Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 AC093799.2-201ENST00000610062 578 ntBASIC5.2□□□□□ -1.58
SHROOM3Q8TF72 AC087385.3-201ENST00000620477 187 ntBASIC5.2□□□□□ -1.58
SHROOM3Q8TF72 TDO2-208ENST00000536354 1701 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
SHROOM3Q8TF72 ZNF493-203ENST00000392288 5023 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
SHROOM3Q8TF72 FZD6-205ENST00000522566 3719 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
SHROOM3Q8TF72 WDR35-202ENST00000345530 6960 ntAPPRIS ALT1 TSL 1 (best) BASIC5.19□□□□□ -1.58
SHROOM3Q8TF72 PCGEM1-201ENST00000454040 1590 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
SHROOM3Q8TF72 ERI2-202ENST00000357967 3499 ntAPPRIS P1 TSL 5 BASIC5.19□□□□□ -1.58
SHROOM3Q8TF72 TRPM6-203ENST00000361255 8271 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
SHROOM3Q8TF72 EDA2R-203ENST00000396050 3429 ntAPPRIS ALT2 TSL 5 BASIC5.19□□□□□ -1.58
SHROOM3Q8TF72 AC093671.1-201ENST00000624981 2929 ntBASIC5.19□□□□□ -1.58
SHROOM3Q8TF72 RNU1-32P-201ENST00000363937 159 ntBASIC5.19□□□□□ -1.58
SHROOM3Q8TF72 GAPDHP15-201ENST00000398586 975 ntBASIC5.19□□□□□ -1.58
SHROOM3Q8TF72 C2orf73-203ENST00000405749 576 ntTSL 4 BASIC5.19□□□□□ -1.58
SHROOM3Q8TF72 AC114755.2-201ENST00000413520 361 ntBASIC5.19□□□□□ -1.58
SHROOM3Q8TF72 LINC01047-201ENST00000415193 778 ntTSL 5 BASIC5.19□□□□□ -1.58
SHROOM3Q8TF72 AL353689.2-201ENST00000433837 440 ntTSL 3 BASIC5.19□□□□□ -1.58
SHROOM3Q8TF72 RPL5P25-201ENST00000441148 775 ntBASIC5.19□□□□□ -1.58
SHROOM3Q8TF72 AC092647.3-201ENST00000443044 633 ntBASIC5.19□□□□□ -1.58
SHROOM3Q8TF72 OR7E125P-201ENST00000443450 846 ntBASIC5.19□□□□□ -1.58
SHROOM3Q8TF72 AL161621.1-201ENST00000444796 340 ntTSL 3 BASIC5.19□□□□□ -1.58
SHROOM3Q8TF72 AL589703.1-201ENST00000456032 256 ntTSL 5 BASIC5.19□□□□□ -1.58
SHROOM3Q8TF72 ATXN3-206ENST00000502250 1259 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
SHROOM3Q8TF72 RN7SKP147-201ENST00000517154 244 ntBASIC5.19□□□□□ -1.58
SHROOM3Q8TF72 AP001267.3-204ENST00000528578 423 ntTSL 3 BASIC5.19□□□□□ -1.58
SHROOM3Q8TF72 ARL1-211ENST00000551828 776 ntTSL 5 BASIC5.19□□□□□ -1.58
SHROOM3Q8TF72 NQO1-206ENST00000564043 892 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
SHROOM3Q8TF72 AL020997.2-201ENST00000602607 184 ntBASIC5.19□□□□□ -1.58
SHROOM3Q8TF72 AC020910.2-201ENST00000603635 610 ntBASIC5.19□□□□□ -1.58
SHROOM3Q8TF72 MIR4435-2HG-220ENST00000609902 603 ntTSL 3 BASIC5.19□□□□□ -1.58
SHROOM3Q8TF72 AP005131.7-201ENST00000610087 611 ntBASIC5.19□□□□□ -1.58
SHROOM3Q8TF72 DZIP3-201ENST00000361582 5350 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
SHROOM3Q8TF72 AC100871.1-201ENST00000507871 1456 ntBASIC5.19□□□□□ -1.58
SHROOM3Q8TF72 RGS4-202ENST00000367908 2606 ntTSL 2 BASIC5.19□□□□□ -1.58
