Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 RPL23AP1-201ENST00000428990 471 ntBASIC6.15□□□□□ -1.43
CCDC88AQ3V6T2 AC005154.2-201ENST00000438110 379 ntBASIC6.15□□□□□ -1.43
CCDC88AQ3V6T2 AL450472.1-201ENST00000439434 405 ntTSL 2 BASIC6.15□□□□□ -1.43
CCDC88AQ3V6T2 RPL10P17-201ENST00000453852 316 ntBASIC6.15□□□□□ -1.43
CCDC88AQ3V6T2 SCARNA22-201ENST00000503991 125 ntBASIC6.15□□□□□ -1.43
CCDC88AQ3V6T2 LINC01340-201ENST00000504012 724 ntTSL 3 BASIC6.15□□□□□ -1.43
CCDC88AQ3V6T2 LINC02217-201ENST00000505844 687 ntTSL 2 BASIC6.15□□□□□ -1.43
CCDC88AQ3V6T2 AC105177.1-201ENST00000523110 555 ntTSL 4 BASIC6.15□□□□□ -1.43
CCDC88AQ3V6T2 MTRNR2L12-201ENST00000600213 1049 ntAPPRIS P1 BASIC6.15□□□□□ -1.43
CCDC88AQ3V6T2 AC079906.1-201ENST00000621214 815 ntTSL 3 BASIC6.15□□□□□ -1.43
CCDC88AQ3V6T2 AP000843.1-201ENST00000624880 701 ntBASIC6.15□□□□□ -1.43
CCDC88AQ3V6T2 AL138828.1-201ENST00000626414 291 ntTSL 5 BASIC6.15□□□□□ -1.43
CCDC88AQ3V6T2 AC135068.12-201ENST00000637370 931 ntBASIC6.15□□□□□ -1.43
CCDC88AQ3V6T2 R3HCC1L-202ENST00000314594 3198 ntAPPRIS P1 TSL 5 BASIC6.15□□□□□ -1.43
CCDC88AQ3V6T2 DTNA-230ENST00000598334 3201 ntTSL 1 (best) BASIC6.15□□□□□ -1.43
CCDC88AQ3V6T2 PIGK-203ENST00000445065 4318 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
CCDC88AQ3V6T2 EDIL3-202ENST00000380138 4244 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
CCDC88AQ3V6T2 TMLHE-AS1-201ENST00000433624 1702 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
CCDC88AQ3V6T2 AL158066.1-201ENST00000451298 3796 ntTSL 2 BASIC6.14□□□□□ -1.43
CCDC88AQ3V6T2 RNA5SP388-201ENST00000362584 119 ntBASIC6.14□□□□□ -1.43
CCDC88AQ3V6T2 FAM196B-201ENST00000377365 2999 ntAPPRIS P1 TSL 2 BASIC6.14□□□□□ -1.43
CCDC88AQ3V6T2 AL035079.1-201ENST00000405210 287 ntBASIC6.14□□□□□ -1.43
CCDC88AQ3V6T2 RPS17P2-201ENST00000461663 408 ntBASIC6.14□□□□□ -1.43
CCDC88AQ3V6T2 CR383656.1-201ENST00000484916 377 ntBASIC6.14□□□□□ -1.43
CCDC88AQ3V6T2 AC115622.1-201ENST00000509628 587 ntTSL 3 BASIC6.14□□□□□ -1.43
CCDC88AQ3V6T2 RNU4ATAC18P-201ENST00000516179 126 ntBASIC6.14□□□□□ -1.43
CCDC88AQ3V6T2 MIR100HG-221ENST00000534297 572 ntTSL 4 BASIC6.14□□□□□ -1.43
CCDC88AQ3V6T2 PRR4-212ENST00000544994 326 ntAPPRIS ALT2 TSL 1 (best) BASIC6.14□□□□□ -1.43
CCDC88AQ3V6T2 AP005121.1-202ENST00000584414 555 ntTSL 2 BASIC6.14□□□□□ -1.43
CCDC88AQ3V6T2 ZFP30-209ENST00000589018 444 ntTSL 5 BASIC6.14□□□□□ -1.43
CCDC88AQ3V6T2 AC020915.5-201ENST00000596836 964 ntBASIC6.14□□□□□ -1.43
CCDC88AQ3V6T2 AC005191.1-201ENST00000603950 358 ntBASIC6.14□□□□□ -1.43
CCDC88AQ3V6T2 FANCD2-203ENST00000419585 5185 ntAPPRIS ALT2 TSL 1 (best) BASIC6.14□□□□□ -1.43
CCDC88AQ3V6T2 FCRL2-203ENST00000368181 1669 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
