Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 AC114755.2-201ENST00000413520 361 ntBASIC5.33□□□□□ -1.56
COL4A4P53420 AL121885.1-201ENST00000417957 451 ntTSL 3 BASIC5.33□□□□□ -1.56
COL4A4P53420 AL353801.1-201ENST00000425541 425 ntTSL 3 BASIC5.33□□□□□ -1.56
COL4A4P53420 RPL23AP1-201ENST00000428990 471 ntBASIC5.33□□□□□ -1.56
COL4A4P53420 NRBF2P3-201ENST00000432731 865 ntBASIC5.33□□□□□ -1.56
COL4A4P53420 AL731574.1-201ENST00000447757 456 ntTSL 5 BASIC5.33□□□□□ -1.56
COL4A4P53420 AL034380.1-201ENST00000448791 306 ntTSL 3 BASIC5.33□□□□□ -1.56
COL4A4P53420 AC021660.1-201ENST00000465006 554 ntBASIC5.33□□□□□ -1.56
COL4A4P53420 AC116562.1-201ENST00000485355 781 ntBASIC5.33□□□□□ -1.56
COL4A4P53420 TM4SF1-AS1-202ENST00000496491 754 ntTSL 2 BASIC5.33□□□□□ -1.56
COL4A4P53420 AC097460.1-204ENST00000515026 764 ntTSL 5 BASIC5.33□□□□□ -1.56
COL4A4P53420 OR8G5-201ENST00000524943 1041 ntBASIC5.33□□□□□ -1.56
COL4A4P53420 AC005537.1-201ENST00000588324 1238 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
COL4A4P53420 AL139041.1-201ENST00000605480 610 ntBASIC5.33□□□□□ -1.56
COL4A4P53420 AC005962.2-201ENST00000611427 652 ntBASIC5.33□□□□□ -1.56
COL4A4P53420 AC135068.12-201ENST00000637370 931 ntBASIC5.33□□□□□ -1.56
COL4A4P53420 DOCK4-216ENST00000494651 3282 ntTSL 5 BASIC5.33□□□□□ -1.56
COL4A4P53420 LINC00891-201ENST00000627173 4113 ntTSL 2 BASIC5.33□□□□□ -1.56
COL4A4P53420 CPNE4-214ENST00000617767 3556 ntTSL 2 BASIC5.33□□□□□ -1.56
COL4A4P53420 ZEB2-227ENST00000627532 9541 ntAPPRIS P2 TSL 1 (best) BASIC5.32□□□□□ -1.56
COL4A4P53420 NPIPB9-201ENST00000357796 2037 ntAPPRIS ALT2 TSL 1 (best) BASIC5.32□□□□□ -1.56
COL4A4P53420 ZNF26-202ENST00000534834 4853 ntAPPRIS ALT2 TSL 2 BASIC5.32□□□□□ -1.56
COL4A4P53420 PDE4D-226ENST00000546160 7690 ntTSL 5 BASIC5.32□□□□□ -1.56
COL4A4P53420 PARD3B-213ENST00000614500 7538 ntTSL 5 BASIC5.32□□□□□ -1.56
COL4A4P53420 AF131216.1-201ENST00000498997 5856 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
COL4A4P53420 BLM-201ENST00000355112 5258 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
COL4A4P53420 ETFBKMT-201ENST00000357721 6128 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
COL4A4P53420 IL5-201ENST00000231454 816 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
COL4A4P53420 RNA5SP28-201ENST00000363841 119 ntBASIC5.32□□□□□ -1.56
COL4A4P53420 OR5K2-201ENST00000427338 1060 ntAPPRIS P1 BASIC5.32□□□□□ -1.56
COL4A4P53420 SNAP25-AS1-204ENST00000451151 867 ntTSL 2 BASIC5.32□□□□□ -1.56
COL4A4P53420 CEACAMP6-201ENST00000452007 574 ntBASIC5.32□□□□□ -1.56
COL4A4P53420 LINC02265-201ENST00000510551 957 ntTSL 2 BASIC5.32□□□□□ -1.56
