Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 MAGEB16-203ENST00000399988 1682 ntAPPRIS P2 TSL 5 BASIC4.65□□□□□ -1.66
HOXA1P49639 KIF2A-203ENST00000407818 2315 ntTSL 1 (best) BASIC4.65□□□□□ -1.66
HOXA1P49639 ZNF29P-201ENST00000225587 168 ntBASIC4.65□□□□□ -1.67
HOXA1P49639 OR52B1P-201ENST00000316506 909 ntBASIC4.65□□□□□ -1.67
HOXA1P49639 CFHR4-203ENST00000367418 1066 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
HOXA1P49639 SPRR2E-202ENST00000368751 692 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
HOXA1P49639 TRPM3-206ENST00000377097 554 ntTSL 2 BASIC4.65□□□□□ -1.67
HOXA1P49639 TRAV1-2-201ENST00000390423 402 ntAPPRIS P1 BASIC4.65□□□□□ -1.67
HOXA1P49639 LINC00342-201ENST00000412393 654 ntTSL 3 BASIC4.65□□□□□ -1.67
HOXA1P49639 AL109610.1-201ENST00000414598 431 ntTSL 3 BASIC4.65□□□□□ -1.67
HOXA1P49639 AL139008.2-201ENST00000420315 395 ntTSL 3 BASIC4.65□□□□□ -1.67
HOXA1P49639 C5orf58-201ENST00000421269 406 ntAPPRIS ALT2 TSL 2 BASIC4.65□□□□□ -1.67
HOXA1P49639 OR10T1P-201ENST00000424327 947 ntBASIC4.65□□□□□ -1.67
HOXA1P49639 AC092865.3-201ENST00000425390 1026 ntBASIC4.65□□□□□ -1.67
HOXA1P49639 AL160175.1-201ENST00000428124 247 ntBASIC4.65□□□□□ -1.67
HOXA1P49639 HSPD1P12-201ENST00000429127 1069 ntBASIC4.65□□□□□ -1.67
HOXA1P49639 AL354896.1-201ENST00000430214 561 ntTSL 4 BASIC4.65□□□□□ -1.67
HOXA1P49639 DMD-AS3-201ENST00000439592 293 ntTSL 3 BASIC4.65□□□□□ -1.67
HOXA1P49639 AL672167.1-201ENST00000441381 464 ntTSL 3 BASIC4.65□□□□□ -1.67
HOXA1P49639 AL049552.1-201ENST00000444302 577 ntTSL 2 BASIC4.65□□□□□ -1.67
HOXA1P49639 AL512380.1-202ENST00000447728 543 ntTSL 5 BASIC4.65□□□□□ -1.67
HOXA1P49639 OR7E116P-201ENST00000448529 957 ntBASIC4.65□□□□□ -1.67
HOXA1P49639 KF459542.1-201ENST00000450908 553 ntBASIC4.65□□□□□ -1.67
HOXA1P49639 AC011752.1-201ENST00000451476 494 ntTSL 5 BASIC4.65□□□□□ -1.67
HOXA1P49639 AL355314.1-201ENST00000453639 316 ntTSL 5 BASIC4.65□□□□□ -1.67
HOXA1P49639 AC073130.1-202ENST00000454897 587 ntTSL 2 BASIC4.65□□□□□ -1.67
HOXA1P49639 AC246785.3-201ENST00000455105 314 ntTSL 5 BASIC4.65□□□□□ -1.67
HOXA1P49639 AL356270.1-201ENST00000456587 522 ntTSL 3 BASIC4.65□□□□□ -1.67
HOXA1P49639 Metazoa_SRP.158-201ENST00000487171 294 ntBASIC4.65□□□□□ -1.67
HOXA1P49639 RPS27P20-201ENST00000492051 246 ntBASIC4.65□□□□□ -1.67
HOXA1P49639 AC097534.1-201ENST00000507803 521 ntTSL 4 BASIC4.65□□□□□ -1.67
HOXA1P49639 UGT2A3P7-201ENST00000510485 734 ntBASIC4.65□□□□□ -1.67
HOXA1P49639 ZFAND1-204ENST00000517588 633 ntTSL 2 BASIC4.65□□□□□ -1.67
