Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 GAPDHP14-201ENST00000450472 937 ntBASIC6.59□□□□□ -1.35
HOXC9P31274 AL359715.2-201ENST00000452402 682 ntTSL 2 BASIC6.59□□□□□ -1.35
HOXC9P31274 AL691482.1-201ENST00000453255 87 ntBASIC6.59□□□□□ -1.35
HOXC9P31274 CLEC2A-202ENST00000455827 916 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
HOXC9P31274 AC116562.1-201ENST00000485355 781 ntBASIC6.59□□□□□ -1.35
HOXC9P31274 AC090204.1-202ENST00000500843 737 ntTSL 5 BASIC6.59□□□□□ -1.35
HOXC9P31274 AC111000.3-201ENST00000508057 576 ntBASIC6.59□□□□□ -1.35
HOXC9P31274 AC087855.1-201ENST00000518178 430 ntTSL 3 BASIC6.59□□□□□ -1.35
HOXC9P31274 OR5M2P-201ENST00000529003 936 ntBASIC6.59□□□□□ -1.35
HOXC9P31274 DNAL1-206ENST00000554871 632 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
HOXC9P31274 AL133485.1-201ENST00000555966 392 ntTSL 2 BASIC6.59□□□□□ -1.35
HOXC9P31274 AC066612.1-202ENST00000561094 518 ntTSL 5 BASIC6.59□□□□□ -1.35
HOXC9P31274 AC009063.2-203ENST00000567860 745 ntTSL 2 BASIC6.59□□□□□ -1.35
HOXC9P31274 AC021549.1-201ENST00000580937 433 ntTSL 3 BASIC6.59□□□□□ -1.35
HOXC9P31274 AC239809.3-206ENST00000596091 741 ntTSL 5 BASIC6.59□□□□□ -1.35
HOXC9P31274 C7orf77-201ENST00000616258 548 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
HOXC9P31274 MIR6853-201ENST00000619642 74 ntBASIC6.59□□□□□ -1.35
HOXC9P31274 PIGN-239ENST00000639902 4439 ntTSL 5 BASIC6.59□□□□□ -1.35
HOXC9P31274 CDH7-201ENST00000323011 2728 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
HOXC9P31274 INTS6-203ENST00000442263 15428 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
HOXC9P31274 MUC17-201ENST00000306151 14247 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
HOXC9P31274 UACA-211ENST00000560441 4723 ntAPPRIS ALT2 TSL 5 BASIC6.59□□□□□ -1.35
HOXC9P31274 NCLP2-201ENST00000416078 1462 ntBASIC6.59□□□□□ -1.36
HOXC9P31274 ZNF266-207ENST00000592904 4401 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.36
HOXC9P31274 RNF180-202ENST00000389100 4906 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.36
HOXC9P31274 LINC01793-201ENST00000409590 2036 ntTSL 2 BASIC6.59□□□□□ -1.36
HOXC9P31274 CKAP5-210ENST00000529230 7121 ntAPPRIS P1 TSL 5 BASIC6.59□□□□□ -1.36
HOXC9P31274 STAU2-210ENST00000521210 1950 ntTSL 2 BASIC6.58□□□□□ -1.36
HOXC9P31274 PALMD-201ENST00000263174 2510 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
HOXC9P31274 SCAF11-212ENST00000549162 3934 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
HOXC9P31274 PTK2-213ENST00000519465 3279 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
HOXC9P31274 PSMA8-205ENST00000612461 1619 ntTSL 5 BASIC6.58□□□□□ -1.36
