Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 LINC01506-201ENST00000432148 495 ntTSL 2 BASIC4.79□□□□□ -1.64
SDC1P18827 AC097523.2-201ENST00000435551 652 ntBASIC4.79□□□□□ -1.64
SDC1P18827 ZDHHC20P1-204ENST00000435787 423 ntBASIC4.79□□□□□ -1.64
SDC1P18827 FAM237A-201ENST00000441223 773 ntAPPRIS P1 TSL 2 BASIC4.79□□□□□ -1.64
SDC1P18827 AL121917.1-201ENST00000441270 893 ntTSL 5 BASIC4.79□□□□□ -1.64
SDC1P18827 TTTY22-201ENST00000445253 427 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
SDC1P18827 LINC01828-201ENST00000445514 531 ntTSL 4 BASIC4.79□□□□□ -1.64
SDC1P18827 AP000402.1-201ENST00000446404 540 ntTSL 3 BASIC4.79□□□□□ -1.64
SDC1P18827 AC068492.1-201ENST00000448672 469 ntTSL 3 BASIC4.79□□□□□ -1.64
SDC1P18827 TFDP2-211ENST00000479040 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC4.79□□□□□ -1.64
SDC1P18827 UBA52P7-201ENST00000486088 380 ntBASIC4.79□□□□□ -1.64
SDC1P18827 RPL7P51-201ENST00000490532 749 ntBASIC4.79□□□□□ -1.64
SDC1P18827 AC023424.1-201ENST00000496058 459 ntBASIC4.79□□□□□ -1.64
SDC1P18827 AC124242.1-202ENST00000499554 1052 ntTSL 3 BASIC4.79□□□□□ -1.64
SDC1P18827 AC005674.1-201ENST00000503493 459 ntTSL 3 BASIC4.79□□□□□ -1.64
SDC1P18827 AC010350.1-201ENST00000504908 231 ntBASIC4.79□□□□□ -1.64
SDC1P18827 EGFLAM-AS3-201ENST00000505267 549 ntTSL 5 BASIC4.79□□□□□ -1.64
SDC1P18827 AC079858.1-201ENST00000507842 448 ntTSL 3 BASIC4.79□□□□□ -1.64
SDC1P18827 AC019133.1-201ENST00000508292 420 ntTSL 3 BASIC4.79□□□□□ -1.64
SDC1P18827 AC027308.1-201ENST00000517993 110 ntBASIC4.79□□□□□ -1.64
SDC1P18827 OR8A2P-201ENST00000528631 952 ntBASIC4.79□□□□□ -1.64
SDC1P18827 AC090023.2-201ENST00000540875 545 ntTSL 3 BASIC4.79□□□□□ -1.64
SDC1P18827 AL049830.4-201ENST00000555149 351 ntBASIC4.79□□□□□ -1.64
SDC1P18827 SP2-AS1-204ENST00000585280 405 ntTSL 3 BASIC4.79□□□□□ -1.64
SDC1P18827 AC095055.1-201ENST00000603472 1113 ntBASIC4.79□□□□□ -1.64
SDC1P18827 AC090953.1-201ENST00000604305 1092 ntBASIC4.79□□□□□ -1.64
SDC1P18827 BNIP3P7-201ENST00000605641 516 ntBASIC4.79□□□□□ -1.64
SDC1P18827 AL591926.2-202ENST00000615199 719 ntTSL 5 BASIC4.79□□□□□ -1.64
SDC1P18827 AL049767.1-202ENST00000637826 242 ntBASIC4.79□□□□□ -1.64
SDC1P18827 ADCY10-201ENST00000367848 5055 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
SDC1P18827 ATP2C1-205ENST00000504381 3498 ntTSL 2 BASIC4.79□□□□□ -1.64
SDC1P18827 SCARNA15-201ENST00000607520 4325 ntBASIC4.79□□□□□ -1.64
SDC1P18827 WDR35-202ENST00000345530 6960 ntAPPRIS ALT1 TSL 1 (best) BASIC4.79□□□□□ -1.64
SDC1P18827 CLEC12A-203ENST00000355690 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC4.79□□□□□ -1.64
