Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 SATB1-216ENST00000491519 1000 ntTSL 2 BASIC7.25□□□□□ -1.25
LIG1P18858 AC092045.1-201ENST00000495716 1231 ntBASIC7.25□□□□□ -1.25
LIG1P18858 USP17L23-201ENST00000506619 551 ntAPPRIS P1 BASIC7.25□□□□□ -1.25
LIG1P18858 ERAP2-205ENST00000510309 1275 ntTSL 1 (best) BASIC7.25□□□□□ -1.25
LIG1P18858 Y_RNA.695-201ENST00000516715 107 ntBASIC7.25□□□□□ -1.25
LIG1P18858 HIGD1AP18-201ENST00000520730 278 ntBASIC7.25□□□□□ -1.25
LIG1P18858 AC087672.2-201ENST00000522498 429 ntTSL 2 BASIC7.25□□□□□ -1.25
LIG1P18858 AP001775.2-201ENST00000531710 334 ntTSL 2 BASIC7.25□□□□□ -1.25
LIG1P18858 AC078962.4-201ENST00000546135 254 ntTSL 3 BASIC7.25□□□□□ -1.25
LIG1P18858 AL133163.3-201ENST00000556448 504 ntTSL 5 BASIC7.25□□□□□ -1.25
LIG1P18858 AC005726.4-201ENST00000582858 458 ntBASIC7.25□□□□□ -1.25
LIG1P18858 RN7SL475P-201ENST00000583379 298 ntBASIC7.25□□□□□ -1.25
LIG1P18858 AC012254.4-201ENST00000588843 273 ntBASIC7.25□□□□□ -1.25
LIG1P18858 GALNT1-205ENST00000591081 1120 ntTSL 1 (best) BASIC7.25□□□□□ -1.25
LIG1P18858 ZNF66-203ENST00000594534 757 ntTSL 5 BASIC7.25□□□□□ -1.25
LIG1P18858 AC079089.3-201ENST00000603094 673 ntBASIC7.25□□□□□ -1.25
LIG1P18858 CLPTM1LP1-201ENST00000604519 484 ntBASIC7.25□□□□□ -1.25
LIG1P18858 AC080013.4-201ENST00000607624 649 ntBASIC7.25□□□□□ -1.25
LIG1P18858 MIR6889-201ENST00000613185 59 ntBASIC7.25□□□□□ -1.25
LIG1P18858 VN1R74P-201ENST00000613259 503 ntBASIC7.25□□□□□ -1.25
LIG1P18858 AC009878.1-201ENST00000621819 340 ntBASIC7.25□□□□□ -1.25
LIG1P18858 AC089999.3-201ENST00000622440 577 ntBASIC7.25□□□□□ -1.25
LIG1P18858 C3orf85-208ENST00000622536 925 ntAPPRIS P5 TSL 5 BASIC7.25□□□□□ -1.25
LIG1P18858 AC092692.1-201ENST00000623625 2595 ntBASIC7.25□□□□□ -1.25
LIG1P18858 SHQ1P1-201ENST00000437111 1544 ntBASIC7.25□□□□□ -1.25
LIG1P18858 VCAM1-201ENST00000294728 3083 ntAPPRIS P1 TSL 1 (best) BASIC7.25□□□□□ -1.25
LIG1P18858 ZNF337-AS1-201ENST00000414393 4666 ntTSL 2 BASIC7.25□□□□□ -1.25
LIG1P18858 OR1E1-201ENST00000322608 1307 ntAPPRIS P1 BASIC7.25□□□□□ -1.25
LIG1P18858 CNTRL-204ENST00000373847 3372 ntTSL 1 (best) BASIC7.25□□□□□ -1.25
LIG1P18858 PEX5L-202ENST00000392649 8540 ntAPPRIS ALT2 TSL 5 BASIC7.24□□□□□ -1.25
LIG1P18858 UGT2B15-201ENST00000338206 2077 ntAPPRIS P1 TSL 1 (best) BASIC7.24□□□□□ -1.25
LIG1P18858 DOCK9-208ENST00000448493 7887 ntAPPRIS ALT2 TSL 5 BASIC7.24□□□□□ -1.25
LIG1P18858 AC012020.1-201ENST00000624541 1728 ntBASIC7.24□□□□□ -1.25
