Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AC008505.1-203ENST00000637345 1766 ntTSL 5 BASIC4.7□□□□□ -1.66
NKX3-1Q99801 JCHAIN-201ENST00000254801 1438 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
NKX3-1Q99801 ADAM29-203ENST00000445694 3244 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
NKX3-1Q99801 KCNJ1-206ENST00000440599 2539 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
NKX3-1Q99801 NPSR1-AS1-202ENST00000419766 4821 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
NKX3-1Q99801 EIF2AK2-201ENST00000233057 10042 ntAPPRIS P1 TSL 2 BASIC4.7□□□□□ -1.66
NKX3-1Q99801 LRRC19-201ENST00000380055 3609 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
NKX3-1Q99801 ZNF33A-201ENST00000307441 6196 ntAPPRIS ALT2 TSL 4 BASIC4.7□□□□□ -1.66
NKX3-1Q99801 SCN1A-218ENST00000640036 8131 ntAPPRIS ALT1 TSL 5 BASIC4.7□□□□□ -1.66
NKX3-1Q99801 ZNF534-202ENST00000332323 2086 ntAPPRIS P4 TSL 1 (best) BASIC4.69□□□□□ -1.66
NKX3-1Q99801 SLCO1C1-209ENST00000545604 2557 ntTSL 2 BASIC4.69□□□□□ -1.66
NKX3-1Q99801 HACD3-211ENST00000569894 1471 ntTSL 5 BASIC4.69□□□□□ -1.66
NKX3-1Q99801 ZNF845-201ENST00000458035 4311 ntAPPRIS P1 TSL 4 BASIC4.69□□□□□ -1.66
NKX3-1Q99801 GAS2L3-202ENST00000537247 2742 ntTSL 2 BASIC4.69□□□□□ -1.66
NKX3-1Q99801 ERVFRD-3-201ENST00000578561 1617 ntBASIC4.69□□□□□ -1.66
NKX3-1Q99801 AC004817.4-201ENST00000602396 3625 ntBASIC4.69□□□□□ -1.66
NKX3-1Q99801 ZNF429-209ENST00000618549 1889 ntTSL 5 BASIC4.69□□□□□ -1.66
NKX3-1Q99801 GJA9-201ENST00000357771 1799 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
NKX3-1Q99801 AC018557.1-201ENST00000569274 1790 ntTSL 5 BASIC4.69□□□□□ -1.66
NKX3-1Q99801 CYP3A43-201ENST00000222382 1515 ntAPPRIS P4 TSL 1 (best) BASIC4.69□□□□□ -1.66
NKX3-1Q99801 CASP1-208ENST00000527979 1521 ntTSL 5 BASIC4.69□□□□□ -1.66
NKX3-1Q99801 MIR375-201ENST00000362103 64 ntBASIC4.69□□□□□ -1.66
NKX3-1Q99801 RNA5SP394-201ENST00000364216 119 ntBASIC4.69□□□□□ -1.66
NKX3-1Q99801 SAR1A-201ENST00000373236 437 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
NKX3-1Q99801 AL139095.4-201ENST00000379928 500 ntTSL 2 BASIC4.69□□□□□ -1.66
NKX3-1Q99801 RNU6-1176P-201ENST00000390955 107 ntBASIC4.69□□□□□ -1.66
NKX3-1Q99801 TOMM7-203ENST00000405021 455 ntTSL 2 BASIC4.69□□□□□ -1.66
NKX3-1Q99801 METTL5-204ENST00000409340 472 ntTSL 5 BASIC4.69□□□□□ -1.66
NKX3-1Q99801 AC009498.1-201ENST00000419860 541 ntTSL 4 BASIC4.69□□□□□ -1.66
NKX3-1Q99801 LINC01889-201ENST00000430692 668 ntTSL 5 BASIC4.69□□□□□ -1.66
NKX3-1Q99801 MIR99AHG-205ENST00000435697 716 ntTSL 2 BASIC4.69□□□□□ -1.66
NKX3-1Q99801 HMGN1P36-201ENST00000446623 298 ntBASIC4.69□□□□□ -1.66
