Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 AL024498.1-201ENST00000606522 1100 ntTSL 3 BASIC4.98□□□□□ -1.61
HOXC4P09017 AC008833.1-201ENST00000611633 691 ntBASIC4.98□□□□□ -1.61
HOXC4P09017 AP001784.1-201ENST00000624107 428 ntBASIC4.98□□□□□ -1.61
HOXC4P09017 SPTY2D1-AS1-204ENST00000634992 373 ntAPPRIS P5 TSL 5 BASIC4.98□□□□□ -1.61
HOXC4P09017 PLCB1-211ENST00000617005 6458 ntTSL 5 BASIC4.98□□□□□ -1.61
HOXC4P09017 SCN2A-203ENST00000375437 8792 ntAPPRIS ALT1 TSL 5 BASIC4.98□□□□□ -1.61
HOXC4P09017 TOX3-202ENST00000407228 3124 ntAPPRIS ALT2 TSL 2 BASIC4.98□□□□□ -1.61
HOXC4P09017 OR8B3-202ENST00000641139 2170 ntAPPRIS P1 BASIC4.98□□□□□ -1.61
HOXC4P09017 KMT5B-215ENST00000615954 4306 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
HOXC4P09017 PNPLA4-203ENST00000444736 2752 ntAPPRIS P1 TSL 4 BASIC4.98□□□□□ -1.61
HOXC4P09017 PPEF1-202ENST00000361511 2890 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
HOXC4P09017 B3GALT2-201ENST00000367434 3274 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
HOXC4P09017 CASC8-203ENST00000502082 1420 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
HOXC4P09017 STXBP4-203ENST00000405898 2229 ntTSL 5 BASIC4.97□□□□□ -1.61
HOXC4P09017 ZNF334-203ENST00000593880 2635 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
HOXC4P09017 ZNF850-203ENST00000614887 7625 ntAPPRIS ALT2 TSL 1 (best) BASIC4.97□□□□□ -1.61
HOXC4P09017 NCOA3-203ENST00000372004 7939 ntAPPRIS ALT2 TSL 1 (best) BASIC4.97□□□□□ -1.61
HOXC4P09017 HIF1AN-201ENST00000299163 13011 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
HOXC4P09017 SLC26A3-201ENST00000340010 2863 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
HOXC4P09017 OSBPL9P1-201ENST00000604744 1469 ntBASIC4.97□□□□□ -1.61
HOXC4P09017 PIGK-203ENST00000445065 4318 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
HOXC4P09017 AC103591.2-201ENST00000265259 766 ntBASIC4.97□□□□□ -1.61
HOXC4P09017 OR8H3-201ENST00000313472 939 ntAPPRIS P1 BASIC4.97□□□□□ -1.61
HOXC4P09017 CCNB3-202ENST00000348603 1201 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
HOXC4P09017 GCSAML-201ENST00000366488 3820 ntAPPRIS P3 TSL 1 (best) BASIC4.97□□□□□ -1.61
HOXC4P09017 CCNB3-203ENST00000376038 1201 ntTSL 5 BASIC4.97□□□□□ -1.61
HOXC4P09017 RNA5SP87-201ENST00000384155 118 ntBASIC4.97□□□□□ -1.61
HOXC4P09017 AL136116.2-201ENST00000404020 785 ntBASIC4.97□□□□□ -1.61
HOXC4P09017 SNORA77-201ENST00000408716 125 ntBASIC4.97□□□□□ -1.61
HOXC4P09017 AL139128.1-201ENST00000413921 941 ntBASIC4.97□□□□□ -1.61
HOXC4P09017 LINC00364-201ENST00000415120 611 ntTSL 3 BASIC4.97□□□□□ -1.61
HOXC4P09017 AC079809.1-201ENST00000415468 276 ntBASIC4.97□□□□□ -1.61
