Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 LINC01109-201ENST00000603837 3081 ntBASIC3.84□□□□□ -1.79
HLA-DQA1P01909 C12orf45-204ENST00000552951 23529 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
HLA-DQA1P01909 AC004803.1-201ENST00000503602 3207 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
HLA-DQA1P01909 CYLD-207ENST00000564326 3259 ntAPPRIS P1 TSL 5 BASIC3.84□□□□□ -1.79
HLA-DQA1P01909 PIGN-242ENST00000640145 4505 ntAPPRIS P1 TSL 5 BASIC3.84□□□□□ -1.8
HLA-DQA1P01909 AC091046.3-201ENST00000631455 1574 ntBASIC3.84□□□□□ -1.8
HLA-DQA1P01909 KLRD1-204ENST00000381908 15549 ntAPPRIS P4 TSL 1 (best) BASIC3.84□□□□□ -1.8
HLA-DQA1P01909 AC005332.5-201ENST00000591222 2919 ntBASIC3.84□□□□□ -1.8
HLA-DQA1P01909 CYLD-212ENST00000568704 3292 ntTSL 5 BASIC3.83□□□□□ -1.8
HLA-DQA1P01909 PARP11-201ENST00000228820 4424 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
HLA-DQA1P01909 PARP11-203ENST00000427057 4406 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
HLA-DQA1P01909 APC-207ENST00000508376 10619 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
HLA-DQA1P01909 AL672167.1-205ENST00000641112 3080 ntBASIC3.83□□□□□ -1.8
HLA-DQA1P01909 MARCH1-201ENST00000274056 5367 ntAPPRIS P1 TSL 4 BASIC3.83□□□□□ -1.8
HLA-DQA1P01909 RN7SKP275-201ENST00000364626 301 ntBASIC3.83□□□□□ -1.8
HLA-DQA1P01909 RN7SKP6-201ENST00000364795 319 ntBASIC3.83□□□□□ -1.8
HLA-DQA1P01909 SAR1A-201ENST00000373236 437 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
HLA-DQA1P01909 ZCCHC6-203ENST00000375948 958 ntTSL 2 BASIC3.83□□□□□ -1.8
HLA-DQA1P01909 RNU1-74P-201ENST00000384108 171 ntBASIC3.83□□□□□ -1.8
HLA-DQA1P01909 RPS24P12-201ENST00000402084 394 ntBASIC3.83□□□□□ -1.8
HLA-DQA1P01909 AL096711.1-201ENST00000404780 554 ntBASIC3.83□□□□□ -1.8
HLA-DQA1P01909 HDGFP1-201ENST00000405943 252 ntBASIC3.83□□□□□ -1.8
HLA-DQA1P01909 MIR1203-201ENST00000408812 85 ntBASIC3.83□□□□□ -1.8
HLA-DQA1P01909 HMGN1P20-201ENST00000411849 300 ntBASIC3.83□□□□□ -1.8
HLA-DQA1P01909 AC245060.4-201ENST00000413293 1121 ntBASIC3.83□□□□□ -1.8
HLA-DQA1P01909 RAB9AP4-201ENST00000415230 609 ntBASIC3.83□□□□□ -1.8
HLA-DQA1P01909 AC009502.1-203ENST00000416861 496 ntTSL 2 BASIC3.83□□□□□ -1.8
HLA-DQA1P01909 AL590006.1-201ENST00000417390 752 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
HLA-DQA1P01909 AC004690.1-201ENST00000418216 328 ntBASIC3.83□□□□□ -1.8
HLA-DQA1P01909 OR2X1P-201ENST00000421144 687 ntBASIC3.83□□□□□ -1.8
HLA-DQA1P01909 AL356476.1-201ENST00000421481 480 ntTSL 5 BASIC3.83□□□□□ -1.8
HLA-DQA1P01909 AL035660.1-201ENST00000422041 222 ntBASIC3.83□□□□□ -1.8
HLA-DQA1P01909 EIF4EP1-201ENST00000422311 642 ntBASIC3.83□□□□□ -1.8