HOXC9P31274 R3HCC1L-202ENST00000314594 3198 ntAPPRIS P1 TSL 5 BASIC6.58□□□□□ -1.36
HOXC9P31274 ZFX-211ENST00000539115 6801 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
HOXC9P31274 VWC2L-201ENST00000312504 4610 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
HOXC9P31274 BANF2-202ENST00000377805 444 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
HOXC9P31274 AL357515.1-201ENST00000402967 542 ntBASIC6.58□□□□□ -1.36
HOXC9P31274 MTATP6P19-201ENST00000413797 659 ntBASIC6.58□□□□□ -1.36
HOXC9P31274 TBCAP2-201ENST00000416175 326 ntBASIC6.58□□□□□ -1.36
HOXC9P31274 AC244033.1-201ENST00000426826 870 ntBASIC6.58□□□□□ -1.36
HOXC9P31274 SCAND3P1-201ENST00000439854 1060 ntBASIC6.58□□□□□ -1.36
HOXC9P31274 AC114814.3-201ENST00000449362 663 ntTSL 2 BASIC6.58□□□□□ -1.36
HOXC9P31274 PDC-202ENST00000497198 1174 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
HOXC9P31274 HPRT1P1-201ENST00000509498 657 ntBASIC6.58□□□□□ -1.36
HOXC9P31274 RNU6-751P-201ENST00000516382 101 ntBASIC6.58□□□□□ -1.36
HOXC9P31274 OR11H7-201ENST00000553765 945 ntAPPRIS P1 BASIC6.58□□□□□ -1.36
HOXC9P31274 LINC02157-201ENST00000558885 447 ntTSL 5 BASIC6.58□□□□□ -1.36
HOXC9P31274 NDUFB4P11-201ENST00000560510 395 ntBASIC6.58□□□□□ -1.36
HOXC9P31274 AP000919.3-201ENST00000582591 568 ntTSL 3 BASIC6.58□□□□□ -1.36
HOXC9P31274 USP32P2-207ENST00000608376 253 ntTSL 5 BASIC6.58□□□□□ -1.36
HOXC9P31274 MIR6758-201ENST00000620653 63 ntBASIC6.58□□□□□ -1.36
HOXC9P31274 AC012414.7-202ENST00000622705 1090 ntBASIC6.58□□□□□ -1.36
HOXC9P31274 AC091932.2-201ENST00000623014 291 ntBASIC6.58□□□□□ -1.36
HOXC9P31274 USP28-213ENST00000544967 3498 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
HOXC9P31274 DNAH17-201ENST00000389840 13723 ntAPPRIS P5 TSL 5 BASIC6.58□□□□□ -1.36
HOXC9P31274 ARHGEF12-213ENST00000532993 8753 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
HOXC9P31274 RYR3-202ENST00000415757 15557 ntAPPRIS ALT2 TSL 2 BASIC6.57□□□□□ -1.36
HOXC9P31274 FZD6-205ENST00000522566 3719 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
HOXC9P31274 AC092329.3-201ENST00000611392 1904 ntAPPRIS P1 TSL 5 BASIC6.57□□□□□ -1.36
HOXC9P31274 MIR298-201ENST00000401212 88 ntBASIC6.57□□□□□ -1.36
HOXC9P31274 LINC00446-201ENST00000414743 459 ntTSL 5 BASIC6.57□□□□□ -1.36
HOXC9P31274 AL354863.1-204ENST00000436430 556 ntTSL 3 BASIC6.57□□□□□ -1.36
HOXC9P31274 MTND2P40-201ENST00000436718 841 ntBASIC6.57□□□□□ -1.36
HOXC9P31274 ATP6V0E1P2-201ENST00000441771 245 ntBASIC6.57□□□□□ -1.36
HOXC9P31274 AC004980.3-201ENST00000447046 365 ntBASIC6.57□□□□□ -1.36
HOXC9P31274 RPL5P16-201ENST00000471467 790 ntBASIC6.57□□□□□ -1.36
HOXC9P31274 TMED11P-203ENST00000502630 533 ntTSL 5 BASIC6.57□□□□□ -1.36
