Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 TAX1BP1-203ENST00000409980 2629 ntAPPRIS ALT2 TSL 5 BASIC5.55□□□□□ -1.52
CCDC140Q96MF4 CPSF6-202ENST00000435070 6616 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
CCDC140Q96MF4 AC116366.3-205ENST00000640655 8032 ntAPPRIS ALT2 TSL 5 BASIC5.55□□□□□ -1.52
CCDC140Q96MF4 SYNPO2-203ENST00000434046 3588 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
CCDC140Q96MF4 MR1-204ENST00000367580 7704 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
CCDC140Q96MF4 SLC7A6-209ENST00000566454 6308 ntAPPRIS P1 TSL 5 BASIC5.55□□□□□ -1.52
CCDC140Q96MF4 DNAH12-201ENST00000311202 1555 ntTSL 2 BASIC5.55□□□□□ -1.52
CCDC140Q96MF4 BZW1-203ENST00000409600 6875 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
CCDC140Q96MF4 UBE2V1-201ENST00000340309 2536 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
CCDC140Q96MF4 SLC36A4-206ENST00000529184 1917 ntTSL 2 BASIC5.54□□□□□ -1.52
CCDC140Q96MF4 MAPK10-207ENST00000395166 3085 ntAPPRIS P2 TSL 2 BASIC5.54□□□□□ -1.52
CCDC140Q96MF4 PSG1-203ENST00000403380 1722 ntTSL 2 BASIC5.54□□□□□ -1.52
CCDC140Q96MF4 TMC5-206ENST00000561503 2487 ntTSL 2 BASIC5.54□□□□□ -1.52
CCDC140Q96MF4 SORBS1-219ENST00000607232 4374 ntAPPRIS ALT2 TSL 5 BASIC5.54□□□□□ -1.52
CCDC140Q96MF4 TUBBP10-201ENST00000427668 1301 ntBASIC5.54□□□□□ -1.52
CCDC140Q96MF4 EPHA3-201ENST00000336596 5809 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
CCDC140Q96MF4 GABPB2-201ENST00000368916 1680 ntAPPRIS ALT2 TSL 5 BASIC5.54□□□□□ -1.52
CCDC140Q96MF4 HSD17B13-202ENST00000328546 2397 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
CCDC140Q96MF4 OR8I2-201ENST00000302124 1010 ntAPPRIS P1 BASIC5.54□□□□□ -1.52
CCDC140Q96MF4 RNA5SP472-201ENST00000363868 119 ntBASIC5.54□□□□□ -1.52
CCDC140Q96MF4 FAM26F-203ENST00000368606 546 ntTSL 3 BASIC5.54□□□□□ -1.52
CCDC140Q96MF4 RNU6-921P-201ENST00000384361 107 ntBASIC5.54□□□□□ -1.52
CCDC140Q96MF4 ATP6V1E1-203ENST00000399798 994 ntTSL 2 BASIC5.54□□□□□ -1.52
CCDC140Q96MF4 Y_RNA.608-201ENST00000410647 95 ntBASIC5.54□□□□□ -1.52
CCDC140Q96MF4 RNU6-195P-201ENST00000411352 109 ntBASIC5.54□□□□□ -1.52
CCDC140Q96MF4 LIX1L-AS1-203ENST00000421764 287 ntTSL 2 BASIC5.54□□□□□ -1.52
CCDC140Q96MF4 AC083900.1-201ENST00000421964 469 ntTSL 2 BASIC5.54□□□□□ -1.52
CCDC140Q96MF4 BX890604.2-201ENST00000427883 474 ntBASIC5.54□□□□□ -1.52
CCDC140Q96MF4 AL121916.1-201ENST00000429405 308 ntBASIC5.54□□□□□ -1.52
CCDC140Q96MF4 AC023347.2-201ENST00000433994 462 ntBASIC5.54□□□□□ -1.52
CCDC140Q96MF4 AC012485.2-201ENST00000437372 982 ntTSL 5 BASIC5.54□□□□□ -1.52
CCDC140Q96MF4 AL807757.1-201ENST00000437846 424 ntTSL 3 BASIC5.54□□□□□ -1.52