CCDC88AQ3V6T2 SLC1A2-203ENST00000395753 11689 ntAPPRIS ALT1 TSL 2 BASIC6.14□□□□□ -1.43
CCDC88AQ3V6T2 ALG10B-201ENST00000308742 10253 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
CCDC88AQ3V6T2 AP001605.1-201ENST00000420186 2603 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
CCDC88AQ3V6T2 ITGAV-204ENST00000433736 3288 ntAPPRIS ALT2 TSL 2 BASIC6.14□□□□□ -1.43
CCDC88AQ3V6T2 LIMA1-215ENST00000552823 3254 ntAPPRIS ALT2 TSL 2 BASIC6.14□□□□□ -1.43
CCDC88AQ3V6T2 ASTE1-208ENST00000514044 2504 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
CCDC88AQ3V6T2 LINC00907-201ENST00000585627 3324 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
CCDC88AQ3V6T2 DNAJC16-202ENST00000375847 6069 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
CCDC88AQ3V6T2 TBC1D23-201ENST00000344949 3656 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
CCDC88AQ3V6T2 AL592293.2-201ENST00000422292 996 ntBASIC6.13□□□□□ -1.43
CCDC88AQ3V6T2 AC017019.1-201ENST00000426129 261 ntBASIC6.13□□□□□ -1.43
CCDC88AQ3V6T2 AC122718.1-201ENST00000439448 744 ntBASIC6.13□□□□□ -1.43
CCDC88AQ3V6T2 AL359715.2-201ENST00000452402 682 ntTSL 2 BASIC6.13□□□□□ -1.43
CCDC88AQ3V6T2 FAM133DP-201ENST00000464802 691 ntBASIC6.13□□□□□ -1.43
CCDC88AQ3V6T2 AC034236.1-201ENST00000469891 373 ntBASIC6.13□□□□□ -1.43
CCDC88AQ3V6T2 AC117383.1-201ENST00000507698 422 ntTSL 3 BASIC6.13□□□□□ -1.43
CCDC88AQ3V6T2 AC027130.1-201ENST00000564490 686 ntTSL 2 BASIC6.13□□□□□ -1.43
CCDC88AQ3V6T2 BNIP3P22-201ENST00000593399 556 ntBASIC6.13□□□□□ -1.43
CCDC88AQ3V6T2 AL139041.1-201ENST00000605480 610 ntBASIC6.13□□□□□ -1.43
CCDC88AQ3V6T2 GXYLT1P4-203ENST00000616580 641 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
CCDC88AQ3V6T2 AL031658.2-201ENST00000616850 651 ntBASIC6.13□□□□□ -1.43
CCDC88AQ3V6T2 FTO-223ENST00000640179 210 ntTSL 5 BASIC6.13□□□□□ -1.43
CCDC88AQ3V6T2 FSTL5-201ENST00000306100 4831 ntAPPRIS P3 TSL 1 (best) BASIC6.13□□□□□ -1.43
CCDC88AQ3V6T2 CTNND1-212ENST00000525902 4984 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
CCDC88AQ3V6T2 CTNND1-214ENST00000526772 4966 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
CCDC88AQ3V6T2 PHC3-214ENST00000494943 5030 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
CCDC88AQ3V6T2 IL13RA2-201ENST00000243213 1371 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
CCDC88AQ3V6T2 EEF1A1P36-201ENST00000427807 1351 ntBASIC6.13□□□□□ -1.43
CCDC88AQ3V6T2 ADAM24P-201ENST00000398655 2101 ntBASIC6.13□□□□□ -1.43
CCDC88AQ3V6T2 FMN1-212ENST00000616417 13529 ntAPPRIS ALT2 TSL 5 BASIC6.13□□□□□ -1.43
CCDC88AQ3V6T2 SNORD113.2-201ENST00000364166 89 ntBASIC6.13□□□□□ -1.43
