Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 AMELX-202ENST00000380712 835 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
CCDC42Q96M95 AMELX-203ENST00000380714 793 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
CCDC42Q96M95 SNORA70.10-201ENST00000384515 134 ntBASIC5.36□□□□□ -1.55
CCDC42Q96M95 ATP5HP3-201ENST00000396994 486 ntBASIC5.36□□□□□ -1.55
CCDC42Q96M95 RN7SKP114-201ENST00000410327 279 ntBASIC5.36□□□□□ -1.55
CCDC42Q96M95 AC073257.2-201ENST00000413991 528 ntTSL 3 BASIC5.36□□□□□ -1.55
CCDC42Q96M95 VN1R3-201ENST00000418822 919 ntBASIC5.36□□□□□ -1.55
CCDC42Q96M95 TRBV29-1-201ENST00000422143 402 ntAPPRIS P1 BASIC5.36□□□□□ -1.55
CCDC42Q96M95 AC092162.1-201ENST00000432828 434 ntBASIC5.36□□□□□ -1.55
CCDC42Q96M95 AC084149.1-201ENST00000437233 284 ntTSL 5 BASIC5.36□□□□□ -1.55
CCDC42Q96M95 AC096644.1-201ENST00000446169 390 ntTSL 3 BASIC5.36□□□□□ -1.55
CCDC42Q96M95 ZIC4-AS1-201ENST00000462168 268 ntTSL 5 BASIC5.36□□□□□ -1.55
CCDC42Q96M95 LINC01487-201ENST00000462531 905 ntTSL 2 BASIC5.36□□□□□ -1.55
CCDC42Q96M95 AC092957.1-201ENST00000473299 570 ntTSL 4 BASIC5.36□□□□□ -1.55
CCDC42Q96M95 RN7SL184P-201ENST00000488308 297 ntBASIC5.36□□□□□ -1.55
CCDC42Q96M95 AC113382.2-201ENST00000506911 646 ntTSL 3 BASIC5.36□□□□□ -1.55
CCDC42Q96M95 LINC02505-202ENST00000510597 776 ntTSL 3 BASIC5.36□□□□□ -1.55
CCDC42Q96M95 AC090572.2-201ENST00000520649 761 ntTSL 3 BASIC5.36□□□□□ -1.55
CCDC42Q96M95 AC087477.4-201ENST00000560586 542 ntTSL 4 BASIC5.36□□□□□ -1.55
CCDC42Q96M95 AC008521.2-201ENST00000591021 259 ntBASIC5.36□□□□□ -1.55
CCDC42Q96M95 AC005162.3-202ENST00000609495 483 ntTSL 5 BASIC5.36□□□□□ -1.55
CCDC42Q96M95 AC126175.1-201ENST00000617041 758 ntBASIC5.36□□□□□ -1.55
CCDC42Q96M95 DDX18P5-201ENST00000534547 1306 ntBASIC5.36□□□□□ -1.55
CCDC42Q96M95 BTBD10P1-201ENST00000549824 1352 ntBASIC5.36□□□□□ -1.55
CCDC42Q96M95 RNMT-209ENST00000592764 4108 ntTSL 2 BASIC5.36□□□□□ -1.55
CCDC42Q96M95 CASC19-206ENST00000641028 1430 ntBASIC5.36□□□□□ -1.55
CCDC42Q96M95 MTCO1P46-201ENST00000451639 1491 ntBASIC5.36□□□□□ -1.55
CCDC42Q96M95 PTPN13-201ENST00000316707 7546 ntAPPRIS ALT2 TSL 1 (best) BASIC5.36□□□□□ -1.55
CCDC42Q96M95 TSPAN8-202ENST00000393330 1516 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
CCDC42Q96M95 AL161911.1-202ENST00000464488 1534 ntAPPRIS P1 TSL 5 BASIC5.36□□□□□ -1.55
CCDC42Q96M95 FGF12-204ENST00000445105 5406 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
CCDC42Q96M95 ZNF382-204ENST00000439428 2742 ntAPPRIS ALT2 TSL 1 (best) BASIC5.36□□□□□ -1.55
CCDC42Q96M95 SYT16-205ENST00000568344 13978 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
