Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 LARP7P4-201ENST00000481075 878 ntBASIC5.62□□□□□ -1.51
VPS4AQ9UN37 RN7SL193P-201ENST00000491708 276 ntBASIC5.62□□□□□ -1.51
VPS4AQ9UN37 AC005823.2-201ENST00000505978 650 ntTSL 3 BASIC5.62□□□□□ -1.51
VPS4AQ9UN37 CYCSP22-201ENST00000517555 339 ntBASIC5.62□□□□□ -1.51
VPS4AQ9UN37 AC018541.1-202ENST00000518687 584 ntTSL 4 BASIC5.62□□□□□ -1.51
VPS4AQ9UN37 AP006245.2-201ENST00000522004 300 ntBASIC5.62□□□□□ -1.51
VPS4AQ9UN37 AC021451.1-201ENST00000523498 1129 ntBASIC5.62□□□□□ -1.51
VPS4AQ9UN37 AC090424.1-201ENST00000535243 736 ntBASIC5.62□□□□□ -1.51
VPS4AQ9UN37 C3orf14-207ENST00000542214 768 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
VPS4AQ9UN37 RAD51AP1-213ENST00000544927 787 ntTSL 4 BASIC5.62□□□□□ -1.51
VPS4AQ9UN37 LINC02448-201ENST00000548613 583 ntTSL 2 BASIC5.62□□□□□ -1.51
VPS4AQ9UN37 LINC02394-201ENST00000549140 543 ntTSL 4 BASIC5.62□□□□□ -1.51
VPS4AQ9UN37 LINC02301-201ENST00000553760 773 ntTSL 3 BASIC5.62□□□□□ -1.51
VPS4AQ9UN37 AC092134.1-201ENST00000563690 800 ntTSL 3 BASIC5.62□□□□□ -1.51
VPS4AQ9UN37 AC106734.1-201ENST00000568646 663 ntBASIC5.62□□□□□ -1.51
VPS4AQ9UN37 AC022211.1-201ENST00000579554 717 ntTSL 3 BASIC5.62□□□□□ -1.51
VPS4AQ9UN37 AC005244.1-201ENST00000582566 339 ntBASIC5.62□□□□□ -1.51
VPS4AQ9UN37 AC060780.2-201ENST00000589047 198 ntBASIC5.62□□□□□ -1.51
VPS4AQ9UN37 LINC00907-210ENST00000593316 847 ntTSL 3 BASIC5.62□□□□□ -1.51
VPS4AQ9UN37 Z98949.1-228ENST00000595093 798 ntTSL 5 BASIC5.62□□□□□ -1.51
VPS4AQ9UN37 AP001160.4-201ENST00000596971 382 ntBASIC5.62□□□□□ -1.51
VPS4AQ9UN37 AP002802.2-201ENST00000605877 235 ntBASIC5.62□□□□□ -1.51
VPS4AQ9UN37 AC006946.3-201ENST00000609791 756 ntBASIC5.62□□□□□ -1.51
VPS4AQ9UN37 RNU6-1192P-201ENST00000612197 107 ntBASIC5.62□□□□□ -1.51
VPS4AQ9UN37 RNU6-489P-201ENST00000618289 107 ntBASIC5.62□□□□□ -1.51
VPS4AQ9UN37 AL445670.1-201ENST00000618889 801 ntBASIC5.62□□□□□ -1.51
VPS4AQ9UN37 AL669942.2-201ENST00000620352 697 ntBASIC5.62□□□□□ -1.51
VPS4AQ9UN37 LINC01620-204ENST00000623295 700 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
VPS4AQ9UN37 OR51F1-202ENST00000624103 939 ntAPPRIS ALT1 BASIC5.62□□□□□ -1.51
VPS4AQ9UN37 LINC00850-201ENST00000629221 685 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
VPS4AQ9UN37 AL590396.4-201ENST00000636779 956 ntBASIC5.62□□□□□ -1.51
VPS4AQ9UN37 OR13C3-202ENST00000641090 1108 ntAPPRIS P1 BASIC5.62□□□□□ -1.51
VPS4AQ9UN37 MAPRE2-211ENST00000589699 4080 ntAPPRIS ALT1 TSL 2 BASIC5.62□□□□□ -1.51
VPS4AQ9UN37 ZNF559-201ENST00000317221 2732 ntTSL 2 BASIC5.62□□□□□ -1.51
