Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 SLC4A7-206ENST00000428386 7385 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
HOXC9P31274 AC093155.3-201ENST00000370548 2013 ntAPPRIS P1 TSL 2 BASIC6.62□□□□□ -1.35
HOXC9P31274 N4BP2L2-IT2-201ENST00000629393 4890 ntBASIC6.62□□□□□ -1.35
HOXC9P31274 AL132640.2-201ENST00000559968 1698 ntBASIC6.61□□□□□ -1.35
HOXC9P31274 NKIRAS1-209ENST00000614374 1612 ntAPPRIS P2 TSL 1 (best) BASIC6.61□□□□□ -1.35
HOXC9P31274 CHCHD7-203ENST00000396723 1550 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
HOXC9P31274 ARPP19-208ENST00000566423 5362 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
HOXC9P31274 MFAP1-201ENST00000267812 2155 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
HOXC9P31274 TRIM36-209ENST00000514154 1952 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
HOXC9P31274 AL121885.1-201ENST00000417957 451 ntTSL 3 BASIC6.61□□□□□ -1.35
HOXC9P31274 EIF2S2P3-201ENST00000428356 999 ntBASIC6.61□□□□□ -1.35
HOXC9P31274 COX6CP13-201ENST00000428703 226 ntBASIC6.61□□□□□ -1.35
HOXC9P31274 DNAJC19P7-201ENST00000428811 344 ntBASIC6.61□□□□□ -1.35
HOXC9P31274 BX276092.6-201ENST00000430476 250 ntBASIC6.61□□□□□ -1.35
HOXC9P31274 TXNP5-201ENST00000441043 315 ntBASIC6.61□□□□□ -1.35
HOXC9P31274 CYCSP42-201ENST00000450823 238 ntBASIC6.61□□□□□ -1.35
HOXC9P31274 BX276092.8-201ENST00000455722 250 ntBASIC6.61□□□□□ -1.35
HOXC9P31274 RPS17P2-201ENST00000461663 408 ntBASIC6.61□□□□□ -1.35
HOXC9P31274 AC091180.1-201ENST00000462104 372 ntBASIC6.61□□□□□ -1.35
HOXC9P31274 AC092905.1-201ENST00000467527 949 ntBASIC6.61□□□□□ -1.35
HOXC9P31274 RPL12P20-201ENST00000475538 479 ntBASIC6.61□□□□□ -1.35
HOXC9P31274 LINC02502-201ENST00000505122 642 ntTSL 4 BASIC6.61□□□□□ -1.35
HOXC9P31274 RNU6ATAC39P-201ENST00000516309 149 ntBASIC6.61□□□□□ -1.35
HOXC9P31274 AC068413.1-201ENST00000517739 776 ntTSL 5 BASIC6.61□□□□□ -1.35
HOXC9P31274 AC084083.1-201ENST00000526947 722 ntTSL 5 BASIC6.61□□□□□ -1.35
HOXC9P31274 AC020612.3-201ENST00000550644 570 ntTSL 2 BASIC6.61□□□□□ -1.35
HOXC9P31274 ARPP19-204ENST00000563277 955 ntTSL 2 BASIC6.61□□□□□ -1.35
HOXC9P31274 AC022884.2-201ENST00000578535 580 ntBASIC6.61□□□□□ -1.35
HOXC9P31274 MYLK-221ENST00000583087 678 ntTSL 4 BASIC6.61□□□□□ -1.35
HOXC9P31274 AC012557.1-201ENST00000607115 611 ntBASIC6.61□□□□□ -1.35
HOXC9P31274 AC034238.1-215ENST00000609792 219 ntTSL 5 BASIC6.61□□□□□ -1.35
HOXC9P31274 AC083809.1-201ENST00000615051 472 ntBASIC6.61□□□□□ -1.35
HOXC9P31274 CCDC25-212ENST00000640944 261 ntTSL 5 BASIC6.61□□□□□ -1.35
HOXC9P31274 IFIT1-201ENST00000371804 1880 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
