Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 AC127024.6-201ENST00000621598 424 ntBASIC5.28□□□□□ -1.56
VPS39Q96JC1 PCDHB2-203ENST00000624874 565 ntTSL 5 BASIC5.28□□□□□ -1.56
VPS39Q96JC1 POU2F2-219ENST00000625670 371 ntTSL 5 BASIC5.28□□□□□ -1.56
VPS39Q96JC1 ATPAF1-212ENST00000542495 1779 ntTSL 2 BASIC5.28□□□□□ -1.56
VPS39Q96JC1 IL31RA-204ENST00000396834 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC5.28□□□□□ -1.56
VPS39Q96JC1 AC005332.5-201ENST00000591222 2919 ntBASIC5.28□□□□□ -1.56
VPS39Q96JC1 BMPR1APS1-201ENST00000403332 1598 ntBASIC5.28□□□□□ -1.56
VPS39Q96JC1 EHBP1-202ENST00000405015 4108 ntAPPRIS ALT2 TSL 2 BASIC5.28□□□□□ -1.56
VPS39Q96JC1 ADAM18-202ENST00000379866 2314 ntAPPRIS ALT2 TSL 1 (best) BASIC5.28□□□□□ -1.56
VPS39Q96JC1 DOPEY1-202ENST00000349129 8210 ntAPPRIS P3 TSL 1 (best) BASIC5.28□□□□□ -1.56
VPS39Q96JC1 KLHL4-202ENST00000373119 5818 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
VPS39Q96JC1 PLCB4-204ENST00000378501 5833 ntAPPRIS P4 TSL 5 BASIC5.28□□□□□ -1.56
VPS39Q96JC1 ZNF334-203ENST00000593880 2635 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
VPS39Q96JC1 CCNB3-201ENST00000276014 4513 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
VPS39Q96JC1 NUF2-202ENST00000367900 1842 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
VPS39Q96JC1 AL450326.2-201ENST00000421913 1962 ntBASIC5.27□□□□□ -1.57
VPS39Q96JC1 VPS13D-214ENST00000620676 16320 ntAPPRIS P4 TSL 1 (best) BASIC5.27□□□□□ -1.57
VPS39Q96JC1 FOXP1-IT1-201ENST00000498714 3539 ntTSL 2 BASIC5.27□□□□□ -1.57
VPS39Q96JC1 C2CD6-202ENST00000439140 5512 ntAPPRIS ALT2 TSL 1 (best) BASIC5.27□□□□□ -1.57
VPS39Q96JC1 CNOT6LP1-201ENST00000559681 1462 ntBASIC5.27□□□□□ -1.57
VPS39Q96JC1 WDR5B-201ENST00000330689 3720 ntAPPRIS P1 BASIC5.27□□□□□ -1.57
VPS39Q96JC1 PCDH9-203ENST00000456367 5072 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
VPS39Q96JC1 CNTN5-201ENST00000279463 5925 ntTSL 5 BASIC5.27□□□□□ -1.57
VPS39Q96JC1 NAP1L4P1-201ENST00000319092 1157 ntBASIC5.27□□□□□ -1.57
VPS39Q96JC1 RNA5SP234-201ENST00000363916 119 ntBASIC5.27□□□□□ -1.57
VPS39Q96JC1 RN7SKP224-201ENST00000364140 325 ntBASIC5.27□□□□□ -1.57
VPS39Q96JC1 RN7SKP15-201ENST00000364742 309 ntBASIC5.27□□□□□ -1.57
VPS39Q96JC1 OR2W1-201ENST00000377175 1028 ntAPPRIS P1 BASIC5.27□□□□□ -1.57
VPS39Q96JC1 RNU6-178P-201ENST00000384631 104 ntBASIC5.27□□□□□ -1.57
VPS39Q96JC1 RNF212B-201ENST00000399905 1071 ntTSL 5 BASIC5.27□□□□□ -1.57
VPS39Q96JC1 OR4K12P-201ENST00000406538 961 ntBASIC5.27□□□□□ -1.57
VPS39Q96JC1 AC005529.1-201ENST00000411969 289 ntTSL 5 BASIC5.27□□□□□ -1.57