SHROOM3Q8TF72 DNAH12-203ENST00000389536 2613 ntTSL 5 BASIC5.19□□□□□ -1.58
SHROOM3Q8TF72 STAU2-210ENST00000521210 1950 ntTSL 2 BASIC5.19□□□□□ -1.58
SHROOM3Q8TF72 LINC00989-201ENST00000508174 2080 ntTSL 3 BASIC5.19□□□□□ -1.58
SHROOM3Q8TF72 GPHN-204ENST00000543237 2459 ntTSL 2 BASIC5.19□□□□□ -1.58
SHROOM3Q8TF72 LINC01249-201ENST00000412134 2663 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
SHROOM3Q8TF72 EMSY-201ENST00000334736 5508 ntAPPRIS P3 TSL 5 BASIC5.19□□□□□ -1.58
SHROOM3Q8TF72 MAPK10-236ENST00000638313 3971 ntTSL 5 BASIC5.19□□□□□ -1.58
SHROOM3Q8TF72 LINC01619-207ENST00000551843 2205 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
SHROOM3Q8TF72 RNF19A-205ENST00000519449 4330 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
SHROOM3Q8TF72 MCM10-202ENST00000378714 4547 ntAPPRIS ALT2 TSL 1 (best) BASIC5.19□□□□□ -1.58
SHROOM3Q8TF72 PRRC2C-202ENST00000367742 10366 ntAPPRIS ALT2 TSL 5 BASIC5.19□□□□□ -1.58
SHROOM3Q8TF72 MED23-203ENST00000368058 4576 ntTSL 5 BASIC5.19□□□□□ -1.58
SHROOM3Q8TF72 TTC37-201ENST00000358746 5706 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
SHROOM3Q8TF72 AL606516.1-201ENST00000455438 1861 ntTSL 2 BASIC5.18□□□□□ -1.58
SHROOM3Q8TF72 ANGPT2-201ENST00000325203 5416 ntAPPRIS P3 TSL 1 (best) BASIC5.18□□□□□ -1.58
SHROOM3Q8TF72 AL583808.2-201ENST00000418078 1382 ntTSL 5 BASIC5.18□□□□□ -1.58
SHROOM3Q8TF72 SNORA62-201ENST00000365493 153 ntBASIC5.18□□□□□ -1.58
SHROOM3Q8TF72 MIR1182-201ENST00000408363 97 ntBASIC5.18□□□□□ -1.58
SHROOM3Q8TF72 AL049745.1-201ENST00000433953 286 ntBASIC5.18□□□□□ -1.58
SHROOM3Q8TF72 AL138878.2-201ENST00000440581 1241 ntBASIC5.18□□□□□ -1.58
SHROOM3Q8TF72 AL161630.1-201ENST00000450938 1299 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
SHROOM3Q8TF72 NPM1P28-201ENST00000492269 840 ntBASIC5.18□□□□□ -1.58
SHROOM3Q8TF72 AC010230.1-202ENST00000506265 592 ntTSL 5 BASIC5.18□□□□□ -1.58
SHROOM3Q8TF72 HAPLN1-206ENST00000514416 1145 ntTSL 5 BASIC5.18□□□□□ -1.58
SHROOM3Q8TF72 HNRNPRP2-201ENST00000528421 743 ntBASIC5.18□□□□□ -1.58
SHROOM3Q8TF72 SAMD15-202ENST00000533095 412 ntTSL 5 BASIC5.18□□□□□ -1.58
SHROOM3Q8TF72 RERGL-203ENST00000538724 973 ntAPPRIS P1 TSL 2 BASIC5.18□□□□□ -1.58
SHROOM3Q8TF72 MIR4691-201ENST00000583764 85 ntBASIC5.18□□□□□ -1.58
SHROOM3Q8TF72 MFSD8-216ENST00000641147 4009 ntBASIC5.18□□□□□ -1.58
SHROOM3Q8TF72 PSD3-201ENST00000286485 6665 ntAPPRIS P3 TSL 1 (best) BASIC5.18□□□□□ -1.58
SHROOM3Q8TF72 FOXP1-IT1-201ENST00000498714 3539 ntTSL 2 BASIC5.18□□□□□ -1.58
SHROOM3Q8TF72 FAM46D-202ENST00000538312 3106 ntAPPRIS P1 TSL 2 BASIC5.18□□□□□ -1.58
SHROOM3Q8TF72 RC3H1-201ENST00000258349 10988 ntAPPRIS P3 TSL 1 (best) BASIC5.18□□□□□ -1.58