VPS4AQ9UN37 KMT2D-201ENST00000301067 19419 ntAPPRIS P1 TSL 5 BASIC5.62□□□□□ -1.51
VPS4AQ9UN37 AC092111.2-201ENST00000611627 1414 ntBASIC5.62□□□□□ -1.51
VPS4AQ9UN37 AL355488.2-201ENST00000609909 2850 ntBASIC5.62□□□□□ -1.51
VPS4AQ9UN37 DNM3OS-201ENST00000417354 4358 ntTSL 4 BASIC5.62□□□□□ -1.51
VPS4AQ9UN37 NOSTRIN-207ENST00000445023 1569 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
VPS4AQ9UN37 ALG2-202ENST00000319033 1627 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
VPS4AQ9UN37 RAB30-212ENST00000533486 9929 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
VPS4AQ9UN37 HSPD1P7-201ENST00000447985 1686 ntBASIC5.62□□□□□ -1.51
VPS4AQ9UN37 DBT-202ENST00000370132 10799 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
VPS4AQ9UN37 EPS8-209ENST00000542903 1858 ntTSL 2 BASIC5.62□□□□□ -1.51
VPS4AQ9UN37 CTDSPL2-204ENST00000558966 1895 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
VPS4AQ9UN37 PSG1-201ENST00000244296 2276 ntAPPRIS P3 TSL 1 (best) BASIC5.62□□□□□ -1.51
VPS4AQ9UN37 GABRA1-215ENST00000636573 2262 ntAPPRIS P1 TSL 5 BASIC5.62□□□□□ -1.51
VPS4AQ9UN37 PPP1R9A-206ENST00000433360 5369 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
VPS4AQ9UN37 SLAMF6-202ENST00000368057 2712 ntAPPRIS ALT2 TSL 1 (best) BASIC5.61□□□□□ -1.51
VPS4AQ9UN37 OR8A1-201ENST00000284287 1146 ntAPPRIS P1 BASIC5.61□□□□□ -1.51
VPS4AQ9UN37 ZNF383-201ENST00000352998 6760 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
VPS4AQ9UN37 AC007618.1-201ENST00000366455 732 ntBASIC5.61□□□□□ -1.51
VPS4AQ9UN37 RNU6-207P-201ENST00000384137 107 ntBASIC5.61□□□□□ -1.51
VPS4AQ9UN37 IGKV5-2-201ENST00000390244 408 ntAPPRIS P1 BASIC5.61□□□□□ -1.51
VPS4AQ9UN37 CLDN12-203ENST00000394605 3488 ntAPPRIS P1 TSL 2 BASIC5.61□□□□□ -1.51
VPS4AQ9UN37 MEPE-202ENST00000395102 2123 ntAPPRIS ALT2 TSL 5 BASIC5.61□□□□□ -1.51
VPS4AQ9UN37 RPL11P3-201ENST00000395256 523 ntBASIC5.61□□□□□ -1.51
VPS4AQ9UN37 TOX3-202ENST00000407228 3124 ntAPPRIS ALT2 TSL 2 BASIC5.61□□□□□ -1.51
VPS4AQ9UN37 AC096533.1-201ENST00000411645 353 ntBASIC5.61□□□□□ -1.51
VPS4AQ9UN37 GABRG2-203ENST00000414552 3927 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
VPS4AQ9UN37 METTL15P3-201ENST00000415522 1221 ntBASIC5.61□□□□□ -1.51
VPS4AQ9UN37 NENFP1-201ENST00000419476 466 ntBASIC5.61□□□□□ -1.51
VPS4AQ9UN37 LINC01277-201ENST00000419957 2398 ntTSL 2 BASIC5.61□□□□□ -1.51
VPS4AQ9UN37 PTP4A1P7-201ENST00000423476 514 ntBASIC5.61□□□□□ -1.51
VPS4AQ9UN37 AC115285.1-201ENST00000424879 736 ntBASIC5.61□□□□□ -1.51
VPS4AQ9UN37 PRUNEP1-201ENST00000425846 705 ntBASIC5.61□□□□□ -1.51
