Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 USP29-201ENST00000254181 3705 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
SHANK3Q9BYB0 F9-201ENST00000218099 2780 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
SHANK3Q9BYB0 MRPL50-201ENST00000374865 3332 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
SHANK3Q9BYB0 TTC39B-208ENST00000512701 10483 ntAPPRIS P3 TSL 2 BASIC6.36□□□□□ -1.39
SHANK3Q9BYB0 CXorf65-201ENST00000374251 601 ntAPPRIS P1 TSL 5 BASIC6.36□□□□□ -1.39
SHANK3Q9BYB0 CEACAMP8-201ENST00000413902 580 ntBASIC6.36□□□□□ -1.39
SHANK3Q9BYB0 MTND4LP17-201ENST00000414607 293 ntBASIC6.36□□□□□ -1.39
SHANK3Q9BYB0 LINC01341-201ENST00000419361 552 ntTSL 2 BASIC6.36□□□□□ -1.39
SHANK3Q9BYB0 GAS5-208ENST00000425771 242 ntTSL 3 BASIC6.36□□□□□ -1.39
SHANK3Q9BYB0 AC023141.6-201ENST00000429418 337 ntBASIC6.36□□□□□ -1.39
SHANK3Q9BYB0 AC009238.2-201ENST00000431026 355 ntBASIC6.36□□□□□ -1.39
SHANK3Q9BYB0 FO393401.1-201ENST00000453914 600 ntTSL 3 BASIC6.36□□□□□ -1.39
SHANK3Q9BYB0 AC022133.1-201ENST00000490961 571 ntBASIC6.36□□□□□ -1.39
SHANK3Q9BYB0 AL136537.1-202ENST00000501725 430 ntTSL 3 BASIC6.36□□□□□ -1.39
SHANK3Q9BYB0 LINC01486-201ENST00000538041 716 ntTSL 2 BASIC6.36□□□□□ -1.39
SHANK3Q9BYB0 DAZAP2-209ENST00000549732 601 ntTSL 2 BASIC6.36□□□□□ -1.39
SHANK3Q9BYB0 AC022884.2-201ENST00000578535 580 ntBASIC6.36□□□□□ -1.39
SHANK3Q9BYB0 AL024498.1-201ENST00000606522 1100 ntTSL 3 BASIC6.36□□□□□ -1.39
SHANK3Q9BYB0 EYA4-202ENST00000355286 4317 ntAPPRIS ALT1 TSL 1 (best) BASIC6.36□□□□□ -1.39
SHANK3Q9BYB0 N4BP2-201ENST00000261435 9744 ntAPPRIS P1 TSL 5 BASIC6.36□□□□□ -1.39
SHANK3Q9BYB0 CUL3-216ENST00000617432 1426 ntTSL 5 BASIC6.36□□□□□ -1.39
SHANK3Q9BYB0 FOXP2-209ENST00000393498 2617 ntTSL 5 BASIC6.35□□□□□ -1.39
SHANK3Q9BYB0 BTLA-201ENST00000334529 3213 ntAPPRIS P3 TSL 1 (best) BASIC6.35□□□□□ -1.39
SHANK3Q9BYB0 HEATR1-202ENST00000366581 6538 ntTSL 5 BASIC6.35□□□□□ -1.39
SHANK3Q9BYB0 DDX3Y-201ENST00000336079 4445 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
SHANK3Q9BYB0 OR2H1-201ENST00000377132 2253 ntAPPRIS P1 BASIC6.35□□□□□ -1.39
SHANK3Q9BYB0 LINC01847-202ENST00000523311 1762 ntTSL 5 BASIC6.35□□□□□ -1.39
SHANK3Q9BYB0 MIR670-201ENST00000390142 98 ntBASIC6.35□□□□□ -1.39
SHANK3Q9BYB0 RNU1-82P-201ENST00000390851 165 ntBASIC6.35□□□□□ -1.39
SHANK3Q9BYB0 AL357515.1-201ENST00000402967 542 ntBASIC6.35□□□□□ -1.39
SHANK3Q9BYB0 SLC8A1-AS1-201ENST00000413479 800 ntTSL 5 BASIC6.35□□□□□ -1.39
SHANK3Q9BYB0 LINC01206-203ENST00000476815 482 ntTSL 3 BASIC6.35□□□□□ -1.39
SHANK3Q9BYB0 AC087379.1-201ENST00000524613 993 ntTSL 5 BASIC6.35□□□□□ -1.39
SHANK3Q9BYB0 ALOX12P2-208ENST00000574183 519 ntTSL 3 BASIC6.35□□□□□ -1.39
