Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 LINC01232-203ENST00000625369 576 ntTSL 4 BASIC5.34□□□□□ -1.55
APOEP02649 LINC01739-205ENST00000641890 573 ntBASIC5.34□□□□□ -1.55
APOEP02649 PLCH1-201ENST00000334686 6128 ntAPPRIS P3 TSL 1 (best) BASIC5.34□□□□□ -1.55
APOEP02649 NBPF9-208ENST00000621074 4302 ntTSL 5 BASIC5.34□□□□□ -1.55
APOEP02649 SPART-202ENST00000438666 4789 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
APOEP02649 CNKSR2-202ENST00000379510 5315 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.56
APOEP02649 GYS2-201ENST00000261195 3132 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.56
APOEP02649 SLC10A7-202ENST00000394059 1730 ntTSL 1 (best) BASIC5.34□□□□□ -1.56
APOEP02649 RC3H1-202ENST00000367694 3775 ntAPPRIS ALT1 TSL 2 BASIC5.34□□□□□ -1.56
APOEP02649 HDAC9-204ENST00000406451 9705 ntAPPRIS ALT1 TSL 1 (best) BASIC5.34□□□□□ -1.56
APOEP02649 GOLPH3L-201ENST00000271732 2999 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.56
APOEP02649 FMN1-202ENST00000334528 12355 ntAPPRIS P3 TSL 1 (best) BASIC5.33□□□□□ -1.56
APOEP02649 FYB1-201ENST00000351578 4750 ntAPPRIS P3 TSL 1 (best) BASIC5.33□□□□□ -1.56
APOEP02649 HSPA8P18-201ENST00000439846 1928 ntBASIC5.33□□□□□ -1.56
APOEP02649 IRAK4-203ENST00000448290 1381 ntTSL 5 BASIC5.33□□□□□ -1.56
APOEP02649 PROM1-220ENST00000540805 3908 ntAPPRIS ALT2 TSL 5 BASIC5.33□□□□□ -1.56
APOEP02649 AC021074.3-201ENST00000476385 1825 ntTSL 2 BASIC5.33□□□□□ -1.56
APOEP02649 SNURFL-201ENST00000309296 343 ntBASIC5.33□□□□□ -1.56
APOEP02649 LINC01620-202ENST00000372910 649 ntTSL 5 BASIC5.33□□□□□ -1.56
APOEP02649 OR51B4-201ENST00000380224 933 ntAPPRIS P1 BASIC5.33□□□□□ -1.56
APOEP02649 AL390316.1-201ENST00000406279 553 ntBASIC5.33□□□□□ -1.56
APOEP02649 RNU6ATAC7P-201ENST00000408111 127 ntBASIC5.33□□□□□ -1.56
APOEP02649 RN7SKP114-201ENST00000410327 279 ntBASIC5.33□□□□□ -1.56
APOEP02649 XIST-201ENST00000416330 750 ntTSL 2 BASIC5.33□□□□□ -1.56
APOEP02649 AL591468.1-201ENST00000417932 573 ntTSL 3 BASIC5.33□□□□□ -1.56
APOEP02649 NPM1P33-201ENST00000438918 872 ntBASIC5.33□□□□□ -1.56
APOEP02649 PARGP1-202ENST00000440803 790 ntTSL 2 BASIC5.33□□□□□ -1.56
APOEP02649 CEACAMP7-201ENST00000444105 496 ntBASIC5.33□□□□□ -1.56
APOEP02649 AC092637.1-201ENST00000444745 510 ntTSL 5 BASIC5.33□□□□□ -1.56
APOEP02649 AC073850.1-201ENST00000449243 255 ntBASIC5.33□□□□□ -1.56
APOEP02649 RN7SL443P-201ENST00000464331 290 ntBASIC5.33□□□□□ -1.56
APOEP02649 AC092957.1-201ENST00000473299 570 ntTSL 4 BASIC5.33□□□□□ -1.56
APOEP02649 AC090114.3-201ENST00000479267 829 ntBASIC5.33□□□□□ -1.56
APOEP02649 NPM1P29-201ENST00000483112 803 ntBASIC5.33□□□□□ -1.56
