Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 ARPP21-AS1-201ENST00000415706 542 ntTSL 4 BASIC7.12□□□□□ -1.27
CHMP4AQ9BY43 AC104170.2-201ENST00000424246 678 ntTSL 3 BASIC7.12□□□□□ -1.27
CHMP4AQ9BY43 AL451047.1-201ENST00000424451 814 ntTSL 3 BASIC7.12□□□□□ -1.27
CHMP4AQ9BY43 AL590399.2-201ENST00000427536 309 ntBASIC7.12□□□□□ -1.27
CHMP4AQ9BY43 AL109761.1-201ENST00000428689 422 ntTSL 3 BASIC7.12□□□□□ -1.27
CHMP4AQ9BY43 AC018865.1-201ENST00000433507 578 ntTSL 4 BASIC7.12□□□□□ -1.27
CHMP4AQ9BY43 AC242426.1-201ENST00000435270 960 ntBASIC7.12□□□□□ -1.27
CHMP4AQ9BY43 AL390119.1-201ENST00000440329 312 ntBASIC7.12□□□□□ -1.27
CHMP4AQ9BY43 LINC01825-201ENST00000452381 850 ntTSL 3 BASIC7.12□□□□□ -1.27
CHMP4AQ9BY43 AL158825.2-201ENST00000455336 670 ntTSL 5 BASIC7.12□□□□□ -1.27
CHMP4AQ9BY43 RPL7P45-201ENST00000455851 743 ntBASIC7.12□□□□□ -1.27
CHMP4AQ9BY43 RN7SL447P-201ENST00000494711 245 ntBASIC7.12□□□□□ -1.27
CHMP4AQ9BY43 SUMO1P1-201ENST00000497904 306 ntBASIC7.12□□□□□ -1.27
CHMP4AQ9BY43 RPS17P5-201ENST00000498293 408 ntBASIC7.12□□□□□ -1.27
CHMP4AQ9BY43 RNA5SP362-201ENST00000516048 118 ntBASIC7.12□□□□□ -1.27
CHMP4AQ9BY43 SNORA48.9-201ENST00000516419 162 ntBASIC7.12□□□□□ -1.27
CHMP4AQ9BY43 AC009623.1-201ENST00000517964 1131 ntTSL 2 BASIC7.12□□□□□ -1.27
CHMP4AQ9BY43 HDAC2-AS2-217ENST00000523087 493 ntTSL 3 BASIC7.12□□□□□ -1.27
CHMP4AQ9BY43 AC079414.1-201ENST00000563114 488 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
CHMP4AQ9BY43 AC007496.1-201ENST00000565641 739 ntTSL 3 BASIC7.12□□□□□ -1.27
CHMP4AQ9BY43 ZNF971P-202ENST00000568619 461 ntTSL 3 BASIC7.12□□□□□ -1.27
CHMP4AQ9BY43 AC091563.1-202ENST00000574086 522 ntTSL 5 BASIC7.12□□□□□ -1.27
CHMP4AQ9BY43 AL391834.1-201ENST00000609609 560 ntBASIC7.12□□□□□ -1.27
CHMP4AQ9BY43 AC087633.2-201ENST00000618611 725 ntTSL 3 BASIC7.12□□□□□ -1.27
CHMP4AQ9BY43 OR5R1-201ENST00000623286 975 ntAPPRIS P1 BASIC7.12□□□□□ -1.27
CHMP4AQ9BY43 METTL15-211ENST00000634762 718 ntTSL 5 BASIC7.12□□□□□ -1.27
CHMP4AQ9BY43 AC074101.1-201ENST00000637861 241 ntBASIC7.12□□□□□ -1.27
CHMP4AQ9BY43 TRIM22-201ENST00000379965 2989 ntAPPRIS P1 TSL 1 (best) BASIC7.12□□□□□ -1.27
CHMP4AQ9BY43 ZNF571-201ENST00000328550 4113 ntAPPRIS P1 TSL 1 (best) BASIC7.12□□□□□ -1.27
CHMP4AQ9BY43 ZNF92-203ENST00000431504 2947 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
CHMP4AQ9BY43 C9orf153-204ENST00000613665 1738 ntAPPRIS P2 TSL 2 BASIC7.12□□□□□ -1.27
CHMP4AQ9BY43 AC114546.3-201ENST00000623582 1734 ntBASIC7.12□□□□□ -1.27
CHMP4AQ9BY43 FAM135A-202ENST00000361499 5042 ntAPPRIS ALT1 TSL 1 (best) BASIC7.12□□□□□ -1.27