HOXC4P09017 AL139819.1-201ENST00000429420 471 ntTSL 3 BASIC4.97□□□□□ -1.61
HOXC4P09017 AL034405.1-201ENST00000432062 526 ntTSL 2 BASIC4.97□□□□□ -1.61
HOXC4P09017 RPL7P11-201ENST00000437586 658 ntBASIC4.97□□□□□ -1.61
HOXC4P09017 AL137845.2-201ENST00000444292 988 ntBASIC4.97□□□□□ -1.61
HOXC4P09017 RPS3AP53-201ENST00000454716 778 ntBASIC4.97□□□□□ -1.61
HOXC4P09017 AC092324.1-201ENST00000468671 324 ntBASIC4.97□□□□□ -1.61
HOXC4P09017 AC112184.1-201ENST00000505179 312 ntBASIC4.97□□□□□ -1.61
HOXC4P09017 GAPDHP56-201ENST00000506031 988 ntBASIC4.97□□□□□ -1.61
HOXC4P09017 HAPLN1-206ENST00000514416 1145 ntTSL 5 BASIC4.97□□□□□ -1.61
HOXC4P09017 LINC02313-201ENST00000553330 550 ntTSL 2 BASIC4.97□□□□□ -1.61
HOXC4P09017 NDUFB4P11-201ENST00000560510 395 ntBASIC4.97□□□□□ -1.61
HOXC4P09017 DPRXP4-201ENST00000578053 568 ntBASIC4.97□□□□□ -1.61
HOXC4P09017 AC022884.2-201ENST00000578535 580 ntBASIC4.97□□□□□ -1.61
HOXC4P09017 AC018695.5-201ENST00000605872 315 ntBASIC4.97□□□□□ -1.61
HOXC4P09017 Metazoa_SRP.181-201ENST00000616636 288 ntBASIC4.97□□□□□ -1.61
HOXC4P09017 AC002384.2-201ENST00000636036 790 ntTSL 3 BASIC4.97□□□□□ -1.61
HOXC4P09017 ZNF790-201ENST00000356725 3037 ntAPPRIS P1 TSL 2 BASIC4.97□□□□□ -1.61
HOXC4P09017 TOPORSLP1-201ENST00000467693 2102 ntBASIC4.97□□□□□ -1.61
HOXC4P09017 FHL5-201ENST00000326771 2031 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
HOXC4P09017 AC093155.3-201ENST00000370548 2013 ntAPPRIS P1 TSL 2 BASIC4.97□□□□□ -1.61
HOXC4P09017 WEE2-201ENST00000397541 3061 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
HOXC4P09017 CLSPN-206ENST00000520551 4010 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
HOXC4P09017 ZNF230-201ENST00000429154 4115 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.61
HOXC4P09017 RNMT-202ENST00000383314 6250 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.61
HOXC4P09017 TXNDC8-201ENST00000374507 1787 ntTSL 1 (best) BASIC4.96□□□□□ -1.61
HOXC4P09017 C2orf66-201ENST00000342506 1669 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.61
HOXC4P09017 SMC2-203ENST00000374793 5909 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
HOXC4P09017 CDC42BPA-204ENST00000366767 9320 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
HOXC4P09017 C2CD6-202ENST00000439140 5512 ntAPPRIS ALT2 TSL 1 (best) BASIC4.96□□□□□ -1.62
HOXC4P09017 MYO16-201ENST00000251041 3492 ntTSL 5 BASIC4.96□□□□□ -1.62
HOXC4P09017 RABGAP1L-205ENST00000367687 1849 ntTSL 2 BASIC4.96□□□□□ -1.62
HOXC4P09017 VCAM1-202ENST00000347652 2812 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
HOXC4P09017 ARSD-AS1-201ENST00000414053 816 ntTSL 2 BASIC4.96□□□□□ -1.62
HOXC4P09017 PCNPP4-201ENST00000414817 517 ntBASIC4.96□□□□□ -1.62