APOEP02649 AC000372.1-201ENST00000488818 646 ntTSL 2 BASIC5.33□□□□□ -1.56
APOEP02649 LINC02499-201ENST00000502291 763 ntTSL 3 BASIC5.33□□□□□ -1.56
APOEP02649 AL133372.2-203ENST00000508469 922 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
APOEP02649 AC013701.1-201ENST00000522657 465 ntBASIC5.33□□□□□ -1.56
APOEP02649 AP000859.1-201ENST00000525536 307 ntBASIC5.33□□□□□ -1.56
APOEP02649 AP001970.1-201ENST00000531681 701 ntTSL 3 BASIC5.33□□□□□ -1.56
APOEP02649 TWF1-207ENST00000548315 1170 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
APOEP02649 VPS29-210ENST00000552130 1057 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
APOEP02649 AC051619.2-201ENST00000559063 397 ntBASIC5.33□□□□□ -1.56
APOEP02649 CCL14-204ENST00000622526 472 ntTSL 3 BASIC5.33□□□□□ -1.56
APOEP02649 AC015660.5-201ENST00000623238 564 ntBASIC5.33□□□□□ -1.56
APOEP02649 LINC01338-201ENST00000627179 632 ntTSL 3 BASIC5.33□□□□□ -1.56
APOEP02649 AP000808.1-201ENST00000512200 3252 ntTSL 2 BASIC5.33□□□□□ -1.56
APOEP02649 ING3-205ENST00000445699 1723 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
APOEP02649 TET2-202ENST00000305737 9233 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
APOEP02649 EIF4EBP2-201ENST00000373218 7257 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
APOEP02649 OPRM1-215ENST00000520708 1519 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
APOEP02649 TBC1D23-201ENST00000344949 3656 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
APOEP02649 RNF111-212ENST00000561186 4536 ntTSL 2 BASIC5.33□□□□□ -1.56
APOEP02649 OBSCN-210ENST00000570156 26925 ntAPPRIS P1 TSL 5 BASIC5.33□□□□□ -1.56
APOEP02649 ATP8B4-211ENST00000559829 4894 ntAPPRIS P1 TSL 5 BASIC5.32□□□□□ -1.56
APOEP02649 FOXP2-204ENST00000390668 1472 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
APOEP02649 THAP12P4-201ENST00000528321 2266 ntBASIC5.32□□□□□ -1.56
APOEP02649 NCOA3-201ENST00000371997 6750 ntAPPRIS ALT2 TSL 1 (best) BASIC5.32□□□□□ -1.56
APOEP02649 FGF12-204ENST00000445105 5406 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
APOEP02649 GLCE-201ENST00000261858 5037 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
APOEP02649 STAG2-205ENST00000371160 6045 ntAPPRIS P3 TSL 1 (best) BASIC5.32□□□□□ -1.56
APOEP02649 RNA5SP305-201ENST00000362665 119 ntBASIC5.32□□□□□ -1.56
APOEP02649 SNORA74A-201ENST00000364089 198 ntBASIC5.32□□□□□ -1.56
APOEP02649 MRRF-207ENST00000373729 870 ntTSL 3 BASIC5.32□□□□□ -1.56
APOEP02649 LINC02528-201ENST00000417800 381 ntTSL 2 BASIC5.32□□□□□ -1.56
APOEP02649 FSIP2-AS1-201ENST00000429929 440 ntTSL 3 BASIC5.32□□□□□ -1.56
