202ENST00000354221 5176 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
COL28A1Q2UY09 KDM4C-214ENST00000536108 3406 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 94.1 ms