Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AC099842.1-201ENST00000619919 596 ntBASIC5.77□□□□□ -1.49
MSX2P35548 AC015804.1-201ENST00000622935 435 ntBASIC5.77□□□□□ -1.49
MSX2P35548 RBM12B-AS1-201ENST00000623283 653 ntBASIC5.77□□□□□ -1.49
MSX2P35548 AC092159.4-201ENST00000624944 550 ntBASIC5.77□□□□□ -1.49
MSX2P35548 AC099654.13-201ENST00000639774 207 ntBASIC5.77□□□□□ -1.49
MSX2P35548 ZNF492-201ENST00000456783 4245 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
MSX2P35548 SENP8-202ENST00000542035 1672 ntAPPRIS P1 TSL 2 BASIC5.77□□□□□ -1.49
MSX2P35548 SEMA3A-201ENST00000265362 8225 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
MSX2P35548 AF127577.4-201ENST00000432230 5929 ntTSL 5 BASIC5.77□□□□□ -1.49
MSX2P35548 CDC27P2-201ENST00000425026 1922 ntBASIC5.77□□□□□ -1.49
MSX2P35548 AC114774.1-201ENST00000507410 1770 ntBASIC5.77□□□□□ -1.49
MSX2P35548 PPBPP2-201ENST00000513150 1362 ntBASIC5.77□□□□□ -1.49
MSX2P35548 CSMD1-215ENST00000537824 13512 ntAPPRIS ALT2 TSL 5 BASIC5.77□□□□□ -1.49
MSX2P35548 PNPLA4-203ENST00000444736 2752 ntAPPRIS P1 TSL 4 BASIC5.77□□□□□ -1.49
MSX2P35548 TRPM6-203ENST00000361255 8271 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
MSX2P35548 NXF4-202ENST00000416098 1465 ntBASIC5.77□□□□□ -1.49
MSX2P35548 AC006042.3-201ENST00000454684 1469 ntBASIC5.77□□□□□ -1.49
MSX2P35548 OR2AT4-203ENST00000641541 8795 ntAPPRIS P1 BASIC5.77□□□□□ -1.49
MSX2P35548 AC132825.1-201ENST00000463573 2247 ntBASIC5.76□□□□□ -1.49
MSX2P35548 SLAMF6-202ENST00000368057 2712 ntAPPRIS ALT2 TSL 1 (best) BASIC5.76□□□□□ -1.49
MSX2P35548 AC083837.1-201ENST00000565297 2994 ntBASIC5.76□□□□□ -1.49
MSX2P35548 GTF2IP4-201ENST00000453092 2054 ntBASIC5.76□□□□□ -1.49
MSX2P35548 CASP5-201ENST00000260315 1414 ntTSL 5 BASIC5.76□□□□□ -1.49
MSX2P35548 ARHGEF38-201ENST00000265154 1437 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
MSX2P35548 ERAP2-202ENST00000437043 5705 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
MSX2P35548 TDRD5-202ENST00000367614 3632 ntAPPRIS P3 TSL 2 BASIC5.76□□□□□ -1.49
MSX2P35548 MTO1-212ENST00000498286 10857 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
MSX2P35548 RNF145-201ENST00000274542 3364 ntTSL 2 BASIC5.76□□□□□ -1.49
MSX2P35548 ATF7IP2-201ENST00000324570 3396 ntTSL 5 BASIC5.76□□□□□ -1.49
MSX2P35548 TNFSF11-202ENST00000358545 1520 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
MSX2P35548 LY96-201ENST00000284818 607 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
MSX2P35548 OR6P1-201ENST00000334632 954 ntAPPRIS P1 BASIC5.76□□□□□ -1.49
