Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 MTATP6P24-201ENST00000576835 677 ntBASIC4.67□□□□□ -1.66
HOXA1P49639 STARD6-202ENST00000577499 696 ntTSL 2 BASIC4.67□□□□□ -1.66
HOXA1P49639 AP000919.1-202ENST00000581139 1264 ntBASIC4.67□□□□□ -1.66
HOXA1P49639 AL589935.1-223ENST00000587015 808 ntTSL 5 BASIC4.67□□□□□ -1.66
HOXA1P49639 AL161457.2-206ENST00000592778 802 ntTSL 5 BASIC4.67□□□□□ -1.66
HOXA1P49639 AC138035.1-202ENST00000604669 683 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
HOXA1P49639 AC112220.2-201ENST00000605513 533 ntBASIC4.67□□□□□ -1.66
HOXA1P49639 SMAGP-208ENST00000605627 577 ntTSL 5 BASIC4.67□□□□□ -1.66
HOXA1P49639 MIR6885-201ENST00000612241 66 ntBASIC4.67□□□□□ -1.66
HOXA1P49639 AC243654.3-201ENST00000617427 735 ntTSL 5 BASIC4.67□□□□□ -1.66
HOXA1P49639 FAM27E2-201ENST00000619668 403 ntBASIC4.67□□□□□ -1.66
HOXA1P49639 FP236241.1-206ENST00000625005 987 ntTSL 5 BASIC4.67□□□□□ -1.66
HOXA1P49639 ATL2-217ENST00000629272 1242 ntTSL 5 BASIC4.67□□□□□ -1.66
HOXA1P49639 METTL8-218ENST00000638989 876 ntTSL 5 BASIC4.67□□□□□ -1.66
HOXA1P49639 METTL8-219ENST00000640734 726 ntTSL 2 BASIC4.67□□□□□ -1.66
HOXA1P49639 AC008079.2-201ENST00000623543 20396 ntBASIC4.67□□□□□ -1.66
HOXA1P49639 AC114947.2-201ENST00000565748 2125 ntBASIC4.67□□□□□ -1.66
HOXA1P49639 OBSCN-205ENST00000422127 24060 ntTSL 5 BASIC4.67□□□□□ -1.66
HOXA1P49639 C8orf22-201ENST00000303202 1499 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
HOXA1P49639 DYNC2LI1-210ENST00000605786 1346 ntAPPRIS ALT1 TSL 1 (best) BASIC4.67□□□□□ -1.66
HOXA1P49639 MATR3-203ENST00000502499 2664 ntTSL 5 BASIC4.67□□□□□ -1.66
HOXA1P49639 WDR5B-201ENST00000330689 3720 ntAPPRIS P1 BASIC4.67□□□□□ -1.66
HOXA1P49639 CDH19-201ENST00000262150 6341 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
HOXA1P49639 LINC01902-203ENST00000637369 7356 ntTSL 5 BASIC4.66□□□□□ -1.66
HOXA1P49639 PCDH11X-202ENST00000361655 4126 ntAPPRIS ALT2 TSL 1 (best) BASIC4.66□□□□□ -1.66
HOXA1P49639 OR14A16-202ENST00000641093 1367 ntAPPRIS P1 BASIC4.66□□□□□ -1.66
HOXA1P49639 MGC4859-201ENST00000634803 3118 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
HOXA1P49639 PMCHL1-201ENST00000418902 1917 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
HOXA1P49639 AC104118.1-201ENST00000607625 1589 ntBASIC4.66□□□□□ -1.66
HOXA1P49639 AC091305.2-201ENST00000624049 1576 ntBASIC4.66□□□□□ -1.66
HOXA1P49639 AC126323.6-202ENST00000568092 3511 ntBASIC4.66□□□□□ -1.66
HOXA1P49639 CLHC1-204ENST00000407122 2139 ntAPPRIS P1 TSL 5 BASIC4.66□□□□□ -1.66