NKX3-1Q99801 MTND2P6-201ENST00000455337 1030 ntBASIC4.69□□□□□ -1.66
NKX3-1Q99801 AC108161.1-201ENST00000461060 402 ntBASIC4.69□□□□□ -1.66
NKX3-1Q99801 AC087672.1-201ENST00000479876 766 ntBASIC4.69□□□□□ -1.66
NKX3-1Q99801 OARD1-211ENST00000480585 829 ntTSL 3 BASIC4.69□□□□□ -1.66
NKX3-1Q99801 LARP7P4-201ENST00000481075 878 ntBASIC4.69□□□□□ -1.66
NKX3-1Q99801 SH3GLB1-202ENST00000482504 1199 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
NKX3-1Q99801 HMGB1P3-201ENST00000502802 616 ntBASIC4.69□□□□□ -1.66
NKX3-1Q99801 AC068672.3-203ENST00000505166 311 ntTSL 3 BASIC4.69□□□□□ -1.66
NKX3-1Q99801 AF250324.1-203ENST00000508156 517 ntTSL 3 BASIC4.69□□□□□ -1.66
NKX3-1Q99801 LINC02236-201ENST00000508881 552 ntTSL 4 BASIC4.69□□□□□ -1.66
NKX3-1Q99801 AC093770.1-201ENST00000511559 571 ntBASIC4.69□□□□□ -1.66
NKX3-1Q99801 AC011389.1-203ENST00000513790 573 ntTSL 4 BASIC4.69□□□□□ -1.66
NKX3-1Q99801 LINC02505-203ENST00000515128 756 ntTSL 5 BASIC4.69□□□□□ -1.66
NKX3-1Q99801 LINC01218-201ENST00000515150 481 ntTSL 3 BASIC4.69□□□□□ -1.66
NKX3-1Q99801 CYCSP22-201ENST00000517555 339 ntBASIC4.69□□□□□ -1.66
NKX3-1Q99801 CDC42P3-201ENST00000518493 633 ntBASIC4.69□□□□□ -1.66
NKX3-1Q99801 AC064802.1-201ENST00000521523 866 ntTSL 2 BASIC4.69□□□□□ -1.66
NKX3-1Q99801 AC109466.1-202ENST00000523648 748 ntTSL 3 BASIC4.69□□□□□ -1.66
NKX3-1Q99801 AC027544.3-201ENST00000535082 757 ntBASIC4.69□□□□□ -1.66
NKX3-1Q99801 PPFIA2-AS1-202ENST00000549161 1080 ntTSL 3 BASIC4.69□□□□□ -1.66
NKX3-1Q99801 NOP56P3-201ENST00000549457 385 ntBASIC4.69□□□□□ -1.66
NKX3-1Q99801 AC026401.1-201ENST00000549756 530 ntTSL 3 BASIC4.69□□□□□ -1.66
NKX3-1Q99801 AL355076.2-201ENST00000555736 544 ntTSL 5 BASIC4.69□□□□□ -1.66
NKX3-1Q99801 AC027458.1-201ENST00000563639 613 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
NKX3-1Q99801 AC055855.2-201ENST00000565993 500 ntTSL 2 BASIC4.69□□□□□ -1.66
NKX3-1Q99801 PRPF19P1-201ENST00000584766 898 ntBASIC4.69□□□□□ -1.66
NKX3-1Q99801 AC100775.1-201ENST00000590942 522 ntTSL 3 BASIC4.69□□□□□ -1.66
NKX3-1Q99801 AC084824.5-201ENST00000612009 413 ntBASIC4.69□□□□□ -1.66
NKX3-1Q99801 RN7SL544P-201ENST00000617232 284 ntBASIC4.69□□□□□ -1.66
NKX3-1Q99801 RN7SL763P-201ENST00000620922 284 ntBASIC4.69□□□□□ -1.66
NKX3-1Q99801 AL391262.2-201ENST00000622466 494 ntBASIC4.69□□□□□ -1.66
NKX3-1Q99801 LINC00254-202ENST00000633813 439 ntTSL 3 BASIC4.69□□□□□ -1.66
NKX3-1Q99801 AP002008.2-205ENST00000637111 1091 ntTSL 5 BASIC4.69□□□□□ -1.66
NKX3-1Q99801 PIGX-210ENST00000639143 831 ntAPPRIS ALT2 TSL 2 BASIC4.69□□□□□ -1.66
NKX3-1Q99801 EMSY-206ENST00000525038 4376 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
NKX3-1Q99801 MTND5P23-201ENST00000430812 1655 ntBASIC4.69□□□□□ -1.66