APOEP02649 AC009238.2-201ENST00000431026 355 ntBASIC5.32□□□□□ -1.56
APOEP02649 FSIP2-AS1-202ENST00000436557 689 ntTSL 3 BASIC5.32□□□□□ -1.56
APOEP02649 CYCSP24-201ENST00000445119 316 ntBASIC5.32□□□□□ -1.56
APOEP02649 AL731574.1-201ENST00000447757 456 ntTSL 5 BASIC5.32□□□□□ -1.56
APOEP02649 NDUFA5P8-201ENST00000449019 346 ntBASIC5.32□□□□□ -1.56
APOEP02649 TPT1P1-201ENST00000458495 518 ntBASIC5.32□□□□□ -1.56
APOEP02649 RN7SL515P-201ENST00000463999 297 ntBASIC5.32□□□□□ -1.56
APOEP02649 RPL7AP6-201ENST00000477943 801 ntBASIC5.32□□□□□ -1.56
APOEP02649 MORC1-AS1-201ENST00000480826 564 ntTSL 2 BASIC5.32□□□□□ -1.56
APOEP02649 AC016746.1-201ENST00000489557 831 ntTSL 2 BASIC5.32□□□□□ -1.56
APOEP02649 AC112206.2-204ENST00000504068 793 ntTSL 3 BASIC5.32□□□□□ -1.56
APOEP02649 AC024132.2-201ENST00000506878 482 ntTSL 3 BASIC5.32□□□□□ -1.56
APOEP02649 AC004052.1-201ENST00000514327 567 ntTSL 4 BASIC5.32□□□□□ -1.56
APOEP02649 AC087763.1-201ENST00000603391 286 ntBASIC5.32□□□□□ -1.56
APOEP02649 AC037198.3-201ENST00000616754 526 ntBASIC5.32□□□□□ -1.56
APOEP02649 AP002799.1-201ENST00000623552 423 ntBASIC5.32□□□□□ -1.56
APOEP02649 LEUTX-202ENST00000638280 667 ntAPPRIS P1 TSL 3 BASIC5.32□□□□□ -1.56
APOEP02649 SMC2-203ENST00000374793 5909 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
APOEP02649 RBMS3-205ENST00000434693 8540 ntTSL 5 BASIC5.32□□□□□ -1.56
APOEP02649 LINC02302-201ENST00000556405 2904 ntTSL 2 BASIC5.32□□□□□ -1.56
APOEP02649 EIF2AK2-201ENST00000233057 10042 ntAPPRIS P1 TSL 2 BASIC5.32□□□□□ -1.56
APOEP02649 ANXA1-201ENST00000257497 1509 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
APOEP02649 AC083843.3-201ENST00000623679 2186 ntBASIC5.32□□□□□ -1.56
APOEP02649 NXF4-202ENST00000416098 1465 ntBASIC5.32□□□□□ -1.56
APOEP02649 AC090518.1-201ENST00000562300 1495 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
APOEP02649 DLX6-AS1-201ENST00000430027 15364 ntTSL 2 BASIC5.31□□□□□ -1.56
APOEP02649 BX088651.2-201ENST00000425493 3614 ntTSL 2 BASIC5.31□□□□□ -1.56
APOEP02649 EEF1A1P36-201ENST00000427807 1351 ntBASIC5.31□□□□□ -1.56
APOEP02649 CASC19-221ENST00000641309 1382 ntBASIC5.31□□□□□ -1.56
APOEP02649 DNAH6-202ENST00000389394 12795 ntAPPRIS P1 TSL 5 BASIC5.31□□□□□ -1.56
APOEP02649 HEATR5A-203ENST00000543095 7840 ntAPPRIS P1 TSL 5 BASIC5.31□□□□□ -1.56
APOEP02649 GLYAT-201ENST00000278400 1150 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
APOEP02649 HMMR-202ENST00000358715 2988 ntAPPRIS P4 TSL 1 (best) BASIC5.31□□□□□ -1.56
APOEP02649 AL353625.1-202ENST00000366273 571 ntBASIC5.31□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 140.4 ms