SDC1P18827 AC123767.1-201ENST00000519537 1439 ntTSL 5 BASIC4.79□□□□□ -1.64
SDC1P18827 RANBP3L-202ENST00000502994 2278 ntAPPRIS ALT1 TSL 2 BASIC4.79□□□□□ -1.64
SDC1P18827 AL033384.1-202ENST00000431554 3104 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
SDC1P18827 PEAK1-204ENST00000560626 19217 ntAPPRIS P1 TSL 5 BASIC4.78□□□□□ -1.64
SDC1P18827 TENM1-202ENST00000422452 12891 ntAPPRIS ALT1 TSL 1 (best) BASIC4.78□□□□□ -1.64
SDC1P18827 FNIP1-202ENST00000307968 6388 ntAPPRIS ALT2 TSL 5 BASIC4.78□□□□□ -1.64
SDC1P18827 DOCK9-207ENST00000442173 7643 ntAPPRIS ALT2 TSL 5 BASIC4.78□□□□□ -1.64
SDC1P18827 GRIA2-202ENST00000296526 5621 ntAPPRIS P3 TSL 1 (best) BASIC4.78□□□□□ -1.64
SDC1P18827 PDE4B-201ENST00000329654 3998 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
SDC1P18827 ASAH2-204ENST00000447815 2311 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
SDC1P18827 GYS2-201ENST00000261195 3132 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
SDC1P18827 ZNF83-203ENST00000541777 3743 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
SDC1P18827 SMAD4-202ENST00000398417 8495 ntAPPRIS P1 TSL 5 BASIC4.78□□□□□ -1.64
SDC1P18827 CFI-202ENST00000394635 2053 ntAPPRIS ALT2 TSL 2 BASIC4.78□□□□□ -1.64
SDC1P18827 LINC00704-201ENST00000430998 1478 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
SDC1P18827 MTHFD2P5-201ENST00000320415 844 ntBASIC4.78□□□□□ -1.64
SDC1P18827 SNORA73.1-201ENST00000363107 205 ntBASIC4.78□□□□□ -1.64
SDC1P18827 RN7SKP160-201ENST00000363804 340 ntBASIC4.78□□□□□ -1.64
SDC1P18827 AC012358.3-203ENST00000366287 1110 ntTSL 3 BASIC4.78□□□□□ -1.64
SDC1P18827 RNU6-891P-201ENST00000384280 111 ntBASIC4.78□□□□□ -1.64
SDC1P18827 SNORA70.10-201ENST00000384515 134 ntBASIC4.78□□□□□ -1.64
SDC1P18827 ATP5HP3-201ENST00000396994 486 ntBASIC4.78□□□□□ -1.64
SDC1P18827 PRR21-201ENST00000408934 1170 ntAPPRIS P1 BASIC4.78□□□□□ -1.64
SDC1P18827 NPM1P4-201ENST00000414095 812 ntBASIC4.78□□□□□ -1.64
SDC1P18827 ATP6V1G1P7-201ENST00000415853 349 ntBASIC4.78□□□□□ -1.64
SDC1P18827 SOS1-IT1-201ENST00000420644 539 ntTSL 5 BASIC4.78□□□□□ -1.64
SDC1P18827 LINC00626-201ENST00000420691 955 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
SDC1P18827 AC090505.2-201ENST00000427064 464 ntTSL 3 BASIC4.78□□□□□ -1.64
SDC1P18827 OR52B5P-201ENST00000435337 951 ntBASIC4.78□□□□□ -1.64
SDC1P18827 AC073052.1-201ENST00000440417 714 ntBASIC4.78□□□□□ -1.64
SDC1P18827 AC245047.2-201ENST00000441060 530 ntBASIC4.78□□□□□ -1.64
SDC1P18827 HMGN1P8-201ENST00000463578 288 ntBASIC4.78□□□□□ -1.64