HOXC9P31274 ZNF347-201ENST00000334197 7960 ntAPPRIS P3 TSL 1 (best) BASIC6.61□□□□□ -1.35
HOXC9P31274 MAP3K7-201ENST00000369320 3328 ntTSL 5 BASIC6.61□□□□□ -1.35
HOXC9P31274 ATP1B4-201ENST00000218008 3868 ntAPPRIS ALT1 TSL 1 (best) BASIC6.61□□□□□ -1.35
HOXC9P31274 B3GALT2-201ENST00000367434 3274 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
HOXC9P31274 RNF19A-205ENST00000519449 4330 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
HOXC9P31274 HEATR1-203ENST00000366582 8447 ntAPPRIS P1 TSL 5 BASIC6.61□□□□□ -1.35
HOXC9P31274 LINC00989-201ENST00000508174 2080 ntTSL 3 BASIC6.61□□□□□ -1.35
HOXC9P31274 EHBP1-202ENST00000405015 4108 ntAPPRIS ALT2 TSL 2 BASIC6.61□□□□□ -1.35
HOXC9P31274 AL355834.1-201ENST00000556602 3965 ntBASIC6.6□□□□□ -1.35
HOXC9P31274 RFC3-202ENST00000434425 1461 ntTSL 5 BASIC6.6□□□□□ -1.35
HOXC9P31274 HEMGN-202ENST00000616898 2305 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
HOXC9P31274 ETV1-207ENST00000405358 4181 ntTSL 5 BASIC6.6□□□□□ -1.35
HOXC9P31274 BAALC-AS1-201ENST00000499522 1353 ntTSL 5 BASIC6.6□□□□□ -1.35
HOXC9P31274 SNCA-213ENST00000618500 3022 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
HOXC9P31274 DNAJC12-201ENST00000225171 1201 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
HOXC9P31274 U3.30-201ENST00000391308 210 ntBASIC6.6□□□□□ -1.35
HOXC9P31274 LRRC37BP1-201ENST00000398851 714 ntBASIC6.6□□□□□ -1.35
HOXC9P31274 AL035079.1-201ENST00000405210 287 ntBASIC6.6□□□□□ -1.35
HOXC9P31274 U3.32-201ENST00000408116 212 ntBASIC6.6□□□□□ -1.35
HOXC9P31274 RFESDP1-201ENST00000422350 461 ntBASIC6.6□□□□□ -1.35
HOXC9P31274 AL031767.1-201ENST00000426374 386 ntTSL 5 BASIC6.6□□□□□ -1.35
HOXC9P31274 AL031428.1-201ENST00000427154 666 ntTSL 2 BASIC6.6□□□□□ -1.35
HOXC9P31274 C4BPAP2-201ENST00000428434 478 ntBASIC6.6□□□□□ -1.35
HOXC9P31274 AC068287.1-201ENST00000430283 295 ntBASIC6.6□□□□□ -1.35
HOXC9P31274 GSTA7P-201ENST00000438425 448 ntBASIC6.6□□□□□ -1.35
HOXC9P31274 AL161618.1-201ENST00000438738 761 ntTSL 5 BASIC6.6□□□□□ -1.35
HOXC9P31274 RPL7AP61-201ENST00000443410 636 ntBASIC6.6□□□□□ -1.35
HOXC9P31274 AP000402.1-201ENST00000446404 540 ntTSL 3 BASIC6.6□□□□□ -1.35
HOXC9P31274 AC000111.2-201ENST00000448200 210 ntBASIC6.6□□□□□ -1.35
HOXC9P31274 AC079760.2-201ENST00000449361 681 ntTSL 5 BASIC6.6□□□□□ -1.35
HOXC9P31274 AC234781.3-201ENST00000452540 973 ntBASIC6.6□□□□□ -1.35
HOXC9P31274 NDUFA5P9-201ENST00000472609 340 ntBASIC6.6□□□□□ -1.35
HOXC9P31274 SCARNA22-201ENST00000503991 125 ntBASIC6.6□□□□□ -1.35
HOXC9P31274 SAMD15-202ENST00000533095 412 ntTSL 5 BASIC6.6□□□□□ -1.35