CCDC140Q96MF4 AC003092.1-202ENST00000438538 743 ntTSL 3 BASIC5.54□□□□□ -1.52
CCDC140Q96MF4 CYP3A5-203ENST00000439761 1075 ntTSL 2 BASIC5.54□□□□□ -1.52
CCDC140Q96MF4 RABEPKP1-201ENST00000440529 1026 ntBASIC5.54□□□□□ -1.52
CCDC140Q96MF4 PGBD4P3-201ENST00000440731 581 ntBASIC5.54□□□□□ -1.52
CCDC140Q96MF4 AL445623.1-201ENST00000440888 237 ntTSL 3 BASIC5.54□□□□□ -1.52
CCDC140Q96MF4 CNOT7P2-201ENST00000441051 832 ntBASIC5.54□□□□□ -1.52
CCDC140Q96MF4 MTND5P14-201ENST00000441481 1267 ntBASIC5.54□□□□□ -1.52
CCDC140Q96MF4 AL512605.1-202ENST00000441919 381 ntBASIC5.54□□□□□ -1.52
CCDC140Q96MF4 UTAT33-202ENST00000449177 565 ntTSL 2 BASIC5.54□□□□□ -1.52
CCDC140Q96MF4 PRDX1P1-201ENST00000449329 596 ntBASIC5.54□□□□□ -1.52
CCDC140Q96MF4 AC010235.1-201ENST00000450613 547 ntTSL 3 BASIC5.54□□□□□ -1.52
CCDC140Q96MF4 MAMDC2-AS1-205ENST00000451488 317 ntTSL 3 BASIC5.54□□□□□ -1.52
CCDC140Q96MF4 AC243772.1-201ENST00000451620 410 ntBASIC5.54□□□□□ -1.52
CCDC140Q96MF4 MTCO3P20-201ENST00000454926 688 ntBASIC5.54□□□□□ -1.52
CCDC140Q96MF4 SEPT7P3-201ENST00000455017 621 ntBASIC5.54□□□□□ -1.52
CCDC140Q96MF4 AC013727.1-202ENST00000455716 580 ntTSL 4 BASIC5.54□□□□□ -1.52
CCDC140Q96MF4 AC010878.1-201ENST00000456500 1047 ntBASIC5.54□□□□□ -1.52
CCDC140Q96MF4 AC091770.1-201ENST00000456513 373 ntTSL 2 BASIC5.54□□□□□ -1.52
CCDC140Q96MF4 MTCO3P2-201ENST00000457365 171 ntBASIC5.54□□□□□ -1.52
CCDC140Q96MF4 AC013267.1-201ENST00000458227 267 ntBASIC5.54□□□□□ -1.52
CCDC140Q96MF4 AC135721.2-201ENST00000464237 300 ntBASIC5.54□□□□□ -1.52
CCDC140Q96MF4 RAD51AP1P1-201ENST00000484195 1001 ntBASIC5.54□□□□□ -1.52
CCDC140Q96MF4 AC110772.1-201ENST00000503037 474 ntTSL 3 BASIC5.54□□□□□ -1.52
CCDC140Q96MF4 MRPL49P1-201ENST00000505951 535 ntBASIC5.54□□□□□ -1.52
CCDC140Q96MF4 AC016687.2-203ENST00000506650 578 ntTSL 3 BASIC5.54□□□□□ -1.52
CCDC140Q96MF4 LINC02229-201ENST00000508486 661 ntTSL 3 BASIC5.54□□□□□ -1.52
CCDC140Q96MF4 AC074344.1-201ENST00000512823 224 ntBASIC5.54□□□□□ -1.52
CCDC140Q96MF4 RPS20-202ENST00000518875 671 ntTSL 2 BASIC5.54□□□□□ -1.52
CCDC140Q96MF4 AC013644.1-201ENST00000523724 555 ntTSL 4 BASIC5.54□□□□□ -1.52
CCDC140Q96MF4 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
CCDC140Q96MF4 PATE4-203ENST00000534411 897 ntAPPRIS ALT2 TSL 1 (best) BASIC5.54□□□□□ -1.52
CCDC140Q96MF4 LINC02384-205ENST00000539404 785 ntTSL 3 BASIC5.54□□□□□ -1.52
CCDC140Q96MF4 AC078860.1-201ENST00000546601 527 ntTSL 2 BASIC5.54□□□□□ -1.52
CCDC140Q96MF4 AC009135.1-201ENST00000549303 776 ntTSL 2 BASIC5.54□□□□□ -1.52
CCDC140Q96MF4 AC008127.2-201ENST00000549925 1075 ntBASIC5.54□□□□□ -1.52
CCDC140Q96MF4 PSMA3-213ENST00000557508 814 ntTSL 5 BASIC5.54□□□□□ -1.52