HOXA1P49639 AC104012.1-201ENST00000517848 719 ntTSL 3 BASIC4.65□□□□□ -1.67
HOXA1P49639 AC034205.1-201ENST00000520621 638 ntBASIC4.65□□□□□ -1.67
HOXA1P49639 TMEM68-214ENST00000523073 536 ntTSL 3 BASIC4.65□□□□□ -1.67
HOXA1P49639 CD44-AS1-201ENST00000528869 587 ntTSL 4 BASIC4.65□□□□□ -1.67
HOXA1P49639 AC118942.1-201ENST00000529674 1035 ntBASIC4.65□□□□□ -1.67
HOXA1P49639 AP000916.1-201ENST00000533869 835 ntBASIC4.65□□□□□ -1.67
HOXA1P49639 BTG1P1-201ENST00000540396 508 ntBASIC4.65□□□□□ -1.67
HOXA1P49639 AC069208.1-201ENST00000540811 676 ntTSL 4 BASIC4.65□□□□□ -1.67
HOXA1P49639 RAD51AP1-213ENST00000544927 787 ntTSL 4 BASIC4.65□□□□□ -1.67
HOXA1P49639 LINC02399-201ENST00000547094 400 ntTSL 2 BASIC4.65□□□□□ -1.67
HOXA1P49639 SMARCE1P3-201ENST00000553649 1231 ntBASIC4.65□□□□□ -1.67
HOXA1P49639 AC092134.1-201ENST00000563690 800 ntTSL 3 BASIC4.65□□□□□ -1.67
HOXA1P49639 AC021483.2-201ENST00000567415 758 ntBASIC4.65□□□□□ -1.67
HOXA1P49639 DSG1-AS1-202ENST00000578477 588 ntTSL 3 BASIC4.65□□□□□ -1.67
HOXA1P49639 AC103810.2-203ENST00000584959 631 ntTSL 5 BASIC4.65□□□□□ -1.67
HOXA1P49639 AC091132.5-204ENST00000586348 630 ntTSL 3 BASIC4.65□□□□□ -1.67
HOXA1P49639 AC006504.7-201ENST00000592806 924 ntTSL 3 BASIC4.65□□□□□ -1.67
HOXA1P49639 SMIM12P1-201ENST00000603004 274 ntBASIC4.65□□□□□ -1.67
HOXA1P49639 AC013244.3-201ENST00000605614 388 ntBASIC4.65□□□□□ -1.67
HOXA1P49639 NQO2-209ENST00000606474 470 ntTSL 3 BASIC4.65□□□□□ -1.67
HOXA1P49639 MALAT1-214ENST00000618925 424 ntTSL 5 BASIC4.65□□□□□ -1.67
HOXA1P49639 REV3L-214ENST00000619481 969 ntTSL 5 BASIC4.65□□□□□ -1.67
HOXA1P49639 OR51F1-202ENST00000624103 939 ntAPPRIS ALT1 BASIC4.65□□□□□ -1.67
HOXA1P49639 AC245187.2-201ENST00000631520 475 ntTSL 3 BASIC4.65□□□□□ -1.67
HOXA1P49639 AC073488.3-201ENST00000631611 778 ntBASIC4.65□□□□□ -1.67
HOXA1P49639 OR2L5-201ENST00000355281 2429 ntAPPRIS P1 BASIC4.65□□□□□ -1.67
HOXA1P49639 ZNF480-204ENST00000490272 2238 ntTSL 2 BASIC4.65□□□□□ -1.67
HOXA1P49639 KCNJ16-204ENST00000585558 4014 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
HOXA1P49639 AC092447.5-201ENST00000429367 2741 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
HOXA1P49639 PLS1-211ENST00000497002 2258 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
HOXA1P49639 AC016747.4-201ENST00000462959 1383 ntTSL 2 BASIC4.65□□□□□ -1.67
HOXA1P49639 AKAP6-212ENST00000557272 4601 ntTSL 5 BASIC4.65□□□□□ -1.67
HOXA1P49639 UGT2B26P-201ENST00000508672 1613 ntBASIC4.64□□□□□ -1.67
HOXA1P49639 SLC17A4-202ENST00000397076 2331 ntTSL 2 BASIC4.64□□□□□ -1.67