MSX2P35548 DEFB106A-201ENST00000335186 303 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
MSX2P35548 DEFB106B-201ENST00000335479 316 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
MSX2P35548 RPL39-201ENST00000361575 401 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
MSX2P35548 RNU1-87P-201ENST00000363727 170 ntBASIC5.76□□□□□ -1.49
MSX2P35548 LYZL1-201ENST00000375500 815 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
MSX2P35548 COMMD6-204ENST00000377619 594 ntTSL 2 BASIC5.76□□□□□ -1.49
MSX2P35548 IGKC-201ENST00000390237 523 ntAPPRIS P1 BASIC5.76□□□□□ -1.49
MSX2P35548 RPL10P10-201ENST00000403509 664 ntBASIC5.76□□□□□ -1.49
MSX2P35548 TANK-206ENST00000406287 875 ntTSL 5 BASIC5.76□□□□□ -1.49
MSX2P35548 AL451061.1-201ENST00000407887 862 ntBASIC5.76□□□□□ -1.49
MSX2P35548 NUTM2A-AS1-203ENST00000413961 501 ntTSL 3 BASIC5.76□□□□□ -1.49
MSX2P35548 AC007879.3-201ENST00000417096 556 ntTSL 4 BASIC5.76□□□□□ -1.49
MSX2P35548 Z75741.2-201ENST00000417272 1167 ntBASIC5.76□□□□□ -1.49
MSX2P35548 AL512363.1-201ENST00000425089 586 ntTSL 2 BASIC5.76□□□□□ -1.49
MSX2P35548 RAC1P8-201ENST00000427086 527 ntBASIC5.76□□□□□ -1.49
MSX2P35548 E2F6P1-201ENST00000428850 745 ntBASIC5.76□□□□□ -1.49
MSX2P35548 LINC02476-202ENST00000431071 559 ntTSL 4 BASIC5.76□□□□□ -1.49
MSX2P35548 RPL3P11-201ENST00000434028 1146 ntBASIC5.76□□□□□ -1.49
MSX2P35548 YWHAZP7-201ENST00000436906 631 ntBASIC5.76□□□□□ -1.49
MSX2P35548 RPS24P1-201ENST00000438550 371 ntBASIC5.76□□□□□ -1.49
MSX2P35548 MIR205HG-206ENST00000440276 539 ntTSL 5 BASIC5.76□□□□□ -1.49
MSX2P35548 E2F6P3-201ENST00000441743 743 ntBASIC5.76□□□□□ -1.49
MSX2P35548 AL512380.1-202ENST00000447728 543 ntTSL 5 BASIC5.76□□□□□ -1.49
MSX2P35548 AC005008.2-202ENST00000447776 439 ntTSL 3 BASIC5.76□□□□□ -1.49
MSX2P35548 RPL7P32-201ENST00000457119 744 ntBASIC5.76□□□□□ -1.49
MSX2P35548 ACA64.4-201ENST00000459070 127 ntBASIC5.76□□□□□ -1.49
MSX2P35548 AC007003.1-201ENST00000472463 736 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
MSX2P35548 LINC00888-204ENST00000487386 421 ntBASIC5.76□□□□□ -1.49
MSX2P35548 SMR3B-202ENST00000504825 489 ntAPPRIS P1 TSL 3 BASIC5.76□□□□□ -1.49
MSX2P35548 AC139713.2-213ENST00000505000 796 ntTSL 2 BASIC5.76□□□□□ -1.49
MSX2P35548 AC021146.7-201ENST00000509604 775 ntBASIC5.76□□□□□ -1.49
MSX2P35548 AZIN1-AS1-208ENST00000519257 619 ntTSL 3 BASIC5.76□□□□□ -1.49
MSX2P35548 MAL2-207ENST00000522828 603 ntTSL 3 BASIC5.76□□□□□ -1.49
MSX2P35548 AC022509.1-202ENST00000537525 494 ntTSL 4 BASIC5.76□□□□□ -1.49
MSX2P35548 LINC02402-201ENST00000550337 1212 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