CHMP4AQ9BY43 LINC01630-202ENST00000578152 3188 ntTSL 2 BASIC7.12□□□□□ -1.27
CHMP4AQ9BY43 SLCO1C1-209ENST00000545604 2557 ntTSL 2 BASIC7.12□□□□□ -1.27
CHMP4AQ9BY43 CLVS1-201ENST00000325897 3486 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
CHMP4AQ9BY43 PSD3-201ENST00000286485 6665 ntAPPRIS P3 TSL 1 (best) BASIC7.11□□□□□ -1.27
CHMP4AQ9BY43 SCN2A-202ENST00000375427 8553 ntAPPRIS ALT1 TSL 5 BASIC7.11□□□□□ -1.27
CHMP4AQ9BY43 UTS2B-201ENST00000340524 2395 ntAPPRIS P1 TSL 2 BASIC7.11□□□□□ -1.27
CHMP4AQ9BY43 PATL1-201ENST00000300146 4072 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
CHMP4AQ9BY43 PCDH15-215ENST00000409834 5401 ntTSL 5 BASIC7.11□□□□□ -1.27
CHMP4AQ9BY43 OR4S2-202ENST00000641692 2211 ntAPPRIS P1 BASIC7.11□□□□□ -1.27
CHMP4AQ9BY43 LGALS8-222ENST00000527974 1349 ntAPPRIS P4 TSL 5 BASIC7.11□□□□□ -1.27
CHMP4AQ9BY43 OR5B2-202ENST00000641342 2184 ntAPPRIS P1 BASIC7.11□□□□□ -1.27
CHMP4AQ9BY43 C12orf50-201ENST00000298699 1722 ntAPPRIS P1 TSL 2 BASIC7.11□□□□□ -1.27
CHMP4AQ9BY43 RPL39P5-201ENST00000273411 449 ntTSL 1 (best) BASIC7.11□□□□□ -1.27
CHMP4AQ9BY43 AC092681.1-201ENST00000297369 291 ntBASIC7.11□□□□□ -1.27
CHMP4AQ9BY43 RNU4-39P-201ENST00000362455 127 ntBASIC7.11□□□□□ -1.27
CHMP4AQ9BY43 ZSCAN12P1-201ENST00000406489 419 ntBASIC7.11□□□□□ -1.27
CHMP4AQ9BY43 AC096921.1-201ENST00000411661 375 ntBASIC7.11□□□□□ -1.27
CHMP4AQ9BY43 RANP4-201ENST00000413361 655 ntBASIC7.11□□□□□ -1.27
CHMP4AQ9BY43 AC073136.2-201ENST00000417282 849 ntBASIC7.11□□□□□ -1.27
CHMP4AQ9BY43 CASP5-203ENST00000418434 1023 ntTSL 5 BASIC7.11□□□□□ -1.27
CHMP4AQ9BY43 AC092651.1-201ENST00000426110 312 ntBASIC7.11□□□□□ -1.27
CHMP4AQ9BY43 AL160175.1-201ENST00000428124 247 ntBASIC7.11□□□□□ -1.27
CHMP4AQ9BY43 TMX2P1-201ENST00000436507 708 ntBASIC7.11□□□□□ -1.27
CHMP4AQ9BY43 AP000365.1-201ENST00000438850 546 ntTSL 4 BASIC7.11□□□□□ -1.27
CHMP4AQ9BY43 AC092106.1-201ENST00000444291 373 ntBASIC7.11□□□□□ -1.27
CHMP4AQ9BY43 AC105399.1-202ENST00000447303 205 ntBASIC7.11□□□□□ -1.27
CHMP4AQ9BY43 AL672138.1-201ENST00000450604 1015 ntBASIC7.11□□□□□ -1.27
CHMP4AQ9BY43 HGF-207ENST00000453018 721 ntTSL 3 BASIC7.11□□□□□ -1.27
CHMP4AQ9BY43 AL133445.1-201ENST00000467051 452 ntBASIC7.11□□□□□ -1.27
CHMP4AQ9BY43 SIAH1P1-201ENST00000479411 923 ntBASIC7.11□□□□□ -1.27
CHMP4AQ9BY43 AC007370.1-201ENST00000503163 316 ntTSL 2 BASIC7.11□□□□□ -1.27
CHMP4AQ9BY43 AC109464.3-201ENST00000509456 204 ntTSL 5 BASIC7.11□□□□□ -1.27
CHMP4AQ9BY43 OR5AM1P-201ENST00000532136 1032 ntBASIC7.11□□□□□ -1.27
CHMP4AQ9BY43 AL355076.2-201ENST00000555736 544 ntTSL 5 BASIC7.11□□□□□ -1.27
CHMP4AQ9BY43 AC023158.1-201ENST00000561632 1025 ntBASIC7.11□□□□□ -1.27