SHANK3Q9BYB0 AP005121.1-202ENST00000584414 555 ntTSL 2 BASIC6.35□□□□□ -1.39
SHANK3Q9BYB0 UBE2NL-201ENST00000618570 1185 ntAPPRIS P1 BASIC6.35□□□□□ -1.39
SHANK3Q9BYB0 ZNF714-202ENST00000456283 6812 ntAPPRIS P1 TSL 2 BASIC6.35□□□□□ -1.39
SHANK3Q9BYB0 SRRM1-202ENST00000374389 3110 ntAPPRIS ALT2 TSL 5 BASIC6.35□□□□□ -1.39
SHANK3Q9BYB0 ZNF442-205ENST00000545749 1884 ntAPPRIS P1 TSL 5 BASIC6.35□□□□□ -1.39
SHANK3Q9BYB0 FAM227A-205ENST00000535113 10322 ntAPPRIS ALT2 TSL 5 BASIC6.35□□□□□ -1.39
SHANK3Q9BYB0 RAPGEF4-215ENST00000540783 3974 ntTSL 2 BASIC6.35□□□□□ -1.39
SHANK3Q9BYB0 VANGL1-202ENST00000355485 8691 ntAPPRIS P3 TSL 1 (best) BASIC6.35□□□□□ -1.39
SHANK3Q9BYB0 AC009779.8-201ENST00000641684 4384 ntBASIC6.35□□□□□ -1.39
SHANK3Q9BYB0 SPTA1-201ENST00000368147 7999 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
SHANK3Q9BYB0 SCIN-201ENST00000297029 9713 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
SHANK3Q9BYB0 IQGAP2-204ENST00000502745 3404 ntTSL 2 BASIC6.34□□□□□ -1.39
SHANK3Q9BYB0 PAK3-203ENST00000372007 8940 ntAPPRIS P3 TSL 1 (best) BASIC6.34□□□□□ -1.39
SHANK3Q9BYB0 FAM72A-201ENST00000341209 1774 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
SHANK3Q9BYB0 LINC01268-201ENST00000434296 2755 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
SHANK3Q9BYB0 GSTCD-202ENST00000394728 2416 ntAPPRIS P1 TSL 5 BASIC6.34□□□□□ -1.39
SHANK3Q9BYB0 AC009643.2-201ENST00000603543 1448 ntBASIC6.34□□□□□ -1.39
SHANK3Q9BYB0 RGS5-212ENST00000618415 5812 ntTSL 4 BASIC6.34□□□□□ -1.39
SHANK3Q9BYB0 CYCSP10-201ENST00000417973 294 ntBASIC6.34□□□□□ -1.39
SHANK3Q9BYB0 H3F3BP1-201ENST00000440551 403 ntBASIC6.34□□□□□ -1.39
SHANK3Q9BYB0 AL353748.1-201ENST00000440753 474 ntBASIC6.34□□□□□ -1.39
SHANK3Q9BYB0 AC008957.1-201ENST00000510740 478 ntTSL 3 BASIC6.34□□□□□ -1.39
SHANK3Q9BYB0 AC021193.1-201ENST00000511607 420 ntBASIC6.34□□□□□ -1.39
SHANK3Q9BYB0 MIR100HG-221ENST00000534297 572 ntTSL 4 BASIC6.34□□□□□ -1.39
SHANK3Q9BYB0 NUDT7-203ENST00000563839 316 ntTSL 3 BASIC6.34□□□□□ -1.39
SHANK3Q9BYB0 AP001269.1-201ENST00000592820 528 ntTSL 4 BASIC6.34□□□□□ -1.39
SHANK3Q9BYB0 FAM27B-201ENST00000610601 213 ntBASIC6.34□□□□□ -1.39
SHANK3Q9BYB0 FP236315.3-201ENST00000623587 307 ntTSL 2 BASIC6.34□□□□□ -1.39
SHANK3Q9BYB0 ABL2-201ENST00000344730 6910 ntAPPRIS ALT2 TSL 1 (best) BASIC6.34□□□□□ -1.39
SHANK3Q9BYB0 AC073365.1-203ENST00000641055 1992 ntBASIC6.34□□□□□ -1.39
SHANK3Q9BYB0 PCDH11Y-204ENST00000400457 9039 ntAPPRIS P5 TSL 1 (best) BASIC6.34□□□□□ -1.39
SHANK3Q9BYB0 ZNF836-204ENST00000597252 3209 ntAPPRIS P2 TSL 2 BASIC6.34□□□□□ -1.39
SHANK3Q9BYB0 MID1-202ENST00000380779 6044 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
SHANK3Q9BYB0 ITGAV-204ENST00000433736 3288 ntAPPRIS ALT2 TSL 2 BASIC6.34□□□□□ -1.39