HLA-DQA1P01909 AC004448.2-201ENST00000422360 586 ntBASIC3.83□□□□□ -1.8
HLA-DQA1P01909 FABP7P1-201ENST00000424004 391 ntBASIC3.83□□□□□ -1.8
HLA-DQA1P01909 MTCO1P51-201ENST00000427672 1060 ntBASIC3.83□□□□□ -1.8
HLA-DQA1P01909 AL022331.1-201ENST00000429025 477 ntBASIC3.83□□□□□ -1.8
HLA-DQA1P01909 AC009227.2-201ENST00000432599 511 ntTSL 3 BASIC3.83□□□□□ -1.8
HLA-DQA1P01909 DNAJA1P5-201ENST00000440278 943 ntBASIC3.83□□□□□ -1.8
HLA-DQA1P01909 AL137076.1-201ENST00000441046 551 ntTSL 2 BASIC3.83□□□□□ -1.8
HLA-DQA1P01909 HMGN1P2-201ENST00000445197 310 ntBASIC3.83□□□□□ -1.8
HLA-DQA1P01909 AC004980.3-201ENST00000447046 365 ntBASIC3.83□□□□□ -1.8
HLA-DQA1P01909 NDUFB2-213ENST00000476470 482 ntTSL 5 BASIC3.83□□□□□ -1.8
HLA-DQA1P01909 NADK2-AS1-201ENST00000501794 720 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
HLA-DQA1P01909 AC098859.2-201ENST00000506232 563 ntTSL 4 BASIC3.83□□□□□ -1.8
HLA-DQA1P01909 AC006427.1-201ENST00000514359 712 ntBASIC3.83□□□□□ -1.8
HLA-DQA1P01909 RNA5SP360-201ENST00000516555 118 ntBASIC3.83□□□□□ -1.8
HLA-DQA1P01909 AC005868.1-201ENST00000536421 331 ntBASIC3.83□□□□□ -1.8
HLA-DQA1P01909 AC006206.2-202ENST00000537714 648 ntTSL 5 BASIC3.83□□□□□ -1.8
HLA-DQA1P01909 AC008250.1-201ENST00000539874 522 ntTSL 3 BASIC3.83□□□□□ -1.8
HLA-DQA1P01909 CPSF7-220ENST00000541963 549 ntTSL 4 BASIC3.83□□□□□ -1.8
HLA-DQA1P01909 AC011595.3-201ENST00000546699 632 ntTSL 3 BASIC3.83□□□□□ -1.8
HLA-DQA1P01909 AL356801.1-201ENST00000559320 294 ntBASIC3.83□□□□□ -1.8
HLA-DQA1P01909 NDUFB4P11-201ENST00000560510 395 ntBASIC3.83□□□□□ -1.8
HLA-DQA1P01909 AL031600.2-201ENST00000563223 307 ntTSL 5 BASIC3.83□□□□□ -1.8
HLA-DQA1P01909 AC005670.2-201ENST00000571841 889 ntAPPRIS P1 TSL 5 BASIC3.83□□□□□ -1.8
HLA-DQA1P01909 LINC00511-212ENST00000581183 657 ntTSL 3 BASIC3.83□□□□□ -1.8
HLA-DQA1P01909 AC134669.1-201ENST00000581275 672 ntBASIC3.83□□□□□ -1.8
HLA-DQA1P01909 AC024563.1-201ENST00000601860 618 ntTSL 2 BASIC3.83□□□□□ -1.8
HLA-DQA1P01909 MIR6778-201ENST00000617912 73 ntBASIC3.83□□□□□ -1.8
HLA-DQA1P01909 PXT1-202ENST00000619547 619 ntAPPRIS ALT2 TSL 1 (best) BASIC3.83□□□□□ -1.8
HLA-DQA1P01909 AC074140.1-201ENST00000621617 208 ntBASIC3.83□□□□□ -1.8
HLA-DQA1P01909 AC068631.1-223ENST00000625877 472 ntTSL 5 BASIC3.83□□□□□ -1.8
HLA-DQA1P01909 AC055839.1-201ENST00000634467 498 ntBASIC3.83□□□□□ -1.8
HLA-DQA1P01909 5S_rRNA.28-201ENST00000638107 119 ntBASIC3.83□□□□□ -1.8
HLA-DQA1P01909 BTG4-203ENST00000525791 1394 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
HLA-DQA1P01909 OFD1P9Y-201ENST00000417699 1491 ntBASIC3.83□□□□□ -1.8
HLA-DQA1P01909 WDFY3-201ENST00000295888 14247 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