CCDC42Q96M95 ROBO2-213ENST00000614793 7662 ntTSL 5 BASIC5.35□□□□□ -1.55
CCDC42Q96M95 PCDH15-214ENST00000395446 3948 ntTSL 5 BASIC5.35□□□□□ -1.55
CCDC42Q96M95 EPHA3-202ENST00000452448 2546 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
CCDC42Q96M95 ANAPC1P1-201ENST00000426186 2145 ntBASIC5.35□□□□□ -1.55
CCDC42Q96M95 FGG-201ENST00000336098 1659 ntTSL 2 BASIC5.35□□□□□ -1.55
CCDC42Q96M95 PRG4-203ENST00000367485 4765 ntAPPRIS ALT2 TSL 5 BASIC5.35□□□□□ -1.55
CCDC42Q96M95 ART3-203ENST00000355810 1561 ntAPPRIS ALT2 TSL 1 (best) BASIC5.35□□□□□ -1.55
CCDC42Q96M95 AC020743.2-201ENST00000639870 1370 ntTSL 5 BASIC5.35□□□□□ -1.55
CCDC42Q96M95 LRRC53-201ENST00000294635 3859 ntAPPRIS P1 TSL 5 BASIC5.35□□□□□ -1.55
CCDC42Q96M95 OR51Q1-201ENST00000300778 1096 ntAPPRIS P1 BASIC5.35□□□□□ -1.55
CCDC42Q96M95 EIF4A1P1-201ENST00000420241 934 ntBASIC5.35□□□□□ -1.55
CCDC42Q96M95 AC108075.1-201ENST00000424692 529 ntBASIC5.35□□□□□ -1.55
CCDC42Q96M95 CKS1BP6-201ENST00000424932 240 ntBASIC5.35□□□□□ -1.55
CCDC42Q96M95 AC009478.1-201ENST00000429816 562 ntTSL 3 BASIC5.35□□□□□ -1.55
CCDC42Q96M95 RPL7L1P9-201ENST00000431298 745 ntBASIC5.35□□□□□ -1.55
CCDC42Q96M95 MAJIN-202ENST00000432175 838 ntAPPRIS P3 TSL 1 (best) BASIC5.35□□□□□ -1.55
CCDC42Q96M95 NPM1P33-201ENST00000438918 872 ntBASIC5.35□□□□□ -1.55
CCDC42Q96M95 LINC02038-201ENST00000439074 702 ntTSL 4 BASIC5.35□□□□□ -1.55
CCDC42Q96M95 RHEBP2-201ENST00000450289 600 ntBASIC5.35□□□□□ -1.55
CCDC42Q96M95 PPIA-203ENST00000451562 544 ntTSL 2 BASIC5.35□□□□□ -1.55
CCDC42Q96M95 AC007386.1-201ENST00000455212 582 ntBASIC5.35□□□□□ -1.55
CCDC42Q96M95 RN7SL517P-201ENST00000462240 305 ntBASIC5.35□□□□□ -1.55
CCDC42Q96M95 AC009127.1-201ENST00000467090 155 ntBASIC5.35□□□□□ -1.55
CCDC42Q96M95 AC010350.1-201ENST00000504908 231 ntBASIC5.35□□□□□ -1.55
CCDC42Q96M95 AL589674.2-201ENST00000604304 337 ntBASIC5.35□□□□□ -1.55
CCDC42Q96M95 AC104687.2-201ENST00000604442 342 ntBASIC5.35□□□□□ -1.55
CCDC42Q96M95 DARS-AS1-220ENST00000607985 660 ntTSL 5 BASIC5.35□□□□□ -1.55
CCDC42Q96M95 WWOX-217ENST00000620008 450 ntTSL 2 BASIC5.35□□□□□ -1.55
CCDC42Q96M95 AC072062.1-209ENST00000627336 772 ntTSL 5 BASIC5.35□□□□□ -1.55
CCDC42Q96M95 CTSLP2-203ENST00000628708 493 ntTSL 5 BASIC5.35□□□□□ -1.55
CCDC42Q96M95 AC136428.4-201ENST00000634254 1155 ntBASIC5.35□□□□□ -1.55
CCDC42Q96M95 METTL15-211ENST00000634762 718 ntTSL 5 BASIC5.35□□□□□ -1.55
CCDC42Q96M95 OR51Q1-202ENST00000641085 1096 ntAPPRIS P1 BASIC5.35□□□□□ -1.55
CCDC42Q96M95 GABRA3-201ENST00000370314 3712 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
CCDC42Q96M95 C6-201ENST00000263413 3661 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