COL4A4P53420 RN7SKP92-201ENST00000517266 244 ntBASIC5.32□□□□□ -1.56
COL4A4P53420 TATDN1-202ENST00000517678 815 ntTSL 3 BASIC5.32□□□□□ -1.56
COL4A4P53420 CARD8-211ENST00000519332 500 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
COL4A4P53420 TATDN1-206ENST00000519548 889 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
COL4A4P53420 AC027216.1-201ENST00000577726 685 ntBASIC5.32□□□□□ -1.56
COL4A4P53420 AP000919.3-201ENST00000582591 568 ntTSL 3 BASIC5.32□□□□□ -1.56
COL4A4P53420 MIR4715-201ENST00000584117 79 ntBASIC5.32□□□□□ -1.56
COL4A4P53420 AC015911.9-201ENST00000591634 185 ntTSL 5 BASIC5.32□□□□□ -1.56
COL4A4P53420 RPL12P25-202ENST00000598100 674 ntBASIC5.32□□□□□ -1.56
COL4A4P53420 AC010618.3-202ENST00000598141 476 ntTSL 3 BASIC5.32□□□□□ -1.56
COL4A4P53420 AP001521.2-201ENST00000608772 546 ntBASIC5.32□□□□□ -1.56
COL4A4P53420 AP001029.2-203ENST00000589795 4910 ntBASIC5.32□□□□□ -1.56
COL4A4P53420 KIAA1109-201ENST00000264501 15896 ntAPPRIS P1 TSL 5 BASIC5.32□□□□□ -1.56
COL4A4P53420 GAPVD1-202ENST00000297933 6003 ntAPPRIS ALT2 TSL 1 (best) BASIC5.32□□□□□ -1.56
COL4A4P53420 NRXN1-242ENST00000635519 3553 ntTSL 5 BASIC5.32□□□□□ -1.56
COL4A4P53420 ZNF143-201ENST00000299606 2562 ntTSL 5 BASIC5.32□□□□□ -1.56
COL4A4P53420 TLR2-201ENST00000260010 4200 ntAPPRIS P1 BASIC5.32□□□□□ -1.56
COL4A4P53420 ANKRD44-201ENST00000282272 5147 ntAPPRIS P1 TSL 5 BASIC5.32□□□□□ -1.56
COL4A4P53420 OR2H1-201ENST00000377132 2253 ntAPPRIS P1 BASIC5.32□□□□□ -1.56
COL4A4P53420 ATPAF1-212ENST00000542495 1779 ntTSL 2 BASIC5.31□□□□□ -1.56
COL4A4P53420 LINC00314-201ENST00000324988 607 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
COL4A4P53420 RNA5-8SP7-201ENST00000363443 155 ntBASIC5.31□□□□□ -1.56
COL4A4P53420 MIR129-1-201ENST00000384972 72 ntBASIC5.31□□□□□ -1.56
COL4A4P53420 MAST4-207ENST00000407621 559 ntTSL 2 BASIC5.31□□□□□ -1.56
COL4A4P53420 AL592293.2-201ENST00000422292 996 ntBASIC5.31□□□□□ -1.56
COL4A4P53420 IGKV1OR9-1-201ENST00000424370 284 ntBASIC5.31□□□□□ -1.56
COL4A4P53420 AC005154.2-201ENST00000438110 379 ntBASIC5.31□□□□□ -1.56
COL4A4P53420 TDGF1P1-201ENST00000445734 527 ntBASIC5.31□□□□□ -1.56
COL4A4P53420 AC020779.1-201ENST00000478757 796 ntBASIC5.31□□□□□ -1.56
COL4A4P53420 RN7SL319P-201ENST00000480656 221 ntBASIC5.31□□□□□ -1.56
COL4A4P53420 AC093840.1-201ENST00000511599 336 ntBASIC5.31□□□□□ -1.56
COL4A4P53420 AC068413.1-201ENST00000517739 776 ntTSL 5 BASIC5.31□□□□□ -1.56
COL4A4P53420 AC110275.1-201ENST00000534420 623 ntAPPRIS P1 TSL 4 BASIC5.31□□□□□ -1.56
COL4A4P53420 AC009554.1-201ENST00000559251 399 ntTSL 5 BASIC5.31□□□□□ -1.56
COL4A4P53420 NUDT7-203ENST00000563839 316 ntTSL 3 BASIC5.31□□□□□ -1.56