HOXA1P49639 MYBPC1-209ENST00000547509 3749 ntAPPRIS ALT2 TSL 5 BASIC4.66□□□□□ -1.66
HOXA1P49639 CHM-201ENST00000357749 5442 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
HOXA1P49639 RN7SKP224-201ENST00000364140 325 ntBASIC4.66□□□□□ -1.66
HOXA1P49639 SAR1A-201ENST00000373236 437 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
HOXA1P49639 SNORA79B-201ENST00000410557 148 ntBASIC4.66□□□□□ -1.66
HOXA1P49639 RPS3AP25-201ENST00000411660 793 ntBASIC4.66□□□□□ -1.66
HOXA1P49639 TATDN1P1-201ENST00000414123 891 ntBASIC4.66□□□□□ -1.66
HOXA1P49639 AC004690.1-201ENST00000418216 328 ntBASIC4.66□□□□□ -1.66
HOXA1P49639 RPL7AP51-201ENST00000422016 760 ntBASIC4.66□□□□□ -1.66
HOXA1P49639 DSTNP5-201ENST00000427921 523 ntBASIC4.66□□□□□ -1.66
HOXA1P49639 KCTD9P1-201ENST00000430462 1167 ntBASIC4.66□□□□□ -1.66
HOXA1P49639 AL162725.2-201ENST00000430545 748 ntTSL 5 BASIC4.66□□□□□ -1.66
HOXA1P49639 MTCYBP15-201ENST00000433123 1127 ntBASIC4.66□□□□□ -1.66
HOXA1P49639 AC015923.1-201ENST00000435892 305 ntTSL 2 BASIC4.66□□□□□ -1.66
HOXA1P49639 LINC02384-202ENST00000441255 567 ntTSL 4 BASIC4.66□□□□□ -1.66
HOXA1P49639 DARS-AS1-206ENST00000446492 488 ntTSL 3 BASIC4.66□□□□□ -1.66
HOXA1P49639 AL445466.1-201ENST00000448432 357 ntBASIC4.66□□□□□ -1.66
HOXA1P49639 ZNF736P8Y-201ENST00000451913 669 ntBASIC4.66□□□□□ -1.66
HOXA1P49639 HMGB1P26-201ENST00000452520 628 ntBASIC4.66□□□□□ -1.66
HOXA1P49639 AC099670.1-201ENST00000455141 783 ntBASIC4.66□□□□□ -1.66
HOXA1P49639 AC096639.1-201ENST00000456240 347 ntTSL 5 BASIC4.66□□□□□ -1.66
HOXA1P49639 DUXAP8-207ENST00000456786 622 ntBASIC4.66□□□□□ -1.66
HOXA1P49639 AC008379.1-201ENST00000463655 464 ntBASIC4.66□□□□□ -1.66
HOXA1P49639 LINC02325-201ENST00000499910 1115 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
HOXA1P49639 AC104779.1-201ENST00000503557 441 ntTSL 3 BASIC4.66□□□□□ -1.66
HOXA1P49639 AC091917.1-201ENST00000506330 566 ntTSL 4 BASIC4.66□□□□□ -1.66
HOXA1P49639 AC117383.1-201ENST00000507698 422 ntTSL 3 BASIC4.66□□□□□ -1.66
HOXA1P49639 AC017091.1-202ENST00000510941 504 ntTSL 3 BASIC4.66□□□□□ -1.66
HOXA1P49639 AF186190.1-201ENST00000517470 480 ntBASIC4.66□□□□□ -1.66
HOXA1P49639 LINCR-0001-202ENST00000518098 524 ntTSL 4 BASIC4.66□□□□□ -1.66
HOXA1P49639 AC010476.1-201ENST00000519111 851 ntBASIC4.66□□□□□ -1.66
HOXA1P49639 WASHC5-AS1-201ENST00000519140 587 ntTSL 4 BASIC4.66□□□□□ -1.66
HOXA1P49639 AP000593.3-201ENST00000546065 578 ntTSL 2 BASIC4.66□□□□□ -1.66
HOXA1P49639 AC078922.1-201ENST00000547547 434 ntTSL 3 BASIC4.66□□□□□ -1.66
HOXA1P49639 DYNLL1P4-201ENST00000549314 266 ntBASIC4.66□□□□□ -1.66
