Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 OR10X1-201ENST00000623167 981 ntAPPRIS P1 BASIC1.57□□□□□ -2.16
SYNE1Q8NF91 AP2B1-222ENST00000628168 192 ntTSL 5 BASIC1.57□□□□□ -2.16
SYNE1Q8NF91 PATE4-201ENST00000457514 1983 ntAPPRIS P2 TSL 2 BASIC1.57□□□□□ -2.16
SYNE1Q8NF91 C12orf50-201ENST00000298699 1722 ntAPPRIS P1 TSL 2 BASIC1.57□□□□□ -2.16
SYNE1Q8NF91 PSG1-201ENST00000244296 2276 ntAPPRIS P3 TSL 1 (best) BASIC1.57□□□□□ -2.16
SYNE1Q8NF91 CFAP70-203ENST00000355577 3691 ntTSL 5 BASIC1.57□□□□□ -2.16
SYNE1Q8NF91 CACNB4-203ENST00000397327 2112 ntTSL 5 BASIC1.57□□□□□ -2.16
SYNE1Q8NF91 RPL18P10-201ENST00000425606 538 ntBASIC1.57□□□□□ -2.16
SYNE1Q8NF91 AC021876.1-201ENST00000425959 359 ntBASIC1.57□□□□□ -2.16
SYNE1Q8NF91 AC092957.1-201ENST00000473299 570 ntTSL 4 BASIC1.57□□□□□ -2.16
SYNE1Q8NF91 AC140172.1-201ENST00000502928 141 ntBASIC1.57□□□□□ -2.16
SYNE1Q8NF91 LINC02429-202ENST00000513836 694 ntTSL 3 BASIC1.57□□□□□ -2.16
SYNE1Q8NF91 RN7SKP122-201ENST00000515923 296 ntBASIC1.57□□□□□ -2.16
SYNE1Q8NF91 USP3-AS1-202ENST00000559357 455 ntTSL 2 BASIC1.57□□□□□ -2.16
SYNE1Q8NF91 AL162574.1-201ENST00000615702 950 ntBASIC1.57□□□□□ -2.16
SYNE1Q8NF91 LINC01002-236ENST00000634022 378 ntTSL 5 BASIC1.57□□□□□ -2.16
SYNE1Q8NF91 LINC01362-202ENST00000452901 1712 ntTSL 1 (best) BASIC1.57□□□□□ -2.16
SYNE1Q8NF91 R3HCC1L-205ENST00000612478 3337 ntTSL 5 BASIC1.57□□□□□ -2.16
SYNE1Q8NF91 ITCH-207ENST00000535650 2940 ntTSL 2 BASIC1.57□□□□□ -2.16
SYNE1Q8NF91 VCAM1-201ENST00000294728 3083 ntAPPRIS P1 TSL 1 (best) BASIC1.57□□□□□ -2.16
SYNE1Q8NF91 AC211486.3-201ENST00000412694 621 ntBASIC1.57□□□□□ -2.16
SYNE1Q8NF91 AC073062.1-201ENST00000434509 455 ntTSL 5 BASIC1.57□□□□□ -2.16
SYNE1Q8NF91 EIF2S2P2-201ENST00000447161 982 ntBASIC1.57□□□□□ -2.16
SYNE1Q8NF91 AC022034.3-201ENST00000471393 478 ntBASIC1.57□□□□□ -2.16
SYNE1Q8NF91 ARHGEF3-AS1-201ENST00000477246 489 ntTSL 2 BASIC1.57□□□□□ -2.16
SYNE1Q8NF91 LINC01340-201ENST00000504012 724 ntTSL 3 BASIC1.57□□□□□ -2.16
SYNE1Q8NF91 AC008574.1-201ENST00000514240 433 ntTSL 3 BASIC1.57□□□□□ -2.16
SYNE1Q8NF91 NSMCE2-206ENST00000519010 848 ntTSL 2 BASIC1.57□□□□□ -2.16
SYNE1Q8NF91 AC068831.8-201ENST00000620171 435 ntBASIC1.57□□□□□ -2.16
SYNE1Q8NF91 TECRL-201ENST00000381210 3573 ntAPPRIS P1 TSL 1 (best) BASIC1.57□□□□□ -2.16
SYNE1Q8NF91 LINS1-214ENST00000561308 1612 ntTSL 1 (best) BASIC1.57□□□□□ -2.16
SYNE1Q8NF91 SCN1A-204ENST00000423058 8191 ntAPPRIS ALT1 TSL 1 (best) BASIC1.57□□□□□ -2.16
SYNE1Q8NF91 WDPCP-202ENST00000398544 2063 ntAPPRIS ALT2 TSL 1 (best) BASIC1.57□□□□□ -2.16
SYNE1Q8NF91 CASC1-204ENST00000395990 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC1.57□□□□□ -2.16
