Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
COL3A1P02461 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC25.96■■□□□ 1.75
COL3A1P02461 GLRB-205ENST00000512619 728 ntTSL 3 BASIC25.96■■□□□ 1.75
COL3A1P02461 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC25.96■■□□□ 1.75
COL3A1P02461 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC25.96■■□□□ 1.75
COL3A1P02461 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC25.96■■□□□ 1.75
COL3A1P02461 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC25.96■■□□□ 1.75
COL3A1P02461 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC25.96■■□□□ 1.75
COL3A1P02461 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.75
COL3A1P02461 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC25.95■■□□□ 1.75
COL3A1P02461 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC25.95■■□□□ 1.74
COL3A1P02461 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC25.95■■□□□ 1.74
COL3A1P02461 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC25.95■■□□□ 1.74
COL3A1P02461 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC25.95■■□□□ 1.74
COL3A1P02461 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.74
COL3A1P02461 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC25.95■■□□□ 1.74
COL3A1P02461 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC25.95■■□□□ 1.74
COL3A1P02461 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC25.95■■□□□ 1.74
COL3A1P02461 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.74
COL3A1P02461 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC25.95■■□□□ 1.74
COL3A1P02461 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.74
COL3A1P02461 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.74
COL3A1P02461 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC25.94■■□□□ 1.74
COL3A1P02461 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC25.94■■□□□ 1.74
COL3A1P02461 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.74
COL3A1P02461 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC25.94■■□□□ 1.74
COL3A1P02461 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.74
COL3A1P02461 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC25.94■■□□□ 1.74
COL3A1P02461 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC25.94■■□□□ 1.74
COL3A1P02461 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC25.94■■□□□ 1.74
COL3A1P02461 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.74
COL3A1P02461 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC25.94■■□□□ 1.74
COL3A1P02461 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC25.94■■□□□ 1.74
COL3A1P02461 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC25.94■■□□□ 1.74
COL3A1P02461 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC25.93■■□□□ 1.74
COL3A1P02461 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC25.93■■□□□ 1.74
COL3A1P02461 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC25.93■■□□□ 1.74
COL3A1P02461 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
COL3A1P02461 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC25.93■■□□□ 1.74
COL3A1P02461 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
COL3A1P02461 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC25.93■■□□□ 1.74
COL3A1P02461 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC25.93■■□□□ 1.74
COL3A1P02461 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC25.93■■□□□ 1.74
COL3A1P02461 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
COL3A1P02461 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC25.92■■□□□ 1.74
COL3A1P02461 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
COL3A1P02461 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC25.92■■□□□ 1.74
COL3A1P02461 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC25.92■■□□□ 1.74
COL3A1P02461 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC25.92■■□□□ 1.74
COL3A1P02461 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC25.92■■□□□ 1.74
COL3A1P02461 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC25.92■■□□□ 1.74
COL3A1P02461 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC25.92■■□□□ 1.74
COL3A1P02461 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC25.92■■□□□ 1.74
COL3A1P02461 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC25.92■■□□□ 1.74
COL3A1P02461 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC25.92■■□□□ 1.74
COL3A1P02461 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC25.92■■□□□ 1.74
COL3A1P02461 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC25.91■■□□□ 1.74
COL3A1P02461 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC25.91■■□□□ 1.74
COL3A1P02461 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC25.91■■□□□ 1.74
COL3A1P02461 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC25.91■■□□□ 1.74
COL3A1P02461 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC25.91■■□□□ 1.74
COL3A1P02461 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC25.91■■□□□ 1.74
COL3A1P02461 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC25.91■■□□□ 1.74
COL3A1P02461 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC25.91■■□□□ 1.74
COL3A1P02461 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC25.91■■□□□ 1.74
COL3A1P02461 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
COL3A1P02461 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
COL3A1P02461 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC25.91■■□□□ 1.74
COL3A1P02461 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
COL3A1P02461 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC25.91■■□□□ 1.74
COL3A1P02461 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
COL3A1P02461 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC25.91■■□□□ 1.74
COL3A1P02461 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
COL3A1P02461 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
COL3A1P02461 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC25.91■■□□□ 1.74
COL3A1P02461 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC25.91■■□□□ 1.74
COL3A1P02461 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC25.91■■□□□ 1.74
COL3A1P02461 FITM1-202ENST00000559294 800 ntBASIC25.91■■□□□ 1.74
COL3A1P02461 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC25.91■■□□□ 1.74
COL3A1P02461 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC25.91■■□□□ 1.74
COL3A1P02461 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC25.91■■□□□ 1.74
COL3A1P02461 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC25.91■■□□□ 1.74
COL3A1P02461 AC096733.2-201ENST00000609937 1394 ntBASIC25.91■■□□□ 1.74
COL3A1P02461 FSCN1P1-201ENST00000568912 1481 ntBASIC25.91■■□□□ 1.74
COL3A1P02461 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC25.91■■□□□ 1.74
COL3A1P02461 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC25.9■■□□□ 1.74
COL3A1P02461 AC104417.2-201ENST00000562989 1793 ntBASIC25.9■■□□□ 1.74
COL3A1P02461 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC25.9■■□□□ 1.74
COL3A1P02461 ME2-218ENST00000640965 2476 ntTSL 5 BASIC25.9■■□□□ 1.74
COL3A1P02461 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC25.9■■□□□ 1.74
COL3A1P02461 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
COL3A1P02461 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
COL3A1P02461 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC25.9■■□□□ 1.74
COL3A1P02461 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC25.9■■□□□ 1.74
COL3A1P02461 UNC93B2-201ENST00000285383 730 ntBASIC25.9■■□□□ 1.74
COL3A1P02461 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC25.9■■□□□ 1.74
COL3A1P02461 AC091390.4-202ENST00000476426 537 ntBASIC25.9■■□□□ 1.74
COL3A1P02461 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC25.9■■□□□ 1.74
COL3A1P02461 AL160286.2-201ENST00000567150 934 ntBASIC25.9■■□□□ 1.74
COL3A1P02461 AP005242.2-201ENST00000580065 1175 ntBASIC25.9■■□□□ 1.74
Retrieved 100 of 98,524 protein–RNA pairs in 36.2 ms