SHANK3Q9BYB0 ALG11-202ENST00000521508 2558 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
SHANK3Q9BYB0 KIAA1328-201ENST00000280020 4853 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
SHANK3Q9BYB0 PSMA8-205ENST00000612461 1619 ntTSL 5 BASIC6.34□□□□□ -1.39
SHANK3Q9BYB0 ITPR1-205ENST00000456211 9717 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
SHANK3Q9BYB0 SLC16A9-201ENST00000395347 3646 ntAPPRIS P1 TSL 2 BASIC6.34□□□□□ -1.39
SHANK3Q9BYB0 AP002478.1-201ENST00000577848 1455 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
SHANK3Q9BYB0 HSD17B11-201ENST00000358290 1885 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
SHANK3Q9BYB0 FILIP1L-202ENST00000354552 3970 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
SHANK3Q9BYB0 THRB-202ENST00000356447 6345 ntAPPRIS P2 TSL 1 (best) BASIC6.34□□□□□ -1.4
SHANK3Q9BYB0 ATP2B4-204ENST00000367218 8918 ntTSL 1 (best) BASIC6.34□□□□□ -1.4
SHANK3Q9BYB0 UNC80-201ENST00000272845 13440 ntTSL 5 BASIC6.34□□□□□ -1.4
SHANK3Q9BYB0 AP000756.2-201ENST00000624168 2567 ntBASIC6.34□□□□□ -1.4
SHANK3Q9BYB0 AHCTF1-201ENST00000326225 8633 ntAPPRIS P2 TSL 1 (best) BASIC6.34□□□□□ -1.4
SHANK3Q9BYB0 FZD6-205ENST00000522566 3719 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
SHANK3Q9BYB0 AL672167.2-201ENST00000377164 879 ntBASIC6.33□□□□□ -1.4
SHANK3Q9BYB0 SVIL-AS1-202ENST00000414457 1243 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
SHANK3Q9BYB0 AL031428.1-201ENST00000427154 666 ntTSL 2 BASIC6.33□□□□□ -1.4
SHANK3Q9BYB0 MTND2P40-201ENST00000436718 841 ntBASIC6.33□□□□□ -1.4
SHANK3Q9BYB0 AP001434.1-201ENST00000444977 287 ntTSL 3 BASIC6.33□□□□□ -1.4
SHANK3Q9BYB0 AC010326.1-201ENST00000462726 602 ntBASIC6.33□□□□□ -1.4
SHANK3Q9BYB0 AC093840.1-201ENST00000511599 336 ntBASIC6.33□□□□□ -1.4
SHANK3Q9BYB0 AC092709.1-201ENST00000521355 1045 ntBASIC6.33□□□□□ -1.4
SHANK3Q9BYB0 LINC02444-201ENST00000550723 1256 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
SHANK3Q9BYB0 AC009063.2-203ENST00000567860 745 ntTSL 2 BASIC6.33□□□□□ -1.4
SHANK3Q9BYB0 AL133338.2-201ENST00000604292 736 ntBASIC6.33□□□□□ -1.4
SHANK3Q9BYB0 AC004777.1-201ENST00000624317 287 ntBASIC6.33□□□□□ -1.4
SHANK3Q9BYB0 AC068446.1-201ENST00000556425 1549 ntBASIC6.33□□□□□ -1.4
SHANK3Q9BYB0 AC018557.1-201ENST00000569274 1790 ntTSL 5 BASIC6.33□□□□□ -1.4
SHANK3Q9BYB0 SYCP1-209ENST00000613524 3034 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
SHANK3Q9BYB0 SLC1A3-216ENST00000613445 4030 ntTSL 5 BASIC6.33□□□□□ -1.4
SHANK3Q9BYB0 PDE5A-203ENST00000394439 6770 ntAPPRIS ALT2 TSL 5 BASIC6.33□□□□□ -1.4
SHANK3Q9BYB0 RGS4-202ENST00000367908 2606 ntTSL 2 BASIC6.33□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 81.8 ms