HOXA1P49639 RXFP1-203ENST00000343542 2130 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
HOXA1P49639 CSMD3-201ENST00000297405 13212 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
HOXA1P49639 LINC01109-201ENST00000603837 3081 ntBASIC4.64□□□□□ -1.67
HOXA1P49639 VN2R3P-201ENST00000422626 1412 ntBASIC4.64□□□□□ -1.67
HOXA1P49639 OR10G4-203ENST00000641722 3301 ntAPPRIS P1 BASIC4.64□□□□□ -1.67
HOXA1P49639 MAPK10-286ENST00000641208 8747 ntBASIC4.64□□□□□ -1.67
HOXA1P49639 ACE2-202ENST00000427411 3507 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
HOXA1P49639 TATDN1-201ENST00000276692 1018 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
HOXA1P49639 AC017079.1-201ENST00000333650 415 ntBASIC4.64□□□□□ -1.67
HOXA1P49639 FHIT-201ENST00000341848 174 ntTSL 3 BASIC4.64□□□□□ -1.67
HOXA1P49639 C1orf54-202ENST00000369099 600 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
HOXA1P49639 TINAG-203ENST00000370869 782 ntTSL 3 BASIC4.64□□□□□ -1.67
HOXA1P49639 ZRSR2-202ENST00000380308 744 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
HOXA1P49639 MIR191-201ENST00000384873 92 ntBASIC4.64□□□□□ -1.67
HOXA1P49639 AL355615.1-201ENST00000406187 641 ntBASIC4.64□□□□□ -1.67
HOXA1P49639 RN7SKP146-201ENST00000410242 334 ntBASIC4.64□□□□□ -1.67
HOXA1P49639 AC009965.1-201ENST00000411436 570 ntTSL 4 BASIC4.64□□□□□ -1.67
HOXA1P49639 AL512622.1-201ENST00000414106 481 ntTSL 3 BASIC4.64□□□□□ -1.67
HOXA1P49639 GCG-202ENST00000418842 1289 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
HOXA1P49639 AL354956.1-201ENST00000424487 467 ntTSL 5 BASIC4.64□□□□□ -1.67
HOXA1P49639 MTCO1P43-201ENST00000431831 488 ntBASIC4.64□□□□□ -1.67
HOXA1P49639 DEFA9P-201ENST00000433042 285 ntBASIC4.64□□□□□ -1.67
HOXA1P49639 RPS12P17-201ENST00000438591 377 ntBASIC4.64□□□□□ -1.67
HOXA1P49639 AL138921.1-201ENST00000444359 846 ntTSL 5 BASIC4.64□□□□□ -1.67
HOXA1P49639 AC104653.1-202ENST00000446401 390 ntTSL 3 BASIC4.64□□□□□ -1.67
HOXA1P49639 PPIAP7-201ENST00000454070 489 ntBASIC4.64□□□□□ -1.67
HOXA1P49639 AL023584.2-201ENST00000454411 444 ntTSL 5 BASIC4.64□□□□□ -1.67
HOXA1P49639 AGBL4-IT1-201ENST00000457061 514 ntTSL 3 BASIC4.64□□□□□ -1.67
HOXA1P49639 AC073636.1-202ENST00000457756 558 ntTSL 4 BASIC4.64□□□□□ -1.67
HOXA1P49639 GTPBP8-204ENST00000467752 686 ntTSL 5 BASIC4.64□□□□□ -1.67
HOXA1P49639 CNOT10-AS1-201ENST00000475395 466 ntTSL 3 BASIC4.64□□□□□ -1.67
HOXA1P49639 AC092865.4-201ENST00000477936 615 ntBASIC4.64□□□□□ -1.67
HOXA1P49639 SYT14P1-201ENST00000481459 721 ntBASIC4.64□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 67.6 ms