NKX3-1Q99801 LINC01902-203ENST00000637369 7356 ntTSL 5 BASIC4.69□□□□□ -1.66
NKX3-1Q99801 PHACTR2P1-201ENST00000605639 1414 ntBASIC4.69□□□□□ -1.66
NKX3-1Q99801 ABCA13-204ENST00000435803 17184 ntAPPRIS P2 TSL 1 (best) BASIC4.69□□□□□ -1.66
NKX3-1Q99801 SLC15A2-201ENST00000295605 2379 ntTSL 2 BASIC4.69□□□□□ -1.66
NKX3-1Q99801 PLCH1-AS1-201ENST00000475196 1308 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
NKX3-1Q99801 PCDH15-209ENST00000395433 6942 ntTSL 5 BASIC4.69□□□□□ -1.66
NKX3-1Q99801 SAMSN1-203ENST00000400566 1888 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
NKX3-1Q99801 SYT14-206ENST00000537238 5208 ntAPPRIS ALT2 TSL 5 BASIC4.69□□□□□ -1.66
NKX3-1Q99801 KBTBD3-201ENST00000526793 3751 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
NKX3-1Q99801 DSPP-202ENST00000399271 4331 ntAPPRIS P1 TSL 5 BASIC4.68□□□□□ -1.66
NKX3-1Q99801 HYDIN-201ENST00000288168 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC4.68□□□□□ -1.66
NKX3-1Q99801 PLCB4-204ENST00000378501 5833 ntAPPRIS P4 TSL 5 BASIC4.68□□□□□ -1.66
NKX3-1Q99801 SLFN12L-205ENST00000628453 1767 ntAPPRIS ALT2 TSL 5 BASIC4.68□□□□□ -1.66
NKX3-1Q99801 MAP2-202ENST00000360351 9711 ntAPPRIS P2 TSL 5 BASIC4.68□□□□□ -1.66
NKX3-1Q99801 LINC01933-204ENST00000524295 3591 ntTSL 2 BASIC4.68□□□□□ -1.66
NKX3-1Q99801 KLRC4-KLRK1-201ENST00000539300 1507 ntAPPRIS P5 TSL 2 BASIC4.68□□□□□ -1.66
NKX3-1Q99801 USMG5-201ENST00000309579 364 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
NKX3-1Q99801 OR14A16-201ENST00000357627 930 ntAPPRIS P1 BASIC4.68□□□□□ -1.66
NKX3-1Q99801 LST1-207ENST00000376092 285 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
NKX3-1Q99801 AL391422.1-201ENST00000402155 436 ntBASIC4.68□□□□□ -1.66
NKX3-1Q99801 Z86062.1-201ENST00000406773 777 ntBASIC4.68□□□□□ -1.66
NKX3-1Q99801 AL513325.1-201ENST00000417716 1034 ntBASIC4.68□□□□□ -1.66
NKX3-1Q99801 AC023347.1-202ENST00000419223 440 ntTSL 5 BASIC4.68□□□□□ -1.66
NKX3-1Q99801 AC096711.3-201ENST00000420721 582 ntTSL 4 BASIC4.68□□□□□ -1.66
NKX3-1Q99801 AL390115.1-201ENST00000425271 423 ntTSL 5 BASIC4.68□□□□□ -1.66
NKX3-1Q99801 AL136231.1-201ENST00000429407 730 ntBASIC4.68□□□□□ -1.66
NKX3-1Q99801 AL606490.7-201ENST00000433136 191 ntBASIC4.68□□□□□ -1.66
NKX3-1Q99801 RPL19P16-201ENST00000433839 588 ntBASIC4.68□□□□□ -1.66
NKX3-1Q99801 LINC02094-201ENST00000437646 520 ntTSL 2 BASIC4.68□□□□□ -1.66
NKX3-1Q99801 AC064862.4-201ENST00000442180 334 ntBASIC4.68□□□□□ -1.66
NKX3-1Q99801 AC007000.2-201ENST00000442564 487 ntBASIC4.68□□□□□ -1.66
NKX3-1Q99801 AL121970.1-201ENST00000447557 929 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 144.4 ms