Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 UNC13B-210ENST00000636694 8012 ntTSL 5 BASIC6.34□□□□□ -1.39
COL18A1P39060 PRDM2-202ENST00000311066 7437 ntAPPRIS ALT2 TSL 5 BASIC6.34□□□□□ -1.4
COL18A1P39060 NUDT6-202ENST00000339154 1065 ntTSL 1 (best) BASIC6.34□□□□□ -1.4
COL18A1P39060 OR6C69P-201ENST00000394268 893 ntBASIC6.34□□□□□ -1.4
COL18A1P39060 GPS2P1-201ENST00000411761 986 ntBASIC6.34□□□□□ -1.4
COL18A1P39060 RPL7P32-201ENST00000457119 744 ntBASIC6.34□□□□□ -1.4
COL18A1P39060 RPL23AP24-201ENST00000458203 385 ntBASIC6.34□□□□□ -1.4
COL18A1P39060 AC022784.4-201ENST00000518589 422 ntTSL 1 (best) BASIC6.34□□□□□ -1.4
COL18A1P39060 UTP14C-201ENST00000521776 5529 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.4
COL18A1P39060 AC021242.2-201ENST00000522765 454 ntTSL 3 BASIC6.34□□□□□ -1.4
COL18A1P39060 AC006206.2-202ENST00000537714 648 ntTSL 5 BASIC6.34□□□□□ -1.4
COL18A1P39060 VN1R85P-201ENST00000601587 426 ntBASIC6.34□□□□□ -1.4
COL18A1P39060 LINC02335-201ENST00000616578 659 ntTSL 3 BASIC6.34□□□□□ -1.4
COL18A1P39060 AC243960.7-201ENST00000623532 707 ntBASIC6.34□□□□□ -1.4
COL18A1P39060 AL355306.2-208ENST00000634868 1251 ntTSL 5 BASIC6.34□□□□□ -1.4
COL18A1P39060 IQCB2P-201ENST00000401788 1633 ntBASIC6.33□□□□□ -1.4
COL18A1P39060 PHTF2-207ENST00000424760 1977 ntTSL 2 BASIC6.33□□□□□ -1.4
COL18A1P39060 OR14L1P-202ENST00000641545 3009 ntBASIC6.33□□□□□ -1.4
COL18A1P39060 DCTN4-201ENST00000424236 4054 ntTSL 2 BASIC6.33□□□□□ -1.4
COL18A1P39060 TNRC6A-202ENST00000395799 8438 ntAPPRIS P3 TSL 5 BASIC6.33□□□□□ -1.4
COL18A1P39060 AC092650.1-201ENST00000447571 1808 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
COL18A1P39060 SYTL2-204ENST00000389958 1943 ntTSL 2 BASIC6.33□□□□□ -1.4
COL18A1P39060 RSF1-201ENST00000308488 11550 ntAPPRIS P2 TSL 1 (best) BASIC6.33□□□□□ -1.4
COL18A1P39060 FAM19A1-201ENST00000478136 2014 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
COL18A1P39060 NR3C2-202ENST00000344721 5712 ntAPPRIS P1 TSL 5 BASIC6.33□□□□□ -1.4
COL18A1P39060 FAM227A-205ENST00000535113 10322 ntAPPRIS ALT2 TSL 5 BASIC6.33□□□□□ -1.4
COL18A1P39060 PHF7-211ENST00000615126 1328 ntTSL 5 BASIC6.33□□□□□ -1.4
COL18A1P39060 MDM4-207ENST00000454264 9926 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
COL18A1P39060 OR12D3-201ENST00000396806 1869 ntAPPRIS P1 BASIC6.33□□□□□ -1.4
COL18A1P39060 STX3-208ENST00000641815 3236 ntBASIC6.33□□□□□ -1.4
COL18A1P39060 GPR85-201ENST00000297146 5079 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
COL18A1P39060 RPL23AP59-201ENST00000399415 461 ntBASIC6.33□□□□□ -1.4
COL18A1P39060 AC118345.1-201ENST00000411785 366 ntTSL 3 BASIC6.33□□□□□ -1.4