MSX2P35548 AC126323.4-201ENST00000566935 234 ntBASIC5.76□□□□□ -1.49
MSX2P35548 AC022655.1-201ENST00000578039 288 ntTSL 3 BASIC5.76□□□□□ -1.49
MSX2P35548 AC008794.1-201ENST00000593063 560 ntTSL 4 BASIC5.76□□□□□ -1.49
MSX2P35548 LINC01676-204ENST00000595309 871 ntTSL 5 BASIC5.76□□□□□ -1.49
MSX2P35548 ZNF415-218ENST00000599261 601 ntTSL 3 BASIC5.76□□□□□ -1.49
MSX2P35548 BNIP3P30-201ENST00000601184 574 ntBASIC5.76□□□□□ -1.49
MSX2P35548 AC073648.5-201ENST00000603502 305 ntBASIC5.76□□□□□ -1.49
MSX2P35548 AC007204.2-201ENST00000615022 616 ntBASIC5.76□□□□□ -1.49
MSX2P35548 AL590240.3-201ENST00000621416 943 ntBASIC5.76□□□□□ -1.49
MSX2P35548 AC007494.3-201ENST00000624660 743 ntBASIC5.76□□□□□ -1.49
MSX2P35548 AL160394.1-201ENST00000624765 724 ntBASIC5.76□□□□□ -1.49
MSX2P35548 SNX18P12-201ENST00000624821 759 ntBASIC5.76□□□□□ -1.49
MSX2P35548 AC098617.1-218ENST00000628836 624 ntTSL 5 BASIC5.76□□□□□ -1.49
MSX2P35548 AF067845.4-201ENST00000633198 480 ntTSL 3 BASIC5.76□□□□□ -1.49
MSX2P35548 FP325313.1-201ENST00000638228 703 ntBASIC5.76□□□□□ -1.49
MSX2P35548 SATB1-209ENST00000454909 3755 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
MSX2P35548 AC006288.1-201ENST00000565320 1463 ntTSL 3 BASIC5.76□□□□□ -1.49
MSX2P35548 ZNF480-201ENST00000334564 1843 ntAPPRIS ALT2 TSL 2 BASIC5.76□□□□□ -1.49
MSX2P35548 SAMD9L-202ENST00000411955 5831 ntAPPRIS P1 TSL 5 BASIC5.76□□□□□ -1.49
MSX2P35548 EOGT-208ENST00000540764 1584 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
MSX2P35548 GRXCR2-201ENST00000377976 2002 ntAPPRIS P1 TSL 2 BASIC5.75□□□□□ -1.49
MSX2P35548 FAM135A-202ENST00000361499 5042 ntAPPRIS ALT1 TSL 1 (best) BASIC5.75□□□□□ -1.49
MSX2P35548 ADAM24P-201ENST00000398655 2101 ntBASIC5.75□□□□□ -1.49
MSX2P35548 ZNF418-212ENST00000616958 2212 ntAPPRIS P3 TSL 1 (best) BASIC5.75□□□□□ -1.49
MSX2P35548 AC016583.1-201ENST00000624221 2431 ntBASIC5.75□□□□□ -1.49
MSX2P35548 AC022325.1-201ENST00000502748 2199 ntBASIC5.75□□□□□ -1.49
MSX2P35548 SPINK7-201ENST00000274565 557 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
MSX2P35548 FCER1G-201ENST00000289902 591 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
MSX2P35548 ALKAL2-201ENST00000344414 449 ntTSL 3 BASIC5.75□□□□□ -1.49
MSX2P35548 RNA5SP308-201ENST00000362532 115 ntBASIC5.75□□□□□ -1.49
MSX2P35548 RSPO3-202ENST00000368317 1290 ntTSL 2 BASIC5.75□□□□□ -1.49
MSX2P35548 TXNDC8-203ENST00000374511 472 ntAPPRIS ALT2 TSL 5 BASIC5.75□□□□□ -1.49
MSX2P35548 RNU6-413P-201ENST00000384115 107 ntBASIC5.75□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 74.5 ms