VPS4AQ9UN37 RPS7P2-201ENST00000435134 607 ntBASIC5.61□□□□□ -1.51
VPS4AQ9UN37 AL583854.1-201ENST00000438818 613 ntTSL 5 BASIC5.61□□□□□ -1.51
VPS4AQ9UN37 AL663074.2-201ENST00000440621 479 ntBASIC5.61□□□□□ -1.51
VPS4AQ9UN37 LINC01520-201ENST00000441457 1487 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
VPS4AQ9UN37 TRIM60P16-201ENST00000444048 694 ntBASIC5.61□□□□□ -1.51
VPS4AQ9UN37 FTLP8-201ENST00000446770 267 ntBASIC5.61□□□□□ -1.51
VPS4AQ9UN37 MTND6P5-201ENST00000448266 512 ntBASIC5.61□□□□□ -1.51
VPS4AQ9UN37 AC132807.1-201ENST00000449613 458 ntTSL 3 BASIC5.61□□□□□ -1.51
VPS4AQ9UN37 C2orf80-206ENST00000451346 979 ntTSL 5 BASIC5.61□□□□□ -1.51
VPS4AQ9UN37 AC004692.2-201ENST00000457315 355 ntTSL 3 BASIC5.61□□□□□ -1.51
VPS4AQ9UN37 AP006216.2-201ENST00000457746 333 ntTSL 5 BASIC5.61□□□□□ -1.51
VPS4AQ9UN37 RN7SL515P-201ENST00000463999 297 ntBASIC5.61□□□□□ -1.51
VPS4AQ9UN37 LINC02339-201ENST00000472649 752 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
VPS4AQ9UN37 APOPT1-204ENST00000473127 739 ntTSL 3 BASIC5.61□□□□□ -1.51
VPS4AQ9UN37 CBX1P5-201ENST00000475330 559 ntBASIC5.61□□□□□ -1.51
VPS4AQ9UN37 AC020779.1-201ENST00000478757 796 ntBASIC5.61□□□□□ -1.51
VPS4AQ9UN37 RPS3A-204ENST00000506126 862 ntTSL 5 BASIC5.61□□□□□ -1.51
VPS4AQ9UN37 MTND5P11-201ENST00000511037 1812 ntBASIC5.61□□□□□ -1.51
VPS4AQ9UN37 AC114284.1-201ENST00000511422 1114 ntTSL 2 BASIC5.61□□□□□ -1.51
VPS4AQ9UN37 AC133963.2-201ENST00000513686 578 ntBASIC5.61□□□□□ -1.51
VPS4AQ9UN37 AC111000.6-201ENST00000514471 709 ntBASIC5.61□□□□□ -1.51
VPS4AQ9UN37 RFPL4AP3-201ENST00000515267 345 ntBASIC5.61□□□□□ -1.51
VPS4AQ9UN37 AC078899.1-201ENST00000521432 1185 ntBASIC5.61□□□□□ -1.51
VPS4AQ9UN37 HAUS1P3-201ENST00000523909 662 ntBASIC5.61□□□□□ -1.51
VPS4AQ9UN37 LGALS8-217ENST00000525042 903 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
VPS4AQ9UN37 AP000916.1-201ENST00000533869 835 ntBASIC5.61□□□□□ -1.51
VPS4AQ9UN37 GNG2-208ENST00000554875 430 ntTSL 5 BASIC5.61□□□□□ -1.51
VPS4AQ9UN37 AP001007.3-201ENST00000560744 356 ntTSL 5 BASIC5.61□□□□□ -1.51
VPS4AQ9UN37 MIR4700-201ENST00000578311 74 ntBASIC5.61□□□□□ -1.51
VPS4AQ9UN37 LINC02073-202ENST00000592081 535 ntTSL 4 BASIC5.61□□□□□ -1.51
VPS4AQ9UN37 AL158152.1-201ENST00000602652 1435 ntBASIC5.61□□□□□ -1.51
VPS4AQ9UN37 MTCO2P22-201ENST00000603246 681 ntBASIC5.61□□□□□ -1.51
VPS4AQ9UN37 RPP40P2-201ENST00000603596 712 ntBASIC5.61□□□□□ -1.51
VPS4AQ9UN37 AC067838.1-201ENST00000606064 577 ntBASIC5.61□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 107.7 ms