Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 MORF4L1P4-201ENST00000450245 976 ntBASIC5.24□□□□□ -1.57
MSH3P20585 SEPT7P3-201ENST00000455017 621 ntBASIC5.24□□□□□ -1.57
MSH3P20585 SLC9A9-AS2-201ENST00000490153 327 ntTSL 5 BASIC5.24□□□□□ -1.57
MSH3P20585 LINC02513-201ENST00000503465 500 ntTSL 2 BASIC5.24□□□□□ -1.57
MSH3P20585 MTND3P3-201ENST00000505004 126 ntBASIC5.24□□□□□ -1.57
MSH3P20585 AC024558.1-201ENST00000505008 528 ntBASIC5.24□□□□□ -1.57
MSH3P20585 PGAM1P13-201ENST00000507497 754 ntBASIC5.24□□□□□ -1.57
MSH3P20585 AC019133.1-201ENST00000508292 420 ntTSL 3 BASIC5.24□□□□□ -1.57
MSH3P20585 SPINK13-203ENST00000512953 1022 ntAPPRIS P2 TSL 2 BASIC5.24□□□□□ -1.57
MSH3P20585 EIF3KP3-201ENST00000514461 639 ntBASIC5.24□□□□□ -1.57
MSH3P20585 AC090541.1-201ENST00000519803 467 ntTSL 3 BASIC5.24□□□□□ -1.57
MSH3P20585 AC092709.1-201ENST00000521355 1045 ntBASIC5.24□□□□□ -1.57
MSH3P20585 PCED1B-AS1-210ENST00000552975 378 ntTSL 2 BASIC5.24□□□□□ -1.57
MSH3P20585 AL136520.1-202ENST00000555494 763 ntBASIC5.24□□□□□ -1.57
MSH3P20585 CLMN-206ENST00000556441 452 ntTSL 5 BASIC5.24□□□□□ -1.57
MSH3P20585 C14orf2-211ENST00000557040 472 ntAPPRIS P1 TSL 3 BASIC5.24□□□□□ -1.57
MSH3P20585 AC069307.1-201ENST00000602820 447 ntBASIC5.24□□□□□ -1.57
MSH3P20585 AC009597.2-201ENST00000604659 592 ntBASIC5.24□□□□□ -1.57
MSH3P20585 SATB1-AS1-227ENST00000625533 743 ntTSL 5 BASIC5.24□□□□□ -1.57
MSH3P20585 RUVBL2-214ENST00000640699 153 ntTSL 5 BASIC5.24□□□□□ -1.57
MSH3P20585 SUPT3H-203ENST00000371460 2389 ntAPPRIS P4 TSL 1 (best) BASIC5.24□□□□□ -1.57
MSH3P20585 WDR72-202ENST00000396328 7507 ntAPPRIS P2 TSL 1 (best) BASIC5.24□□□□□ -1.57
MSH3P20585 TSPAN6-204ENST00000612152 3796 ntTSL 5 BASIC5.24□□□□□ -1.57
MSH3P20585 DCLK1-204ENST00000379893 4612 ntTSL 2 BASIC5.24□□□□□ -1.57
MSH3P20585 AC010127.1-209ENST00000447809 2305 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
MSH3P20585 UGP2-203ENST00000445915 1955 ntTSL 2 BASIC5.24□□□□□ -1.57
MSH3P20585 ATP1B4-202ENST00000361319 3856 ntAPPRIS P3 TSL 1 (best) BASIC5.23□□□□□ -1.57
MSH3P20585 ABCA13-204ENST00000435803 17184 ntAPPRIS P2 TSL 1 (best) BASIC5.23□□□□□ -1.57
MSH3P20585 PPEF1-201ENST00000349874 2687 ntTSL 5 BASIC5.23□□□□□ -1.57
MSH3P20585 XKR4-201ENST00000327381 19880 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
MSH3P20585 LRRC37A-203ENST00000496930 3860 ntTSL 2 BASIC5.23□□□□□ -1.57
MSH3P20585 MPDZ-204ENST00000381022 7589 ntAPPRIS ALT2 TSL 5 BASIC5.23□□□□□ -1.57
MSH3P20585 OR9G4-201ENST00000302957 984 ntBASIC5.23□□□□□ -1.57