HLA-DQA1P01909 TPTE2-205ENST00000400230 1793 ntAPPRIS P1 TSL 5 BASIC3.83□□□□□ -1.8
HLA-DQA1P01909 VPS13C-201ENST00000249837 13300 ntAPPRIS P3 TSL 1 (best) BASIC3.83□□□□□ -1.8
HLA-DQA1P01909 AL355306.2-206ENST00000635233 1903 ntTSL 5 BASIC3.83□□□□□ -1.8
HLA-DQA1P01909 ZNF534-204ENST00000433050 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC3.83□□□□□ -1.8
HLA-DQA1P01909 STAU2-220ENST00000522695 2646 ntAPPRIS ALT1 TSL 1 (best) BASIC3.83□□□□□ -1.8
HLA-DQA1P01909 ABCB5-201ENST00000258738 2906 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
HLA-DQA1P01909 STON1-GTF2A1L-201ENST00000394751 3534 ntTSL 2 BASIC3.83□□□□□ -1.8
HLA-DQA1P01909 SCAI-201ENST00000336505 12079 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
HLA-DQA1P01909 ABI3BP-206ENST00000471714 6783 ntAPPRIS ALT2 TSL 5 BASIC3.83□□□□□ -1.8
HLA-DQA1P01909 OTOGL-202ENST00000458043 8083 ntAPPRIS P5 TSL 5 BASIC3.82□□□□□ -1.8
HLA-DQA1P01909 CYP19A1-201ENST00000396402 4417 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
HLA-DQA1P01909 CASC19-204ENST00000641001 2055 ntBASIC3.82□□□□□ -1.8
HLA-DQA1P01909 QSER1-201ENST00000399302 9335 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
HLA-DQA1P01909 PCDH11X-205ENST00000373094 9179 ntAPPRIS P4 TSL 1 (best) BASIC3.82□□□□□ -1.8
HLA-DQA1P01909 ARPP21-202ENST00000396481 1304 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
HLA-DQA1P01909 DDX18P5-201ENST00000534547 1306 ntBASIC3.82□□□□□ -1.8
HLA-DQA1P01909 CLEC7A-202ENST00000304084 1130 ntAPPRIS ALT1 TSL 1 (best) BASIC3.82□□□□□ -1.8
HLA-DQA1P01909 SNORA64.1-201ENST00000362600 132 ntBASIC3.82□□□□□ -1.8
HLA-DQA1P01909 RNA5SP500-201ENST00000364486 119 ntBASIC3.82□□□□□ -1.8
HLA-DQA1P01909 RNA5SP510-201ENST00000364697 99 ntBASIC3.82□□□□□ -1.8
HLA-DQA1P01909 AL353625.1-202ENST00000366273 571 ntBASIC3.82□□□□□ -1.8
HLA-DQA1P01909 TRAV16-201ENST00000390444 329 ntAPPRIS P1 BASIC3.82□□□□□ -1.8
HLA-DQA1P01909 AL121834.1-202ENST00000404494 277 ntBASIC3.82□□□□□ -1.8
HLA-DQA1P01909 LSM5-203ENST00000409782 649 ntTSL 5 BASIC3.82□□□□□ -1.8
HLA-DQA1P01909 AF240627.1-201ENST00000416002 879 ntTSL 3 BASIC3.82□□□□□ -1.8
HLA-DQA1P01909 Z93019.1-201ENST00000416450 973 ntBASIC3.82□□□□□ -1.8
HLA-DQA1P01909 AC234781.4-201ENST00000419384 244 ntBASIC3.82□□□□□ -1.8
HLA-DQA1P01909 IPPKP1-201ENST00000422501 768 ntBASIC3.82□□□□□ -1.8
HLA-DQA1P01909 PDSS1P1-201ENST00000422953 1114 ntBASIC3.82□□□□□ -1.8
HLA-DQA1P01909 RPS27P18-201ENST00000431701 247 ntBASIC3.82□□□□□ -1.8
HLA-DQA1P01909 CLUHP1-201ENST00000435012 1190 ntBASIC3.82□□□□□ -1.8
HLA-DQA1P01909 AL139280.1-201ENST00000436340 463 ntTSL 3 BASIC3.82□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 90.1 ms