SYNE1Q8NF91 AC091046.3-201ENST00000631455 1574 ntBASIC1.57□□□□□ -2.16
SYNE1Q8NF91 DOCK4-AS1-201ENST00000452714 2494 ntTSL 1 (best) BASIC1.57□□□□□ -2.16
SYNE1Q8NF91 AC011266.1-201ENST00000624119 3569 ntBASIC1.57□□□□□ -2.16
SYNE1Q8NF91 INTS6P1-201ENST00000504674 2530 ntBASIC1.57□□□□□ -2.16
SYNE1Q8NF91 PLCB4-201ENST00000278655 5430 ntAPPRIS ALT1 TSL 1 (best) BASIC1.57□□□□□ -2.16
SYNE1Q8NF91 TESPA1-203ENST00000524622 4188 ntAPPRIS ALT2 TSL 1 (best) BASIC1.57□□□□□ -2.16
SYNE1Q8NF91 DDR2-202ENST00000367922 10160 ntAPPRIS P1 TSL 1 (best) BASIC1.57□□□□□ -2.16
SYNE1Q8NF91 CKS1B-201ENST00000308987 759 ntAPPRIS P1 TSL 1 (best) BASIC1.57□□□□□ -2.16
SYNE1Q8NF91 RNASE9-201ENST00000338904 1049 ntAPPRIS P3 TSL 1 (best) BASIC1.57□□□□□ -2.16
SYNE1Q8NF91 FHIT-201ENST00000341848 174 ntTSL 3 BASIC1.57□□□□□ -2.16
SYNE1Q8NF91 U3.3-201ENST00000362986 216 ntBASIC1.57□□□□□ -2.16
SYNE1Q8NF91 AC073072.2-201ENST00000447425 348 ntBASIC1.57□□□□□ -2.16
SYNE1Q8NF91 MACROD2-IT1-201ENST00000448536 665 ntTSL 5 BASIC1.57□□□□□ -2.16
SYNE1Q8NF91 AC073358.1-201ENST00000505671 684 ntBASIC1.57□□□□□ -2.16
SYNE1Q8NF91 AC096759.1-201ENST00000510744 473 ntTSL 3 BASIC1.57□□□□□ -2.16
SYNE1Q8NF91 AC026434.1-201ENST00000511474 454 ntTSL 3 BASIC1.57□□□□□ -2.16
SYNE1Q8NF91 AC104036.1-201ENST00000523550 611 ntTSL 3 BASIC1.57□□□□□ -2.16
SYNE1Q8NF91 RNASE9-204ENST00000553541 1136 ntAPPRIS P3 TSL 1 (best) BASIC1.57□□□□□ -2.16
SYNE1Q8NF91 RNASE9-206ENST00000554964 1101 ntAPPRIS P3 TSL 1 (best) BASIC1.57□□□□□ -2.16
SYNE1Q8NF91 RNASE9-208ENST00000556208 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC1.57□□□□□ -2.16
SYNE1Q8NF91 RNASE9-210ENST00000557209 1137 ntAPPRIS ALT2 TSL 1 (best) BASIC1.57□□□□□ -2.16
SYNE1Q8NF91 RN7SL356P-201ENST00000582228 248 ntBASIC1.57□□□□□ -2.16
SYNE1Q8NF91 ZNF148-201ENST00000360647 9651 ntAPPRIS P1 TSL 1 (best) BASIC1.57□□□□□ -2.16
SYNE1Q8NF91 ADAMDEC1-204ENST00000522298 2044 ntAPPRIS ALT2 TSL 2 BASIC1.57□□□□□ -2.16
SYNE1Q8NF91 USP34-201ENST00000398571 11357 ntAPPRIS P1 TSL 5 BASIC1.57□□□□□ -2.16
SYNE1Q8NF91 PDE7A-201ENST00000379419 2425 ntAPPRIS P3 TSL 2 BASIC1.57□□□□□ -2.16
SYNE1Q8NF91 CAST-207ENST00000395813 4356 ntAPPRIS ALT2 TSL 5 BASIC1.57□□□□□ -2.16
SYNE1Q8NF91 RXFP1-203ENST00000343542 2130 ntTSL 1 (best) BASIC1.57□□□□□ -2.16
SYNE1Q8NF91 AL359715.3-201ENST00000569267 2123 ntBASIC1.57□□□□□ -2.16
SYNE1Q8NF91 SYT14-206ENST00000537238 5208 ntAPPRIS ALT2 TSL 5 BASIC1.57□□□□□ -2.16
SYNE1Q8NF91 AC010127.1-209ENST00000447809 2305 ntTSL 1 (best) BASIC1.57□□□□□ -2.16
SYNE1Q8NF91 TTBK2-201ENST00000267890 10905 ntAPPRIS P2 TSL 5 BASIC1.57□□□□□ -2.16