MSH3P20585 RNASE6-201ENST00000304677 1061 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
MSH3P20585 OR9K1P-201ENST00000326513 941 ntBASIC5.23□□□□□ -1.57
MSH3P20585 RNU6-618P-201ENST00000363518 112 ntBASIC5.23□□□□□ -1.57
MSH3P20585 RNU6-152P-201ENST00000384037 107 ntBASIC5.23□□□□□ -1.57
MSH3P20585 TRGV5-201ENST00000390344 552 ntAPPRIS P1 BASIC5.23□□□□□ -1.57
MSH3P20585 AF015720.1-201ENST00000412240 349 ntTSL 3 BASIC5.23□□□□□ -1.57
MSH3P20585 PSMA3-202ENST00000412908 908 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
MSH3P20585 AC096644.3-201ENST00000416788 338 ntBASIC5.23□□□□□ -1.57
MSH3P20585 LINC01889-201ENST00000430692 668 ntTSL 5 BASIC5.23□□□□□ -1.57
MSH3P20585 MRPS33P4-201ENST00000434892 317 ntBASIC5.23□□□□□ -1.57
MSH3P20585 AL512625.3-204ENST00000438699 1031 ntTSL 5 BASIC5.23□□□□□ -1.57
MSH3P20585 UBA52P7-201ENST00000486088 380 ntBASIC5.23□□□□□ -1.57
MSH3P20585 RPS21P4-201ENST00000487122 248 ntBASIC5.23□□□□□ -1.57
MSH3P20585 RN7SL30P-201ENST00000488416 306 ntBASIC5.23□□□□□ -1.57
MSH3P20585 PDCD10-216ENST00000492396 814 ntTSL 5 BASIC5.23□□□□□ -1.57
MSH3P20585 AC015864.1-201ENST00000496512 544 ntBASIC5.23□□□□□ -1.57
MSH3P20585 RPS4XP20-201ENST00000505751 772 ntBASIC5.23□□□□□ -1.57
MSH3P20585 SETP12-201ENST00000514068 805 ntBASIC5.23□□□□□ -1.57
MSH3P20585 AC112206.4-201ENST00000515142 405 ntBASIC5.23□□□□□ -1.57
MSH3P20585 RNU6-760P-201ENST00000516078 97 ntBASIC5.23□□□□□ -1.57
MSH3P20585 RNA5SP373-201ENST00000517271 95 ntBASIC5.23□□□□□ -1.57
MSH3P20585 AC021733.1-201ENST00000519786 325 ntTSL 3 BASIC5.23□□□□□ -1.57
MSH3P20585 CA1-224ENST00000542576 1236 ntAPPRIS P1 TSL 5 BASIC5.23□□□□□ -1.57
MSH3P20585 AC144548.2-201ENST00000550231 946 ntTSL 3 BASIC5.23□□□□□ -1.57
MSH3P20585 MGAT4C-206ENST00000552435 550 ntTSL 4 BASIC5.23□□□□□ -1.57
MSH3P20585 AC040958.1-201ENST00000561102 201 ntBASIC5.23□□□□□ -1.57
MSH3P20585 LINC00557-201ENST00000563184 1279 ntBASIC5.23□□□□□ -1.57
MSH3P20585 MTND2P13-201ENST00000577438 1039 ntBASIC5.23□□□□□ -1.57
MSH3P20585 AC011444.3-201ENST00000588342 325 ntTSL 3 BASIC5.23□□□□□ -1.57
MSH3P20585 AC040174.2-201ENST00000602701 465 ntBASIC5.23□□□□□ -1.57
MSH3P20585 SUMO2P15-201ENST00000604285 278 ntBASIC5.23□□□□□ -1.57
MSH3P20585 AC073111.2-201ENST00000605657 1075 ntBASIC5.23□□□□□ -1.57
MSH3P20585 DARS-AS1-220ENST00000607985 660 ntTSL 5 BASIC5.23□□□□□ -1.57
MSH3P20585 AC097376.2-202ENST00000608345 433 ntTSL 3 BASIC5.23□□□□□ -1.57
MSH3P20585 TADA2A-212ENST00000620367 1043 ntTSL 5 BASIC5.23□□□□□ -1.57