SDC1P18827 DAP3-209ENST00000465375 729 ntTSL 2 BASIC4.78□□□□□ -1.64
SDC1P18827 RPL7P39-201ENST00000481157 744 ntBASIC4.78□□□□□ -1.64
SDC1P18827 LINC01192-206ENST00000489012 818 ntTSL 5 BASIC4.78□□□□□ -1.64
SDC1P18827 AC024558.1-201ENST00000505008 528 ntBASIC4.78□□□□□ -1.64
SDC1P18827 HMGB3P16-201ENST00000508037 287 ntBASIC4.78□□□□□ -1.64
SDC1P18827 NPM1P52-201ENST00000518264 846 ntBASIC4.78□□□□□ -1.64
SDC1P18827 AC090541.1-201ENST00000519803 467 ntTSL 3 BASIC4.78□□□□□ -1.64
SDC1P18827 AP002373.2-201ENST00000541631 1060 ntBASIC4.78□□□□□ -1.64
SDC1P18827 BNIP3P1-201ENST00000547295 580 ntBASIC4.78□□□□□ -1.64
SDC1P18827 AC078880.2-201ENST00000547948 843 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
SDC1P18827 AC073525.1-201ENST00000549762 543 ntTSL 3 BASIC4.78□□□□□ -1.64
SDC1P18827 DPRXP4-201ENST00000578053 568 ntBASIC4.78□□□□□ -1.64
SDC1P18827 MIR4472-2-201ENST00000582069 67 ntBASIC4.78□□□□□ -1.64
SDC1P18827 AP002505.2-201ENST00000623585 696 ntBASIC4.78□□□□□ -1.64
SDC1P18827 CTSLP2-203ENST00000628708 493 ntTSL 5 BASIC4.78□□□□□ -1.64
SDC1P18827 OR52B5P-202ENST00000641118 1110 ntBASIC4.78□□□□□ -1.64
SDC1P18827 AC104793.1-201ENST00000508189 2840 ntTSL 2 BASIC4.78□□□□□ -1.64
SDC1P18827 A1CF-207ENST00000395495 9400 ntTSL 5 BASIC4.78□□□□□ -1.64
SDC1P18827 ATF7IP-214ENST00000540793 4142 ntAPPRIS P3 TSL 1 (best) BASIC4.78□□□□□ -1.64
SDC1P18827 EDIL3-202ENST00000380138 4244 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
SDC1P18827 TNRC6B-206ENST00000454349 18279 ntAPPRIS ALT2 TSL 2 BASIC4.78□□□□□ -1.64
SDC1P18827 HTR1F-201ENST00000319595 3140 ntAPPRIS P1 BASIC4.77□□□□□ -1.65
SDC1P18827 RDH10-AS1-201ENST00000514599 3261 ntTSL 2 BASIC4.77□□□□□ -1.65
SDC1P18827 CKAP5-202ENST00000354558 6428 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
SDC1P18827 SLC9C1-201ENST00000305815 4172 ntAPPRIS P3 TSL 2 BASIC4.77□□□□□ -1.65
SDC1P18827 OR56A4-201ENST00000330728 1209 ntBASIC4.77□□□□□ -1.65
SDC1P18827 RN7SKP162-201ENST00000363605 345 ntBASIC4.77□□□□□ -1.65
SDC1P18827 SYCE3-202ENST00000406915 448 ntAPPRIS P1 TSL 2 BASIC4.77□□□□□ -1.65
SDC1P18827 Z86062.2-201ENST00000411442 380 ntTSL 5 BASIC4.77□□□□□ -1.65
SDC1P18827 SETP15-201ENST00000412724 337 ntBASIC4.77□□□□□ -1.65
SDC1P18827 AC068483.1-201ENST00000413403 660 ntTSL 3 BASIC4.77□□□□□ -1.65
SDC1P18827 AC011754.1-201ENST00000415201 491 ntTSL 5 BASIC4.77□□□□□ -1.65
SDC1P18827 AC009502.1-203ENST00000416861 496 ntTSL 2 BASIC4.77□□□□□ -1.65
SDC1P18827 QRSL1P2-201ENST00000418582 964 ntBASIC4.77□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 85.6 ms