LIG1P18858 SERPINB7-202ENST00000398019 2203 ntAPPRIS P1 TSL 1 (best) BASIC7.24□□□□□ -1.25
LIG1P18858 EMSY-201ENST00000334736 5508 ntAPPRIS P3 TSL 5 BASIC7.24□□□□□ -1.25
LIG1P18858 AL359976.1-201ENST00000418655 3528 ntBASIC7.24□□□□□ -1.25
LIG1P18858 SPP1-202ENST00000360804 1196 ntTSL 1 (best) BASIC7.24□□□□□ -1.25
LIG1P18858 RNU1-87P-201ENST00000363727 170 ntBASIC7.24□□□□□ -1.25
LIG1P18858 RNU6-1283P-201ENST00000365314 105 ntBASIC7.24□□□□□ -1.25
LIG1P18858 PIGP-205ENST00000399103 656 ntAPPRIS P1 TSL 1 (best) BASIC7.24□□□□□ -1.25
LIG1P18858 AC006960.1-201ENST00000419980 153 ntBASIC7.24□□□□□ -1.25
LIG1P18858 AL035401.1-201ENST00000420572 871 ntTSL 3 BASIC7.24□□□□□ -1.25
LIG1P18858 LINC02263-202ENST00000420701 597 ntTSL 5 BASIC7.24□□□□□ -1.25
LIG1P18858 CENPIP1-201ENST00000425713 902 ntBASIC7.24□□□□□ -1.25
LIG1P18858 RAC1P8-201ENST00000427086 527 ntBASIC7.24□□□□□ -1.25
LIG1P18858 AL645939.3-201ENST00000435408 225 ntBASIC7.24□□□□□ -1.25
LIG1P18858 LINC00328-2P-201ENST00000436585 219 ntBASIC7.24□□□□□ -1.25
LIG1P18858 AL590399.3-201ENST00000438072 543 ntTSL 5 BASIC7.24□□□□□ -1.25
LIG1P18858 AL445623.1-201ENST00000440888 237 ntTSL 3 BASIC7.24□□□□□ -1.25
LIG1P18858 DCN-205ENST00000441303 519 ntTSL 1 (best) BASIC7.24□□□□□ -1.25
LIG1P18858 AL606662.1-201ENST00000445763 553 ntBASIC7.24□□□□□ -1.25
LIG1P18858 AC136489.1-203ENST00000450246 736 ntTSL 5 BASIC7.24□□□□□ -1.25
LIG1P18858 AC115989.1-202ENST00000452153 1150 ntTSL 2 BASIC7.24□□□□□ -1.25
LIG1P18858 AL590652.1-201ENST00000453790 850 ntTSL 3 BASIC7.24□□□□□ -1.25
LIG1P18858 AL844175.1-201ENST00000455153 323 ntTSL 5 BASIC7.24□□□□□ -1.25
LIG1P18858 RPS7P10-201ENST00000464254 603 ntBASIC7.24□□□□□ -1.25
LIG1P18858 SH2D1A-203ENST00000477673 461 ntTSL 2 BASIC7.24□□□□□ -1.25
LIG1P18858 PFN2-209ENST00000481275 560 ntTSL 4 BASIC7.24□□□□□ -1.25
LIG1P18858 MTAPP1-201ENST00000489154 819 ntBASIC7.24□□□□□ -1.25
LIG1P18858 AC106895.1-202ENST00000502956 777 ntTSL 3 BASIC7.24□□□□□ -1.25
LIG1P18858 AC091868.2-201ENST00000506717 556 ntTSL 3 BASIC7.24□□□□□ -1.25
LIG1P18858 AP001208.1-201ENST00000518612 408 ntTSL 3 BASIC7.24□□□□□ -1.25
LIG1P18858 AKIRIN1P1-201ENST00000547384 544 ntBASIC7.24□□□□□ -1.25
LIG1P18858 AC013640.1-201ENST00000565366 565 ntTSL 3 BASIC7.24□□□□□ -1.25
LIG1P18858 MIR3611-201ENST00000584484 83 ntBASIC7.24□□□□□ -1.25
LIG1P18858 LINC01470-205ENST00000584829 681 ntTSL 3 BASIC7.24□□□□□ -1.25
LIG1P18858 AC107982.3-201ENST00000584957 985 ntBASIC7.24□□□□□ -1.25