SYNE1Q8NF91 AC010132.3-201ENST00000442788 2430 ntAPPRIS P5 TSL 5 BASIC1.57□□□□□ -2.16
SYNE1Q8NF91 LINC00989-201ENST00000508174 2080 ntTSL 3 BASIC1.57□□□□□ -2.16
SYNE1Q8NF91 RNA5SP515-201ENST00000364570 118 ntBASIC1.56□□□□□ -2.16
SYNE1Q8NF91 SVBP-202ENST00000372522 650 ntAPPRIS P1 TSL 3 BASIC1.56□□□□□ -2.16
SYNE1Q8NF91 RN7SKP126-201ENST00000411143 300 ntBASIC1.56□□□□□ -2.16
SYNE1Q8NF91 AL139128.1-201ENST00000413921 941 ntBASIC1.56□□□□□ -2.16
SYNE1Q8NF91 AF186996.5-201ENST00000418098 904 ntBASIC1.56□□□□□ -2.16
SYNE1Q8NF91 RPL17P36-201ENST00000420302 549 ntBASIC1.56□□□□□ -2.16
SYNE1Q8NF91 AC016027.5-201ENST00000427227 210 ntBASIC1.56□□□□□ -2.16
SYNE1Q8NF91 AC044797.1-201ENST00000445744 679 ntBASIC1.56□□□□□ -2.16
SYNE1Q8NF91 NOP56P2-201ENST00000447491 769 ntBASIC1.56□□□□□ -2.16
SYNE1Q8NF91 AL356390.1-201ENST00000455684 397 ntBASIC1.56□□□□□ -2.16
SYNE1Q8NF91 AZIN1-AS1-203ENST00000517996 756 ntTSL 3 BASIC1.56□□□□□ -2.16
SYNE1Q8NF91 AC027130.1-201ENST00000564490 686 ntTSL 2 BASIC1.56□□□□□ -2.16
SYNE1Q8NF91 AC007599.2-201ENST00000573040 493 ntTSL 5 BASIC1.56□□□□□ -2.16
SYNE1Q8NF91 AC073091.2-201ENST00000603205 907 ntBASIC1.56□□□□□ -2.16
SYNE1Q8NF91 AC020910.2-201ENST00000603635 610 ntBASIC1.56□□□□□ -2.16
SYNE1Q8NF91 MYOCOS-202ENST00000636788 1039 ntAPPRIS ALT2 TSL 5 BASIC1.56□□□□□ -2.16
SYNE1Q8NF91 HSPA8P18-201ENST00000439846 1928 ntBASIC1.56□□□□□ -2.16
SYNE1Q8NF91 NRDE2-201ENST00000354366 14208 ntAPPRIS P1 TSL 1 (best) BASIC1.56□□□□□ -2.16
SYNE1Q8NF91 BMPR2-201ENST00000374574 9683 ntTSL 2 BASIC1.56□□□□□ -2.16
SYNE1Q8NF91 SCRG1-201ENST00000296506 4420 ntAPPRIS P1 TSL 1 (best) BASIC1.56□□□□□ -2.16
SYNE1Q8NF91 MAS1-201ENST00000252660 9841 ntAPPRIS P1 BASIC1.56□□□□□ -2.16
SYNE1Q8NF91 ZBED6-202ENST00000550078 12481 ntAPPRIS P1 TSL 1 (best) BASIC1.56□□□□□ -2.16
SYNE1Q8NF91 KYAT3-203ENST00000370491 1868 ntAPPRIS ALT1 TSL 2 BASIC1.56□□□□□ -2.16
SYNE1Q8NF91 IL1R1-202ENST00000409329 1862 ntTSL 5 BASIC1.56□□□□□ -2.16
SYNE1Q8NF91 HHLA2-210ENST00000491820 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC1.56□□□□□ -2.16
SYNE1Q8NF91 PHLDB2-201ENST00000393923 5673 ntTSL 2 BASIC1.56□□□□□ -2.16
SYNE1Q8NF91 PANK1-203ENST00000342512 2703 ntAPPRIS P1 TSL 1 (best) BASIC1.56□□□□□ -2.16
SYNE1Q8NF91 AC016712.1-201ENST00000431088 378 ntBASIC1.56□□□□□ -2.16
SYNE1Q8NF91 AL162726.1-201ENST00000436084 455 ntTSL 3 BASIC1.56□□□□□ -2.16
SYNE1Q8NF91 AP000943.1-201ENST00000438416 712 ntTSL 3 BASIC1.56□□□□□ -2.16
SYNE1Q8NF91 RBBP6-204ENST00000452655 854 ntTSL 1 (best) BASIC1.56□□□□□ -2.16
SYNE1Q8NF91 TRBV2-201ENST00000455382 421 ntAPPRIS P1 BASIC1.56□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 94.9 ms