VPS39Q96JC1 MTCYBP7-201ENST00000419540 1134 ntBASIC5.27□□□□□ -1.57
VPS39Q96JC1 AL158817.1-201ENST00000422310 933 ntTSL 3 BASIC5.27□□□□□ -1.57
VPS39Q96JC1 AL603840.1-203ENST00000424357 645 ntTSL 3 BASIC5.27□□□□□ -1.57
VPS39Q96JC1 AL356056.1-206ENST00000424615 407 ntTSL 5 BASIC5.27□□□□□ -1.57
VPS39Q96JC1 AL161722.2-201ENST00000434731 981 ntBASIC5.27□□□□□ -1.57
VPS39Q96JC1 AC046176.1-201ENST00000435260 1170 ntBASIC5.27□□□□□ -1.57
VPS39Q96JC1 AL450263.2-201ENST00000439400 589 ntBASIC5.27□□□□□ -1.57
VPS39Q96JC1 FHP1-201ENST00000442741 703 ntBASIC5.27□□□□□ -1.57
VPS39Q96JC1 RPL36AP39-201ENST00000445859 318 ntBASIC5.27□□□□□ -1.57
VPS39Q96JC1 HMGN1P36-201ENST00000446623 298 ntBASIC5.27□□□□□ -1.57
VPS39Q96JC1 AC005518.1-201ENST00000448131 1116 ntTSL 2 BASIC5.27□□□□□ -1.57
VPS39Q96JC1 RPL7L1P1-201ENST00000448259 785 ntBASIC5.27□□□□□ -1.57
VPS39Q96JC1 AL034380.1-201ENST00000448791 306 ntTSL 3 BASIC5.27□□□□□ -1.57
VPS39Q96JC1 Z99127.1-201ENST00000452442 670 ntTSL 5 BASIC5.27□□□□□ -1.57
VPS39Q96JC1 RPL31P53-201ENST00000457065 348 ntBASIC5.27□□□□□ -1.57
VPS39Q96JC1 AC117394.1-201ENST00000477323 567 ntBASIC5.27□□□□□ -1.57
VPS39Q96JC1 LARP7P4-201ENST00000481075 878 ntBASIC5.27□□□□□ -1.57
VPS39Q96JC1 AC090638.1-201ENST00000498296 909 ntBASIC5.27□□□□□ -1.57
VPS39Q96JC1 AC005740.3-201ENST00000520882 344 ntTSL 2 BASIC5.27□□□□□ -1.57
VPS39Q96JC1 AL355432.1-201ENST00000522960 564 ntTSL 3 BASIC5.27□□□□□ -1.57
VPS39Q96JC1 YWHABP2-201ENST00000540201 713 ntBASIC5.27□□□□□ -1.57
VPS39Q96JC1 BLZF2P-201ENST00000553776 1130 ntBASIC5.27□□□□□ -1.57
VPS39Q96JC1 MIR1273E-201ENST00000581165 102 ntBASIC5.27□□□□□ -1.57
VPS39Q96JC1 AC093330.1-201ENST00000583326 568 ntTSL 4 BASIC5.27□□□□□ -1.57
VPS39Q96JC1 AL162431.4-201ENST00000604674 411 ntBASIC5.27□□□□□ -1.57
VPS39Q96JC1 SAMD9L-209ENST00000610760 1221 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
VPS39Q96JC1 DEC1-204ENST00000614246 210 ntAPPRIS ALT2 TSL 1 (best) BASIC5.27□□□□□ -1.57
VPS39Q96JC1 AC074101.1-201ENST00000637861 241 ntBASIC5.27□□□□□ -1.57
VPS39Q96JC1 STAG2-205ENST00000371160 6045 ntAPPRIS P3 TSL 1 (best) BASIC5.27□□□□□ -1.57
VPS39Q96JC1 FBXL13-207ENST00000455112 2274 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
VPS39Q96JC1 AP000542.2-201ENST00000623199 6179 ntBASIC5.27□□□□□ -1.57
VPS39Q96JC1 CASC1-201ENST00000320267 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC5.27□□□□□ -1.57
VPS39Q96JC1 IQCH-202ENST00000358767 3062 ntTSL 5 BASIC5.27□□□□□ -1.57
VPS39Q96JC1 DNAH12-203ENST00000389536 2613 ntTSL 5 BASIC5.27□□□□□ -1.57
VPS39Q96JC1 GLYATL1-202ENST00000317391 1627 ntAPPRIS ALT2 TSL 1 (best) BASIC5.26□□□□□ -1.57