CCDC88AQ3V6T2 PRIM2-202ENST00000370687 909 ntTSL 3 BASIC6.13□□□□□ -1.43
CCDC88AQ3V6T2 IGLV4-3-201ENST00000390318 403 ntAPPRIS P1 BASIC6.13□□□□□ -1.43
CCDC88AQ3V6T2 DEFB115-201ENST00000400552 267 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
CCDC88AQ3V6T2 AL354726.1-201ENST00000411981 402 ntTSL 2 BASIC6.13□□□□□ -1.43
CCDC88AQ3V6T2 FABP7P1-201ENST00000424004 391 ntBASIC6.13□□□□□ -1.43
CCDC88AQ3V6T2 RPS27AP12-201ENST00000429552 465 ntBASIC6.13□□□□□ -1.43
CCDC88AQ3V6T2 Z95152.1-201ENST00000453556 656 ntBASIC6.13□□□□□ -1.43
CCDC88AQ3V6T2 AC022034.3-201ENST00000471393 478 ntBASIC6.13□□□□□ -1.43
CCDC88AQ3V6T2 RN7SL319P-201ENST00000480656 221 ntBASIC6.13□□□□□ -1.43
CCDC88AQ3V6T2 RPL7AP10-201ENST00000481016 791 ntBASIC6.13□□□□□ -1.43
CCDC88AQ3V6T2 C3orf67-209ENST00000482387 2617 ntTSL 5 BASIC6.13□□□□□ -1.43
CCDC88AQ3V6T2 AC111000.3-201ENST00000508057 576 ntBASIC6.13□□□□□ -1.43
CCDC88AQ3V6T2 BNIP3P5-201ENST00000562290 498 ntBASIC6.13□□□□□ -1.43
CCDC88AQ3V6T2 AC021483.2-201ENST00000567415 758 ntBASIC6.13□□□□□ -1.43
CCDC88AQ3V6T2 AC106729.1-201ENST00000567777 466 ntTSL 3 BASIC6.13□□□□□ -1.43
CCDC88AQ3V6T2 MIR7515HG-226ENST00000588330 1055 ntTSL 5 BASIC6.13□□□□□ -1.43
CCDC88AQ3V6T2 AP001153.1-201ENST00000641024 338 ntBASIC6.13□□□□□ -1.43
CCDC88AQ3V6T2 AKAP6-212ENST00000557272 4601 ntTSL 5 BASIC6.13□□□□□ -1.43
CCDC88AQ3V6T2 GTDC1-207ENST00000409298 2209 ntTSL 5 BASIC6.13□□□□□ -1.43
CCDC88AQ3V6T2 AC008695.1-201ENST00000514667 6393 ntAPPRIS P1 TSL 2 BASIC6.13□□□□□ -1.43
CCDC88AQ3V6T2 CCAT2-201ENST00000630920 1752 ntBASIC6.13□□□□□ -1.43
CCDC88AQ3V6T2 SLC16A9-201ENST00000395347 3646 ntAPPRIS P1 TSL 2 BASIC6.12□□□□□ -1.43
CCDC88AQ3V6T2 AC010531.4-202ENST00000569872 1718 ntTSL 2 BASIC6.12□□□□□ -1.43
CCDC88AQ3V6T2 ZNF83-204ENST00000545872 2633 ntAPPRIS P1 TSL 2 BASIC6.12□□□□□ -1.43
CCDC88AQ3V6T2 LINC00314-201ENST00000324988 607 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
CCDC88AQ3V6T2 RN7SKP153-201ENST00000365026 316 ntBASIC6.12□□□□□ -1.43
CCDC88AQ3V6T2 MIR23B-201ENST00000384832 97 ntBASIC6.12□□□□□ -1.43
CCDC88AQ3V6T2 AL356056.1-206ENST00000424615 407 ntTSL 5 BASIC6.12□□□□□ -1.43
CCDC88AQ3V6T2 POU6F2-AS1-201ENST00000433519 381 ntTSL 3 BASIC6.12□□□□□ -1.43
CCDC88AQ3V6T2 AC098484.1-201ENST00000447572 484 ntTSL 3 BASIC6.12□□□□□ -1.43
CCDC88AQ3V6T2 AC091167.1-201ENST00000492017 396 ntBASIC6.12□□□□□ -1.43
CCDC88AQ3V6T2 LINC01339-201ENST00000505712 440 ntTSL 2 BASIC6.12□□□□□ -1.43
CCDC88AQ3V6T2 SOX5P1-201ENST00000524155 1127 ntBASIC6.12□□□□□ -1.43
CCDC88AQ3V6T2 AL162872.1-201ENST00000557709 448 ntTSL 3 BASIC6.12□□□□□ -1.43
CCDC88AQ3V6T2 TMEM202-202ENST00000567679 588 ntAPPRIS ALT2 TSL 2 BASIC6.12□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 151 ms