COL18A1P39060 VN1R37P-201ENST00000419096 748 ntBASIC6.33□□□□□ -1.4
COL18A1P39060 RPS17P8-201ENST00000434525 335 ntBASIC6.33□□□□□ -1.4
COL18A1P39060 AC016559.2-201ENST00000510759 359 ntBASIC6.33□□□□□ -1.4
COL18A1P39060 RNU4ATAC18P-201ENST00000516179 126 ntBASIC6.33□□□□□ -1.4
COL18A1P39060 AP001381.1-201ENST00000584109 534 ntTSL 5 BASIC6.33□□□□□ -1.4
COL18A1P39060 VDAC1P8-204ENST00000589489 997 ntTSL 5 BASIC6.33□□□□□ -1.4
COL18A1P39060 OR7A5-202ENST00000594432 1029 ntAPPRIS P1 BASIC6.33□□□□□ -1.4
COL18A1P39060 AC026367.3-201ENST00000619032 590 ntBASIC6.33□□□□□ -1.4
COL18A1P39060 U3.53-201ENST00000628922 216 ntBASIC6.33□□□□□ -1.4
COL18A1P39060 UBR5-204ENST00000518205 1931 ntTSL 5 BASIC6.33□□□□□ -1.4
COL18A1P39060 PROM1-220ENST00000540805 3908 ntAPPRIS ALT2 TSL 5 BASIC6.33□□□□□ -1.4
COL18A1P39060 ADAM7-201ENST00000175238 3367 ntAPPRIS P2 TSL 1 (best) BASIC6.33□□□□□ -1.4
COL18A1P39060 DSPP-202ENST00000399271 4331 ntAPPRIS P1 TSL 5 BASIC6.33□□□□□ -1.4
COL18A1P39060 CDON-202ENST00000392693 9138 ntAPPRIS ALT2 TSL 1 (best) BASIC6.32□□□□□ -1.4
COL18A1P39060 AC120338.1-201ENST00000625074 1541 ntBASIC6.32□□□□□ -1.4
COL18A1P39060 MEF2C-202ENST00000424173 6336 ntAPPRIS P3 TSL 1 (best) BASIC6.32□□□□□ -1.4
COL18A1P39060 BLM-201ENST00000355112 5258 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
COL18A1P39060 KIAA1549L-202ENST00000321505 11678 ntAPPRIS P2 TSL 1 (best) BASIC6.32□□□□□ -1.4
COL18A1P39060 RPS27AP12-201ENST00000429552 465 ntBASIC6.32□□□□□ -1.4
COL18A1P39060 AC004980.3-201ENST00000447046 365 ntBASIC6.32□□□□□ -1.4
COL18A1P39060 LINC02527-201ENST00000449069 762 ntTSL 3 BASIC6.32□□□□□ -1.4
COL18A1P39060 RBPMS-207ENST00000519647 780 ntTSL 5 BASIC6.32□□□□□ -1.4
COL18A1P39060 TRAV8-5-201ENST00000537369 341 ntBASIC6.32□□□□□ -1.4
COL18A1P39060 PLSCR2-207ENST00000613069 1208 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
COL18A1P39060 ASNSP1-204ENST00000641977 1664 ntBASIC6.32□□□□□ -1.4
COL18A1P39060 LINC00276-202ENST00000418420 3503 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
COL18A1P39060 LINC01239-202ENST00000436786 2347 ntTSL 2 BASIC6.32□□□□□ -1.4
COL18A1P39060 DNAH17-202ENST00000585328 13708 ntAPPRIS ALT2 TSL 5 BASIC6.32□□□□□ -1.4
COL18A1P39060 ZNF292-201ENST00000339907 8287 ntAPPRIS ALT1 TSL 5 BASIC6.32□□□□□ -1.4
COL18A1P39060 AC025574.1-201ENST00000554784 1653 ntBASIC6.32□□□□□ -1.4
COL18A1P39060 NFKBIZ-203ENST00000394054 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC6.32□□□□□ -1.4
COL18A1P39060 MROH9-202ENST00000367759 3165 ntAPPRIS ALT2 TSL 5 BASIC6.31□□□□□ -1.4
COL18A1P39060 TAS2R3-201ENST00000247879 1101 ntAPPRIS P1 BASIC6.31□□□□□ -1.4