HOXC9P31274 UCHL1-AS1-201ENST00000507190 592 ntTSL 4 BASIC6.57□□□□□ -1.36
HOXC9P31274 LINC02472-201ENST00000512268 575 ntTSL 2 BASIC6.57□□□□□ -1.36
HOXC9P31274 AC034205.1-201ENST00000520621 638 ntBASIC6.57□□□□□ -1.36
HOXC9P31274 AC024681.2-201ENST00000523525 204 ntTSL 5 BASIC6.57□□□□□ -1.36
HOXC9P31274 AP003080.1-202ENST00000526526 915 ntBASIC6.57□□□□□ -1.36
HOXC9P31274 AL138960.1-201ENST00000613838 513 ntBASIC6.57□□□□□ -1.36
HOXC9P31274 AL022401.1-201ENST00000619498 108 ntBASIC6.57□□□□□ -1.36
HOXC9P31274 AC021106.3-201ENST00000623925 531 ntBASIC6.57□□□□□ -1.36
HOXC9P31274 CCDC195-201ENST00000638102 606 ntAPPRIS P1 TSL 5 BASIC6.57□□□□□ -1.36
HOXC9P31274 ZNF431-201ENST00000311048 13894 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
HOXC9P31274 ZNF559-201ENST00000317221 2732 ntTSL 2 BASIC6.57□□□□□ -1.36
HOXC9P31274 AC026951.1-201ENST00000559530 2459 ntBASIC6.57□□□□□ -1.36
HOXC9P31274 LRRC19-201ENST00000380055 3609 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
HOXC9P31274 DNAJB4-201ENST00000370763 2988 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
HOXC9P31274 SNRPB2-202ENST00000377943 1588 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
HOXC9P31274 RGS5-212ENST00000618415 5812 ntTSL 4 BASIC6.56□□□□□ -1.36
HOXC9P31274 DAZ1-205ENST00000540248 3268 ntTSL 5 BASIC6.56□□□□□ -1.36
HOXC9P31274 AC010531.4-202ENST00000569872 1718 ntTSL 2 BASIC6.56□□□□□ -1.36
HOXC9P31274 PHC3-217ENST00000497658 2087 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
HOXC9P31274 FSHB-202ENST00000417547 1890 ntAPPRIS P1 TSL 5 BASIC6.56□□□□□ -1.36
HOXC9P31274 C3orf67-209ENST00000482387 2617 ntTSL 5 BASIC6.56□□□□□ -1.36
HOXC9P31274 MS4A1-207ENST00000532073 2560 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
HOXC9P31274 GPATCH2-202ENST00000366935 5851 ntAPPRIS P1 TSL 2 BASIC6.56□□□□□ -1.36
HOXC9P31274 PRR4-201ENST00000228811 563 ntAPPRIS P3 TSL 1 (best) BASIC6.56□□□□□ -1.36
HOXC9P31274 AL590240.1-201ENST00000334118 313 ntBASIC6.56□□□□□ -1.36
HOXC9P31274 R3HCC1L-204ENST00000370586 941 ntTSL 3 BASIC6.56□□□□□ -1.36
HOXC9P31274 RPS3AP23-201ENST00000401762 784 ntBASIC6.56□□□□□ -1.36
HOXC9P31274 ARL4A-205ENST00000404894 840 ntAPPRIS P1 TSL 2 BASIC6.56□□□□□ -1.36
HOXC9P31274 RNA5SP345-201ENST00000410646 108 ntBASIC6.56□□□□□ -1.36
HOXC9P31274 CFLAR-AS1-201ENST00000415011 1072 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
HOXC9P31274 AC104462.2-201ENST00000418402 271 ntTSL 3 BASIC6.56□□□□□ -1.36
HOXC9P31274 COX6CP17-201ENST00000421389 185 ntBASIC6.56□□□□□ -1.36
HOXC9P31274 RPL18P10-201ENST00000425606 538 ntBASIC6.56□□□□□ -1.36
Retrieved 100 of 98,524 protein–RNA pairs in 73.7 ms