HOXA1P49639 AC023905.1-201ENST00000559799 1178 ntTSL 2 BASIC4.66□□□□□ -1.66
HOXA1P49639 AC048382.2-201ENST00000560239 492 ntTSL 2 BASIC4.66□□□□□ -1.66
HOXA1P49639 AC104229.1-201ENST00000561364 255 ntBASIC4.66□□□□□ -1.66
HOXA1P49639 MT1CP-201ENST00000567054 174 ntBASIC4.66□□□□□ -1.66
HOXA1P49639 AC090618.1-201ENST00000571972 585 ntTSL 2 BASIC4.66□□□□□ -1.66
HOXA1P49639 RN7SL52P-201ENST00000584271 284 ntBASIC4.66□□□□□ -1.66
HOXA1P49639 AL136084.2-213ENST00000585704 690 ntTSL 5 BASIC4.66□□□□□ -1.66
HOXA1P49639 AC104365.1-202ENST00000587080 398 ntTSL 3 BASIC4.66□□□□□ -1.66
HOXA1P49639 MTCO2P2-201ENST00000591258 225 ntBASIC4.66□□□□□ -1.66
HOXA1P49639 NANOGP3-201ENST00000605855 286 ntBASIC4.66□□□□□ -1.66
HOXA1P49639 LINC02343-201ENST00000605909 573 ntTSL 4 BASIC4.66□□□□□ -1.66
HOXA1P49639 LINC00397-202ENST00000606785 409 ntTSL 5 BASIC4.66□□□□□ -1.66
HOXA1P49639 AC021851.1-201ENST00000608537 1082 ntBASIC4.66□□□□□ -1.66
HOXA1P49639 AC124016.2-201ENST00000610058 665 ntBASIC4.66□□□□□ -1.66
HOXA1P49639 DUXAP10-204ENST00000612052 616 ntBASIC4.66□□□□□ -1.66
HOXA1P49639 RN7SL787P-201ENST00000613000 284 ntBASIC4.66□□□□□ -1.66
HOXA1P49639 RN7SL544P-201ENST00000617232 284 ntBASIC4.66□□□□□ -1.66
HOXA1P49639 AC004943.1-201ENST00000620814 561 ntTSL 5 BASIC4.66□□□□□ -1.66
HOXA1P49639 RN7SL763P-201ENST00000620922 284 ntBASIC4.66□□□□□ -1.66
HOXA1P49639 AC007603.3-201ENST00000636915 979 ntBASIC4.66□□□□□ -1.66
HOXA1P49639 BACH1-201ENST00000286800 5669 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
HOXA1P49639 LINC00102-201ENST00000445785 1340 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
HOXA1P49639 CLSPN-202ENST00000318121 4169 ntAPPRIS P3 TSL 1 (best) BASIC4.66□□□□□ -1.66
HOXA1P49639 NCOA7-202ENST00000368357 5521 ntAPPRIS P3 TSL 1 (best) BASIC4.66□□□□□ -1.66
HOXA1P49639 FILIP1-203ENST00000393004 7807 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
HOXA1P49639 AC104964.3-201ENST00000606115 2860 ntBASIC4.66□□□□□ -1.66
HOXA1P49639 ZNF90P1-201ENST00000480493 1951 ntBASIC4.65□□□□□ -1.66
HOXA1P49639 FAM133A-202ENST00000332647 3159 ntAPPRIS P1 TSL 2 BASIC4.65□□□□□ -1.66
HOXA1P49639 ARHGEF3-203ENST00000413728 3992 ntTSL 1 (best) BASIC4.65□□□□□ -1.66
HOXA1P49639 NUP155-202ENST00000381843 4200 ntTSL 1 (best) BASIC4.65□□□□□ -1.66
HOXA1P49639 KIAA0408-204ENST00000483725 3284 ntAPPRIS P2 TSL 5 BASIC4.65□□□□□ -1.66
HOXA1P49639 LIMA1-215ENST00000552823 3254 ntAPPRIS ALT2 TSL 2 BASIC4.65□□□□□ -1.66
HOXA1P49639 MFSD8-239ENST00000641590 2479 ntBASIC4.65□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 78.7 ms