HOXC4P09017 RPL12P43-201ENST00000420608 499 ntBASIC4.96□□□□□ -1.62
HOXC4P09017 AC104837.2-201ENST00000427236 424 ntBASIC4.96□□□□□ -1.62
HOXC4P09017 AL731574.1-201ENST00000447757 456 ntTSL 5 BASIC4.96□□□□□ -1.62
HOXC4P09017 TCEA1P1-201ENST00000449716 880 ntBASIC4.96□□□□□ -1.62
HOXC4P09017 RNU7-157P-201ENST00000459600 66 ntBASIC4.96□□□□□ -1.62
HOXC4P09017 RPL35AP28-201ENST00000459730 331 ntBASIC4.96□□□□□ -1.62
HOXC4P09017 TFDP2-211ENST00000479040 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC4.96□□□□□ -1.62
HOXC4P09017 OR11I1P-201ENST00000486033 954 ntBASIC4.96□□□□□ -1.62
HOXC4P09017 AC005412.2-201ENST00000492004 341 ntBASIC4.96□□□□□ -1.62
HOXC4P09017 LINC02224-201ENST00000505706 584 ntTSL 4 BASIC4.96□□□□□ -1.62
HOXC4P09017 AC115622.1-201ENST00000509628 587 ntTSL 3 BASIC4.96□□□□□ -1.62
HOXC4P09017 AC025437.5-201ENST00000522769 314 ntTSL 3 BASIC4.96□□□□□ -1.62
HOXC4P09017 TVP23CP2-201ENST00000571473 623 ntBASIC4.96□□□□□ -1.62
HOXC4P09017 PPIAL4F-202ENST00000581138 660 ntAPPRIS P1 BASIC4.96□□□□□ -1.62
HOXC4P09017 PPIAL4E-201ENST00000581164 785 ntAPPRIS P1 BASIC4.96□□□□□ -1.62
HOXC4P09017 AL121989.1-201ENST00000585888 746 ntTSL 3 BASIC4.96□□□□□ -1.62
HOXC4P09017 AC004596.1-201ENST00000586560 528 ntTSL 3 BASIC4.96□□□□□ -1.62
HOXC4P09017 Mico1.1-201ENST00000611698 204 ntBASIC4.96□□□□□ -1.62
HOXC4P09017 AC087385.3-201ENST00000620477 187 ntBASIC4.96□□□□□ -1.62
HOXC4P09017 SMC2-202ENST00000374787 4266 ntAPPRIS P1 TSL 2 BASIC4.96□□□□□ -1.62
HOXC4P09017 ZNF567-203ENST00000585696 3734 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
HOXC4P09017 SMG1P7-201ENST00000565246 2704 ntBASIC4.96□□□□□ -1.62
HOXC4P09017 AC092376.2-201ENST00000622621 4116 ntBASIC4.96□□□□□ -1.62
HOXC4P09017 SRRM1-202ENST00000374389 3110 ntAPPRIS ALT2 TSL 5 BASIC4.96□□□□□ -1.62
HOXC4P09017 ADCY10-201ENST00000367848 5055 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
HOXC4P09017 PEX5L-202ENST00000392649 8540 ntAPPRIS ALT2 TSL 5 BASIC4.96□□□□□ -1.62
HOXC4P09017 SMG1P3-204ENST00000520823 3194 ntTSL 5 BASIC4.96□□□□□ -1.62
HOXC4P09017 RBMX-203ENST00000431446 2004 ntTSL 2 BASIC4.96□□□□□ -1.62
HOXC4P09017 NPM1-203ENST00000393820 1598 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
HOXC4P09017 AL023755.1-201ENST00000441851 1801 ntTSL 2 BASIC4.95□□□□□ -1.62
HOXC4P09017 LINC01541-202ENST00000568095 3105 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
HOXC4P09017 PTPRD-213ENST00000537002 8224 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
HOXC4P09017 EIF3M-208ENST00000531120 5051 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
HOXC4P09017 IL13RA2-201ENST00000243213 1371 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 86.6 ms