COL18A1P39060 LINC00474-201ENST00000374014 769 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
COL18A1P39060 LINC01341-201ENST00000419361 552 ntTSL 2 BASIC6.31□□□□□ -1.4
COL18A1P39060 AC122718.1-201ENST00000439448 744 ntBASIC6.31□□□□□ -1.4
COL18A1P39060 CDC27P1-201ENST00000445384 715 ntBASIC6.31□□□□□ -1.4
COL18A1P39060 AL356309.2-201ENST00000454034 719 ntTSL 5 BASIC6.31□□□□□ -1.4
COL18A1P39060 AL645608.2-201ENST00000458555 471 ntTSL 2 BASIC6.31□□□□□ -1.4
COL18A1P39060 RN7SL517P-201ENST00000462240 305 ntBASIC6.31□□□□□ -1.4
COL18A1P39060 FAM133DP-201ENST00000464802 691 ntBASIC6.31□□□□□ -1.4
COL18A1P39060 RPL21P129-201ENST00000491732 478 ntBASIC6.31□□□□□ -1.4
COL18A1P39060 LINC02502-201ENST00000505122 642 ntTSL 4 BASIC6.31□□□□□ -1.4
COL18A1P39060 AC110275.1-201ENST00000534420 623 ntAPPRIS P1 TSL 4 BASIC6.31□□□□□ -1.4
COL18A1P39060 AC009803.1-202ENST00000551940 544 ntTSL 4 BASIC6.31□□□□□ -1.4
COL18A1P39060 AL139354.1-201ENST00000554319 645 ntTSL 5 BASIC6.31□□□□□ -1.4
COL18A1P39060 AC009063.2-203ENST00000567860 745 ntTSL 2 BASIC6.31□□□□□ -1.4
COL18A1P39060 AL121932.1-201ENST00000605542 214 ntBASIC6.31□□□□□ -1.4
COL18A1P39060 CCDC195-201ENST00000638102 606 ntAPPRIS P1 TSL 5 BASIC6.31□□□□□ -1.4
COL18A1P39060 LINC01277-201ENST00000419957 2398 ntTSL 2 BASIC6.31□□□□□ -1.4
COL18A1P39060 SLC5A12-201ENST00000280467 2269 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
COL18A1P39060 NOL8P1-201ENST00000508336 3529 ntBASIC6.31□□□□□ -1.4
COL18A1P39060 NAT2-201ENST00000286479 1322 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
COL18A1P39060 SAMMSON-210ENST00000641260 1308 ntBASIC6.31□□□□□ -1.4
COL18A1P39060 AC007681.1-201ENST00000604271 3438 ntTSL 4 BASIC6.31□□□□□ -1.4
COL18A1P39060 THADA-207ENST00000405975 6114 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
COL18A1P39060 MID1-209ENST00000453318 6393 ntAPPRIS P1 TSL 5 BASIC6.31□□□□□ -1.4
COL18A1P39060 OR1A1-202ENST00000641322 3743 ntAPPRIS P1 BASIC6.31□□□□□ -1.4
COL18A1P39060 THSD7B-202ENST00000409968 6111 ntAPPRIS P2 TSL 5 BASIC6.31□□□□□ -1.4
COL18A1P39060 GPATCH2L-201ENST00000261530 14007 ntTSL 2 BASIC6.31□□□□□ -1.4
COL18A1P39060 AP003774.2-202ENST00000449694 341 ntTSL 3 BASIC6.31□□□□□ -1.4
COL18A1P39060 AC124067.3-201ENST00000522643 847 ntTSL 3 BASIC6.31□□□□□ -1.4
COL18A1P39060 HNRNPRP2-201ENST00000528421 743 ntBASIC6.31□□□□□ -1.4
COL18A1P39060 RAD51AP1-213ENST00000544927 787 ntTSL 4 BASIC6.31□□□□□ -1.4
COL18A1P39060 RN7SL652P-201ENST00000577769 300 ntBASIC6.31□□□□□ -1.4
COL18A1P39060 AC069061.3-201ENST00000582254 823 ntBASIC6.31□□□□□ -1.4
COL18A1P39060 ZBTB8B-201ENST00000609129 12834 ntAPPRIS P1 TSL 5 BASIC6.31□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 90.8 ms