CCDC42Q96M95 ASB14-202ENST00000487349 3179 ntAPPRIS P2 TSL 1 (best) BASIC5.35□□□□□ -1.55
CCDC42Q96M95 HYDIN-201ENST00000288168 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC5.35□□□□□ -1.55
CCDC42Q96M95 WDR63-201ENST00000294664 2995 ntAPPRIS P3 TSL 1 (best) BASIC5.35□□□□□ -1.55
CCDC42Q96M95 DCX-202ENST00000358070 9405 ntAPPRIS ALT1 TSL 1 (best) BASIC5.35□□□□□ -1.55
CCDC42Q96M95 PSG7-202ENST00000446844 2227 ntAPPRIS P5 TSL 5 BASIC5.35□□□□□ -1.55
CCDC42Q96M95 AC083843.3-201ENST00000623679 2186 ntBASIC5.35□□□□□ -1.55
CCDC42Q96M95 LINGO2-201ENST00000308675 3031 ntAPPRIS P1 TSL 5 BASIC5.34□□□□□ -1.55
CCDC42Q96M95 XIRP2-203ENST00000409195 12675 ntTSL 5 BASIC5.34□□□□□ -1.55
CCDC42Q96M95 EHBP1-202ENST00000405015 4108 ntAPPRIS ALT2 TSL 2 BASIC5.34□□□□□ -1.55
CCDC42Q96M95 DDHD2-202ENST00000517385 4113 ntTSL 2 BASIC5.34□□□□□ -1.55
CCDC42Q96M95 METTL15-201ENST00000303459 4068 ntTSL 2 BASIC5.34□□□□□ -1.55
CCDC42Q96M95 PANDAR-201ENST00000629595 1506 ntBASIC5.34□□□□□ -1.55
CCDC42Q96M95 TRIM77-201ENST00000398290 1353 ntAPPRIS P1 TSL 5 BASIC5.34□□□□□ -1.55
CCDC42Q96M95 AL158835.1-203ENST00000415305 3149 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
CCDC42Q96M95 AL033384.1-202ENST00000431554 3104 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
CCDC42Q96M95 AL672167.1-205ENST00000641112 3080 ntBASIC5.34□□□□□ -1.55
CCDC42Q96M95 METTL5-202ENST00000308099 629 ntTSL 3 BASIC5.34□□□□□ -1.55
CCDC42Q96M95 RNU4-44P-201ENST00000363050 141 ntBASIC5.34□□□□□ -1.55
CCDC42Q96M95 OR51B6-201ENST00000380219 939 ntAPPRIS P1 BASIC5.34□□□□□ -1.55
CCDC42Q96M95 AL031985.1-201ENST00000392713 418 ntBASIC5.34□□□□□ -1.55
CCDC42Q96M95 EIF4HP2-201ENST00000424380 563 ntBASIC5.34□□□□□ -1.55
CCDC42Q96M95 NMNAT1P2-201ENST00000435192 860 ntBASIC5.34□□□□□ -1.55
CCDC42Q96M95 AC016395.1-201ENST00000444086 465 ntTSL 3 BASIC5.34□□□□□ -1.55
CCDC42Q96M95 MRPL48P1-201ENST00000445390 636 ntBASIC5.34□□□□□ -1.55
CCDC42Q96M95 AL354714.3-201ENST00000447284 493 ntBASIC5.34□□□□□ -1.55
CCDC42Q96M95 PCBP1-AS1-237ENST00000452431 1194 ntTSL 4 BASIC5.34□□□□□ -1.55
CCDC42Q96M95 LINC01921-201ENST00000456163 393 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
CCDC42Q96M95 AL035454.1-201ENST00000470758 433 ntTSL 3 BASIC5.34□□□□□ -1.55
CCDC42Q96M95 NPM1P29-201ENST00000483112 803 ntBASIC5.34□□□□□ -1.55
CCDC42Q96M95 PPIAP19-201ENST00000486414 492 ntBASIC5.34□□□□□ -1.55
CCDC42Q96M95 AC093890.1-201ENST00000502554 540 ntBASIC5.34□□□□□ -1.55
CCDC42Q96M95 THUMPD3-AS1-215ENST00000521609 793 ntTSL 5 BASIC5.34□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 138.6 ms