MSH3P20585 SMARCA2-206ENST00000382185 1584 ntTSL 2 BASIC5.23□□□□□ -1.57
MSH3P20585 KMO-203ENST00000366558 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC5.23□□□□□ -1.57
MSH3P20585 CEP164P1-202ENST00000456938 2472 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
MSH3P20585 FYB1-201ENST00000351578 4750 ntAPPRIS P3 TSL 1 (best) BASIC5.23□□□□□ -1.57
MSH3P20585 AL445623.2-201ENST00000640307 4805 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
MSH3P20585 OR8J3-204ENST00000642058 3806 ntAPPRIS P1 BASIC5.23□□□□□ -1.57
MSH3P20585 DNAH8-201ENST00000327475 14360 ntAPPRIS P2 TSL 5 BASIC5.23□□□□□ -1.57
MSH3P20585 AC010531.4-202ENST00000569872 1718 ntTSL 2 BASIC5.23□□□□□ -1.57
MSH3P20585 AC011493.1-201ENST00000596753 1632 ntBASIC5.23□□□□□ -1.57
MSH3P20585 C5orf42-201ENST00000425232 11199 ntAPPRIS P2 TSL 5 BASIC5.22□□□□□ -1.57
MSH3P20585 AC092747.4-201ENST00000620519 1861 ntBASIC5.22□□□□□ -1.57
MSH3P20585 OR4F5-202ENST00000641515 2618 ntAPPRIS P1 BASIC5.22□□□□□ -1.57
MSH3P20585 KCNJ16-204ENST00000585558 4014 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
MSH3P20585 NPM1-202ENST00000351986 1237 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
MSH3P20585 OR8V1P-201ENST00000395193 873 ntBASIC5.22□□□□□ -1.57
MSH3P20585 UBE2V1P15-201ENST00000407776 448 ntBASIC5.22□□□□□ -1.57
MSH3P20585 COX5BP7-201ENST00000414780 274 ntBASIC5.22□□□□□ -1.57
MSH3P20585 PCNPP4-201ENST00000414817 517 ntBASIC5.22□□□□□ -1.57
MSH3P20585 GTF3AP1-201ENST00000416942 1004 ntBASIC5.22□□□□□ -1.57
MSH3P20585 MARK2P12-201ENST00000420129 585 ntBASIC5.22□□□□□ -1.57
MSH3P20585 AL355433.1-201ENST00000422804 300 ntBASIC5.22□□□□□ -1.57
MSH3P20585 LINC01731-201ENST00000428035 420 ntTSL 3 BASIC5.22□□□□□ -1.57
MSH3P20585 Z82198.2-201ENST00000434741 567 ntTSL 4 BASIC5.22□□□□□ -1.57
MSH3P20585 TCEA1P3-201ENST00000443005 880 ntBASIC5.22□□□□□ -1.57
MSH3P20585 AC005772.1-201ENST00000446671 976 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
MSH3P20585 CBX1P5-201ENST00000475330 559 ntBASIC5.22□□□□□ -1.57
MSH3P20585 RPL7P6-201ENST00000480903 738 ntBASIC5.22□□□□□ -1.57
MSH3P20585 AC091544.1-201ENST00000484702 348 ntBASIC5.22□□□□□ -1.57
MSH3P20585 RPL7P41-201ENST00000485823 957 ntBASIC5.22□□□□□ -1.57
MSH3P20585 COX6B1P2-201ENST00000489624 230 ntBASIC5.22□□□□□ -1.57
MSH3P20585 ZBED3-AS1-209ENST00000512213 681 ntTSL 3 BASIC5.22□□□□□ -1.57
MSH3P20585 AC012400.1-201ENST00000518452 381 ntBASIC5.22□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 143.4 ms