CHMP4AQ9BY43 LINC02129-201ENST00000564381 692 ntTSL 5 BASIC7.11□□□□□ -1.27
CHMP4AQ9BY43 ARL2BPP3-202ENST00000580773 420 ntTSL 5 BASIC7.11□□□□□ -1.27
CHMP4AQ9BY43 AL356580.1-201ENST00000604129 159 ntTSL 5 BASIC7.11□□□□□ -1.27
CHMP4AQ9BY43 MIR4435-2HG-220ENST00000609902 603 ntTSL 3 BASIC7.11□□□□□ -1.27
CHMP4AQ9BY43 AP000894.4-201ENST00000610185 483 ntBASIC7.11□□□□□ -1.27
CHMP4AQ9BY43 AL118522.2-201ENST00000616045 615 ntBASIC7.11□□□□□ -1.27
CHMP4AQ9BY43 MIR6886-201ENST00000619864 61 ntBASIC7.11□□□□□ -1.27
CHMP4AQ9BY43 uc_338.7-201ENST00000621834 124 ntBASIC7.11□□□□□ -1.27
CHMP4AQ9BY43 DCDC1-203ENST00000406071 4758 ntAPPRIS P2 TSL 5 BASIC7.11□□□□□ -1.27
CHMP4AQ9BY43 DPP8-210ENST00000559233 2953 ntAPPRIS P4 TSL 2 BASIC7.11□□□□□ -1.27
CHMP4AQ9BY43 PRKAA1-204ENST00000397128 5088 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
CHMP4AQ9BY43 AL022344.1-201ENST00000439913 3965 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
CHMP4AQ9BY43 IPCEF1-202ENST00000367220 1658 ntAPPRIS ALT2 TSL 2 BASIC7.1□□□□□ -1.27
CHMP4AQ9BY43 IFI16-203ENST00000359709 2609 ntAPPRIS ALT2 TSL 2 BASIC7.1□□□□□ -1.27
CHMP4AQ9BY43 NUP37-201ENST00000251074 1203 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
CHMP4AQ9BY43 TCEAL7-201ENST00000332431 1177 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
CHMP4AQ9BY43 COMMD6-204ENST00000377619 594 ntTSL 2 BASIC7.1□□□□□ -1.27
CHMP4AQ9BY43 TRAV23DV6-201ENST00000390451 409 ntAPPRIS P1 BASIC7.1□□□□□ -1.27
CHMP4AQ9BY43 AL136116.2-201ENST00000404020 785 ntBASIC7.1□□□□□ -1.27
CHMP4AQ9BY43 LINC00502-201ENST00000423621 445 ntTSL 3 BASIC7.1□□□□□ -1.27
CHMP4AQ9BY43 AL355357.1-201ENST00000433531 417 ntTSL 2 BASIC7.1□□□□□ -1.27
CHMP4AQ9BY43 AC012075.1-201ENST00000436549 580 ntBASIC7.1□□□□□ -1.27
CHMP4AQ9BY43 BX679664.2-201ENST00000439282 283 ntBASIC7.1□□□□□ -1.27
CHMP4AQ9BY43 AP000470.1-201ENST00000448063 693 ntTSL 5 BASIC7.1□□□□□ -1.27
CHMP4AQ9BY43 EPDR1-204ENST00000476620 555 ntTSL 4 BASIC7.1□□□□□ -1.27
CHMP4AQ9BY43 AC025181.1-201ENST00000477507 416 ntBASIC7.1□□□□□ -1.27
CHMP4AQ9BY43 TFDP2-211ENST00000479040 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC7.1□□□□□ -1.27
CHMP4AQ9BY43 RN7SL184P-201ENST00000488308 297 ntBASIC7.1□□□□□ -1.27
CHMP4AQ9BY43 EIF3LP3-201ENST00000495197 822 ntBASIC7.1□□□□□ -1.27
CHMP4AQ9BY43 HMGB1P44-201ENST00000508597 572 ntBASIC7.1□□□□□ -1.27
CHMP4AQ9BY43 PMP2-202ENST00000519260 1264 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
CHMP4AQ9BY43 AC078814.2-201ENST00000552996 535 ntTSL 4 BASIC7.1□□□□□ -1.27
Retrieved 100 of 98,524 protein–RNA pairs in 70.7 ms