HOXC9P31274 AC027369.5-201ENST00000533838 755 ntBASIC6.6□□□□□ -1.35
HOXC9P31274 AC009562.1-202ENST00000558755 565 ntTSL 4 BASIC6.6□□□□□ -1.35
HOXC9P31274 AC087500.2-201ENST00000575056 498 ntTSL 5 BASIC6.6□□□□□ -1.35
HOXC9P31274 AC010401.3-201ENST00000576600 582 ntTSL 4 BASIC6.6□□□□□ -1.35
HOXC9P31274 AC098935.2-201ENST00000604222 466 ntBASIC6.6□□□□□ -1.35
HOXC9P31274 AL024498.1-201ENST00000606522 1100 ntTSL 3 BASIC6.6□□□□□ -1.35
HOXC9P31274 AC007497.1-201ENST00000610421 561 ntBASIC6.6□□□□□ -1.35
HOXC9P31274 PCA3_2.1-201ENST00000612507 409 ntBASIC6.6□□□□□ -1.35
HOXC9P31274 OR10X1-201ENST00000623167 981 ntAPPRIS P1 BASIC6.6□□□□□ -1.35
HOXC9P31274 ZNF492-201ENST00000456783 4245 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
HOXC9P31274 RNF182-207ENST00000537663 3382 ntAPPRIS P1 TSL 4 BASIC6.6□□□□□ -1.35
HOXC9P31274 CFI-202ENST00000394635 2053 ntAPPRIS ALT2 TSL 2 BASIC6.6□□□□□ -1.35
HOXC9P31274 MAP3K20-202ENST00000375213 3741 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
HOXC9P31274 IREB2-201ENST00000258886 6354 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
HOXC9P31274 ADGRL2-209ENST00000370727 5164 ntTSL 5 BASIC6.6□□□□□ -1.35
HOXC9P31274 DGKB-201ENST00000399322 6684 ntAPPRIS P2 TSL 5 BASIC6.6□□□□□ -1.35
HOXC9P31274 CUBN-202ENST00000377833 11949 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
HOXC9P31274 MSL3P1-202ENST00000440028 1468 ntBASIC6.6□□□□□ -1.35
HOXC9P31274 UBXN7-201ENST00000296328 10568 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
HOXC9P31274 LRMDA-208ENST00000496424 3923 ntTSL 2 BASIC6.59□□□□□ -1.35
HOXC9P31274 MTRNR2L6-201ENST00000604952 1447 ntAPPRIS P1 BASIC6.59□□□□□ -1.35
HOXC9P31274 EXO1-201ENST00000348581 3192 ntAPPRIS P3 TSL 1 (best) BASIC6.59□□□□□ -1.35
HOXC9P31274 KLHL4-201ENST00000373114 2445 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
HOXC9P31274 APAF1-205ENST00000547045 3744 ntAPPRIS ALT1 TSL 1 (best) BASIC6.59□□□□□ -1.35
HOXC9P31274 ATF7IP2-201ENST00000324570 3396 ntTSL 5 BASIC6.59□□□□□ -1.35
HOXC9P31274 CASC19-201ENST00000500112 5735 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
HOXC9P31274 OR8A1-201ENST00000284287 1146 ntAPPRIS P1 BASIC6.59□□□□□ -1.35
HOXC9P31274 AC012358.3-203ENST00000366287 1110 ntTSL 3 BASIC6.59□□□□□ -1.35
HOXC9P31274 CACYBP-203ENST00000406752 243 ntTSL 5 BASIC6.59□□□□□ -1.35
HOXC9P31274 SLC9B1P4-201ENST00000421957 1288 ntBASIC6.59□□□□□ -1.35
HOXC9P31274 AC046176.1-201ENST00000435260 1170 ntBASIC6.59□□□□□ -1.35
HOXC9P31274 AL365271.1-201ENST00000448909 603 ntTSL 3 BASIC6.59□□□□□ -1.35
Retrieved 100 of 98,524 protein–RNA pairs in 103.5 ms