COL4A4P53420 TMEM202-202ENST00000567679 588 ntAPPRIS ALT2 TSL 2 BASIC5.31□□□□□ -1.56
COL4A4P53420 MRPS21P9-201ENST00000571150 257 ntBASIC5.31□□□□□ -1.56
COL4A4P53420 MIR4660-201ENST00000583549 74 ntBASIC5.31□□□□□ -1.56
COL4A4P53420 MIR7515HG-226ENST00000588330 1055 ntTSL 5 BASIC5.31□□□□□ -1.56
COL4A4P53420 ZFP30-209ENST00000589018 444 ntTSL 5 BASIC5.31□□□□□ -1.56
COL4A4P53420 LINC01232-203ENST00000625369 576 ntTSL 4 BASIC5.31□□□□□ -1.56
COL4A4P53420 NRXN1-223ENST00000625891 1164 ntTSL 4 BASIC5.31□□□□□ -1.56
COL4A4P53420 LINC01338-201ENST00000627179 632 ntTSL 3 BASIC5.31□□□□□ -1.56
COL4A4P53420 PPIAL4G-201ENST00000419275 3856 ntAPPRIS P1 BASIC5.31□□□□□ -1.56
COL4A4P53420 FTO-206ENST00000471389 11766 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
COL4A4P53420 AL137058.3-201ENST00000624531 3099 ntBASIC5.31□□□□□ -1.56
COL4A4P53420 ATF6-201ENST00000367942 7496 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
COL4A4P53420 SCN2A-215ENST00000637266 8610 ntAPPRIS ALT1 TSL 5 BASIC5.31□□□□□ -1.56
COL4A4P53420 CNKSR3-205ENST00000607772 21063 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
COL4A4P53420 ELOVL7-203ENST00000505959 4165 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
COL4A4P53420 PLCH1-203ENST00000447496 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC5.31□□□□□ -1.56
COL4A4P53420 RBMS1-202ENST00000392753 3781 ntTSL 5 BASIC5.31□□□□□ -1.56
COL4A4P53420 AL358975.1-203ENST00000413352 2932 ntTSL 3 BASIC5.31□□□□□ -1.56
COL4A4P53420 LRMDA-208ENST00000496424 3923 ntTSL 2 BASIC5.31□□□□□ -1.56
COL4A4P53420 AMPD1-203ENST00000520113 2375 ntAPPRIS P3 TSL 1 (best) BASIC5.31□□□□□ -1.56
COL4A4P53420 EDIL3-202ENST00000380138 4244 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
COL4A4P53420 FILIP1L-202ENST00000354552 3970 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
COL4A4P53420 SNORA11F-201ENST00000408237 128 ntBASIC5.31□□□□□ -1.56
COL4A4P53420 AC009237.10-201ENST00000414112 510 ntBASIC5.31□□□□□ -1.56
COL4A4P53420 AC009237.5-201ENST00000414271 501 ntBASIC5.31□□□□□ -1.56
COL4A4P53420 AC122718.1-201ENST00000439448 744 ntBASIC5.31□□□□□ -1.56
COL4A4P53420 AP003774.2-202ENST00000449694 341 ntTSL 3 BASIC5.31□□□□□ -1.56
COL4A4P53420 RPL23AP56-201ENST00000460778 453 ntBASIC5.31□□□□□ -1.56
COL4A4P53420 FAM133DP-201ENST00000464802 691 ntBASIC5.31□□□□□ -1.56
COL4A4P53420 RN7SL189P-201ENST00000468631 289 ntBASIC5.31□□□□□ -1.56
COL4A4P53420 AC011276.1-201ENST00000469688 323 ntBASIC5.31□□□□□ -1.56
COL4A4P53420 AC022133.1-201ENST00000490961 571 ntBASIC5.31□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 133.6 ms