SHROOM3Q8TF72 FAM184A-204ENST00000368475 3392 ntTSL 2 BASIC5.18□□□□□ -1.58
SHROOM3Q8TF72 SLX4IP-201ENST00000334534 6062 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
SHROOM3Q8TF72 ITCH-201ENST00000262650 3089 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
SHROOM3Q8TF72 TJP1-209ENST00000545208 5007 ntAPPRIS ALT2 TSL 5 BASIC5.18□□□□□ -1.58
SHROOM3Q8TF72 SMARCA2-206ENST00000382185 1584 ntTSL 2 BASIC5.18□□□□□ -1.58
SHROOM3Q8TF72 LINC01676-202ENST00000435253 1849 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
SHROOM3Q8TF72 LINC00474-201ENST00000374014 769 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
SHROOM3Q8TF72 MIR600-201ENST00000385007 98 ntBASIC5.18□□□□□ -1.58
SHROOM3Q8TF72 GTF2IP5-201ENST00000414608 731 ntBASIC5.18□□□□□ -1.58
SHROOM3Q8TF72 AL591719.2-201ENST00000437400 386 ntTSL 3 BASIC5.18□□□□□ -1.58
SHROOM3Q8TF72 AC122136.1-201ENST00000443971 478 ntTSL 3 BASIC5.18□□□□□ -1.58
SHROOM3Q8TF72 TRY2P-201ENST00000448860 689 ntBASIC5.18□□□□□ -1.58
SHROOM3Q8TF72 AC002075.1-201ENST00000457396 676 ntBASIC5.18□□□□□ -1.58
SHROOM3Q8TF72 AL049874.2-201ENST00000492636 288 ntBASIC5.18□□□□□ -1.58
SHROOM3Q8TF72 AL136537.1-202ENST00000501725 430 ntTSL 3 BASIC5.18□□□□□ -1.58
SHROOM3Q8TF72 LINC02215-201ENST00000503320 543 ntTSL 4 BASIC5.18□□□□□ -1.58
SHROOM3Q8TF72 AC010350.1-201ENST00000504908 231 ntBASIC5.18□□□□□ -1.58
SHROOM3Q8TF72 RNU6ATAC24P-201ENST00000516811 135 ntBASIC5.18□□□□□ -1.58
SHROOM3Q8TF72 CASP1-206ENST00000526568 1061 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
SHROOM3Q8TF72 PRR4-212ENST00000544994 326 ntAPPRIS ALT2 TSL 1 (best) BASIC5.18□□□□□ -1.58
SHROOM3Q8TF72 AC116553.2-201ENST00000564203 463 ntBASIC5.18□□□□□ -1.58
SHROOM3Q8TF72 RPL27-207ENST00000590864 569 ntTSL 2 BASIC5.18□□□□□ -1.58
SHROOM3Q8TF72 ZNF283-207ENST00000593164 1260 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
SHROOM3Q8TF72 SLC10A7-203ENST00000432059 3747 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
SHROOM3Q8TF72 PHLDB2-214ENST00000495180 4159 ntTSL 2 BASIC5.18□□□□□ -1.58
SHROOM3Q8TF72 PDE10A-201ENST00000366882 8233 ntAPPRIS P3 TSL 5 BASIC5.18□□□□□ -1.58
SHROOM3Q8TF72 KIAA1328-201ENST00000280020 4853 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
SHROOM3Q8TF72 TRAT1-202ENST00000426646 1596 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
SHROOM3Q8TF72 AC139769.2-201ENST00000599944 2291 ntTSL 2 BASIC5.17□□□□□ -1.58
SHROOM3Q8TF72 AC091046.3-201ENST00000631455 1574 ntBASIC5.17□□□□□ -1.58
SHROOM3Q8TF72 RYR3-209ENST00000634418 15078 ntAPPRIS ALT2 TSL 5 BASIC5.17□□□□□ -1.58
SHROOM3Q8TF72 SMCO1-201ENST00000397537 1812 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
SHROOM3Q8TF72 TCF7L2-206ENST00000355995 4073 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 79.4 ms