CCDC140Q96MF4 AC090515.3-201ENST00000560431 315 ntBASIC5.54□□□□□ -1.52
CCDC140Q96MF4 NR2F2-AS1-209ENST00000560800 549 ntTSL 4 BASIC5.54□□□□□ -1.52
CCDC140Q96MF4 AC004494.1-202ENST00000573820 480 ntTSL 4 BASIC5.54□□□□□ -1.52
CCDC140Q96MF4 AC061975.3-201ENST00000583209 244 ntBASIC5.54□□□□□ -1.52
CCDC140Q96MF4 LAMTOR5-AS1-207ENST00000590826 574 ntTSL 4 BASIC5.54□□□□□ -1.52
CCDC140Q96MF4 AL022097.1-201ENST00000602500 806 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
CCDC140Q96MF4 GMDS-AS1-215ENST00000606884 580 ntTSL 2 BASIC5.54□□□□□ -1.52
CCDC140Q96MF4 AC004067.1-201ENST00000608733 700 ntBASIC5.54□□□□□ -1.52
CCDC140Q96MF4 AC083798.2-201ENST00000608756 1152 ntTSL 4 BASIC5.54□□□□□ -1.52
CCDC140Q96MF4 AL669942.1-206ENST00000610473 783 ntTSL 3 BASIC5.54□□□□□ -1.52
CCDC140Q96MF4 AL136097.3-201ENST00000611097 505 ntBASIC5.54□□□□□ -1.52
CCDC140Q96MF4 AC012409.3-201ENST00000611343 981 ntBASIC5.54□□□□□ -1.52
CCDC140Q96MF4 AL109811.3-202ENST00000612387 651 ntTSL 3 BASIC5.54□□□□□ -1.52
CCDC140Q96MF4 AC078899.5-201ENST00000612475 178 ntBASIC5.54□□□□□ -1.52
CCDC140Q96MF4 AC074140.1-201ENST00000621617 208 ntBASIC5.54□□□□□ -1.52
CCDC140Q96MF4 MIR3688-2-201ENST00000636963 87 ntBASIC5.54□□□□□ -1.52
CCDC140Q96MF4 AC017000.1-201ENST00000639380 578 ntTSL 5 BASIC5.54□□□□□ -1.52
CCDC140Q96MF4 AC008147.2-201ENST00000552061 4713 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
CCDC140Q96MF4 PSD3-218ENST00000523619 8145 ntAPPRIS ALT2 TSL 1 (best) BASIC5.54□□□□□ -1.52
CCDC140Q96MF4 NXF2B-204ENST00000618302 2884 ntAPPRIS P1 TSL 2 BASIC5.54□□□□□ -1.52
CCDC140Q96MF4 POF1B-202ENST00000373145 1972 ntAPPRIS ALT2 TSL 1 (best) BASIC5.54□□□□□ -1.52
CCDC140Q96MF4 TRAPPC13-204ENST00000438419 1437 ntAPPRIS P4 TSL 1 (best) BASIC5.54□□□□□ -1.52
CCDC140Q96MF4 AC026523.1-202ENST00000559363 1401 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
CCDC140Q96MF4 ADGRL3-206ENST00000507164 4982 ntTSL 5 BASIC5.54□□□□□ -1.52
CCDC140Q96MF4 GUSBP1-205ENST00000607545 4157 ntTSL 2 BASIC5.54□□□□□ -1.52
CCDC140Q96MF4 ZNF718-201ENST00000510175 3495 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
CCDC140Q96MF4 BEST3-212ENST00000553096 2929 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
CCDC140Q96MF4 AC016745.2-201ENST00000608834 3443 ntBASIC5.54□□□□□ -1.52
CCDC140Q96MF4 OR12D3-201ENST00000396806 1869 ntAPPRIS P1 BASIC5.54□□□□□ -1.52
CCDC140Q96MF4 SOX6-201ENST00000316399 8808 ntAPPRIS P3 TSL 5 BASIC5.53□□□□□ -1.52
CCDC140Q96MF4 BNIP2-202ENST00000415213 1509 ntTSL 2 BASIC5.53□□□□□ -1.52
CCDC140Q96MF4 AF064860.2-201ENST00000457325 1542 ntTSL 3 BASIC5.53□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 86.3 ms