VPS39Q96JC1 C4orf17-201ENST00000326581 1636 ntAPPRIS P2 TSL 1 (best) BASIC5.26□□□□□ -1.57
VPS39Q96JC1 FILIP1-201ENST00000237172 4580 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
VPS39Q96JC1 ODAM-201ENST00000396094 1319 ntAPPRIS P1 TSL 5 BASIC5.26□□□□□ -1.57
VPS39Q96JC1 TEX11-201ENST00000344304 2977 ntAPPRIS P3 TSL 5 BASIC5.26□□□□□ -1.57
VPS39Q96JC1 VCAM1-202ENST00000347652 2812 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
VPS39Q96JC1 CROT-204ENST00000442291 1993 ntTSL 5 BASIC5.26□□□□□ -1.57
VPS39Q96JC1 ZNF573-217ENST00000590414 2225 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
VPS39Q96JC1 ANAPC10-201ENST00000309439 868 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
VPS39Q96JC1 CLEC7A-203ENST00000310002 425 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
VPS39Q96JC1 RNA5SP223-201ENST00000365174 120 ntBASIC5.26□□□□□ -1.57
VPS39Q96JC1 AL031985.1-201ENST00000392713 418 ntBASIC5.26□□□□□ -1.57
VPS39Q96JC1 AL034403.1-201ENST00000399414 885 ntBASIC5.26□□□□□ -1.57
VPS39Q96JC1 AC109779.1-201ENST00000414475 573 ntTSL 5 BASIC5.26□□□□□ -1.57
VPS39Q96JC1 AL590609.2-201ENST00000421430 368 ntBASIC5.26□□□□□ -1.57
VPS39Q96JC1 GAPDHP34-201ENST00000432112 823 ntBASIC5.26□□□□□ -1.57
VPS39Q96JC1 AL390119.1-201ENST00000440329 312 ntBASIC5.26□□□□□ -1.57
VPS39Q96JC1 TCEA1P3-201ENST00000443005 880 ntBASIC5.26□□□□□ -1.57
VPS39Q96JC1 AC104634.1-201ENST00000452720 462 ntBASIC5.26□□□□□ -1.57
VPS39Q96JC1 Z99916.1-201ENST00000454253 482 ntTSL 3 BASIC5.26□□□□□ -1.57
VPS39Q96JC1 AC034195.1-203ENST00000455703 728 ntTSL 2 BASIC5.26□□□□□ -1.57
VPS39Q96JC1 AC108161.1-201ENST00000461060 402 ntBASIC5.26□□□□□ -1.57
VPS39Q96JC1 AC074087.1-201ENST00000512059 724 ntBASIC5.26□□□□□ -1.57
VPS39Q96JC1 AF117829.1-208ENST00000521996 915 ntTSL 3 BASIC5.26□□□□□ -1.57
VPS39Q96JC1 HMGB1P40-201ENST00000525121 540 ntBASIC5.26□□□□□ -1.57
VPS39Q96JC1 AC073569.1-201ENST00000548469 667 ntTSL 2 BASIC5.26□□□□□ -1.57
VPS39Q96JC1 LINC02137-203ENST00000567448 930 ntTSL 5 BASIC5.26□□□□□ -1.57
VPS39Q96JC1 RBM22P1-201ENST00000578589 1214 ntBASIC5.26□□□□□ -1.57
VPS39Q96JC1 RN7SL708P-201ENST00000580952 299 ntBASIC5.26□□□□□ -1.57
VPS39Q96JC1 AL354733.2-210ENST00000586211 647 ntTSL 5 BASIC5.26□□□□□ -1.57
VPS39Q96JC1 FO393422.1-201ENST00000603908 708 ntBASIC5.26□□□□□ -1.57
VPS39Q96JC1 AC117490.2-201ENST00000610042 594 ntBASIC5.26□□□□□ -1.57
VPS39Q96JC1 AC245041.2-202ENST00000613389 493 ntTSL 5 BASIC5.26□□□□□ -1.57
VPS39Q96JC1 AL691477.1-201ENST00000624398 162 ntBASIC5.26□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 109.7 ms