LIG1P18858 TEX41-218ENST00000596540 882 ntTSL 5 BASIC7.24□□□□□ -1.25
LIG1P18858 NDUFB9P1-201ENST00000604683 510 ntBASIC7.24□□□□□ -1.25
LIG1P18858 AC004223.4-201ENST00000612426 332 ntBASIC7.24□□□□□ -1.25
LIG1P18858 SOX2OT_exon1.1-201ENST00000614902 232 ntBASIC7.24□□□□□ -1.25
LIG1P18858 MALAT1-209ENST00000616691 587 ntTSL 2 BASIC7.24□□□□□ -1.25
LIG1P18858 LAMTOR5-AS1-233ENST00000625451 470 ntTSL 5 BASIC7.24□□□□□ -1.25
LIG1P18858 AC244258.1-201ENST00000637553 1071 ntBASIC7.24□□□□□ -1.25
LIG1P18858 AC073869.7-201ENST00000640874 297 ntBASIC7.24□□□□□ -1.25
LIG1P18858 SV2B-202ENST00000394232 11279 ntAPPRIS P1 TSL 5 BASIC7.24□□□□□ -1.25
LIG1P18858 RNF145-201ENST00000274542 3364 ntTSL 2 BASIC7.24□□□□□ -1.25
LIG1P18858 GRIK2-203ENST00000369134 4185 ntTSL 5 BASIC7.24□□□□□ -1.25
LIG1P18858 INO80D-201ENST00000403263 14136 ntAPPRIS P1 TSL 5 BASIC7.24□□□□□ -1.25
LIG1P18858 AC073544.1-201ENST00000600110 1595 ntBASIC7.24□□□□□ -1.25
LIG1P18858 NSD1-201ENST00000347982 7688 ntTSL 1 (best) BASIC7.24□□□□□ -1.25
LIG1P18858 AC011604.2-201ENST00000381541 2268 ntAPPRIS ALT2 TSL 2 BASIC7.24□□□□□ -1.25
LIG1P18858 TTC41P-203ENST00000548527 1475 ntTSL 5 BASIC7.24□□□□□ -1.25
LIG1P18858 CDH13-209ENST00000567109 8042 ntAPPRIS ALT2 TSL 1 (best) BASIC7.23□□□□□ -1.25
LIG1P18858 FLRT3-202ENST00000378053 4776 ntAPPRIS P1 TSL 1 (best) BASIC7.23□□□□□ -1.25
LIG1P18858 FAM197Y8-201ENST00000426661 2340 ntTSL 2 BASIC7.23□□□□□ -1.25
LIG1P18858 FAM197Y6-202ENST00000442145 2340 ntTSL 2 BASIC7.23□□□□□ -1.25
LIG1P18858 ECT2-216ENST00000540509 4406 ntAPPRIS P2 TSL 5 BASIC7.23□□□□□ -1.25
LIG1P18858 ZNF724-201ENST00000418100 2764 ntAPPRIS P1 TSL 2 BASIC7.23□□□□□ -1.25
LIG1P18858 AC020633.1-201ENST00000468439 2247 ntBASIC7.23□□□□□ -1.25
LIG1P18858 NLRP11-204ENST00000592953 3077 ntTSL 1 (best) BASIC7.23□□□□□ -1.25
LIG1P18858 NOL4-203ENST00000538587 1979 ntTSL 2 BASIC7.23□□□□□ -1.25
LIG1P18858 CEP44-206ENST00000503780 4534 ntAPPRIS P1 TSL 1 (best) BASIC7.23□□□□□ -1.25
LIG1P18858 TAS2R8-201ENST00000240615 1243 ntAPPRIS P1 BASIC7.23□□□□□ -1.25
LIG1P18858 SNORD35A-201ENST00000363389 86 ntBASIC7.23□□□□□ -1.25
LIG1P18858 PPCS-201ENST00000372556 984 ntTSL 2 BASIC7.23□□□□□ -1.25
LIG1P18858 SNORD65-201ENST00000391079 73 ntBASIC7.23□□□□□ -1.25
LIG1P18858 SMARCE1P6-201ENST00000398372 1216 ntBASIC7.23□□□□□ -1.25
LIG1P18858 AL391419.1-201ENST00000398901 1275 ntBASIC7.23□□□□□ -1.25
LIG1P18858 OOSP1-201ENST00000398992 1270 ntBASIC7.23□□□□□ -1.25
Retrieved 100 of 98,524 protein–RNA pairs in 102 ms