Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 FABP7-202ENST00000368444 1026 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
VPS35Q96QK1 RNU6-171P-201ENST00000384354 107 ntBASIC5.22□□□□□ -1.57
VPS35Q96QK1 NUDT19P3-201ENST00000404698 555 ntBASIC5.22□□□□□ -1.57
VPS35Q96QK1 NPM1P40-201ENST00000412758 733 ntBASIC5.22□□□□□ -1.57
VPS35Q96QK1 AC025946.1-201ENST00000413286 430 ntTSL 3 BASIC5.22□□□□□ -1.57
VPS35Q96QK1 LINC01829-201ENST00000414404 571 ntTSL 2 BASIC5.22□□□□□ -1.57
VPS35Q96QK1 BX510359.3-201ENST00000422168 306 ntBASIC5.22□□□□□ -1.57
VPS35Q96QK1 AC104170.2-201ENST00000424246 678 ntTSL 3 BASIC5.22□□□□□ -1.57
VPS35Q96QK1 TNKS2-AS1-201ENST00000432246 609 ntTSL 2 BASIC5.22□□□□□ -1.57
VPS35Q96QK1 RPL19P16-201ENST00000433839 588 ntBASIC5.22□□□□□ -1.57
VPS35Q96QK1 AC090018.1-201ENST00000434369 367 ntBASIC5.22□□□□□ -1.57
VPS35Q96QK1 AL161722.2-201ENST00000434731 981 ntBASIC5.22□□□□□ -1.57
VPS35Q96QK1 LINC01789-201ENST00000443123 860 ntTSL 5 BASIC5.22□□□□□ -1.57
VPS35Q96QK1 OR6C72P-201ENST00000451403 892 ntBASIC5.22□□□□□ -1.57
VPS35Q96QK1 AL589703.1-201ENST00000456032 256 ntTSL 5 BASIC5.22□□□□□ -1.57
VPS35Q96QK1 AC093827.1-201ENST00000480094 861 ntBASIC5.22□□□□□ -1.57
VPS35Q96QK1 AC098583.1-201ENST00000480875 255 ntBASIC5.22□□□□□ -1.57
VPS35Q96QK1 AC079841.1-201ENST00000481228 950 ntBASIC5.22□□□□□ -1.57
VPS35Q96QK1 RN7SL629P-201ENST00000489622 285 ntBASIC5.22□□□□□ -1.57
VPS35Q96QK1 RPL15P21-201ENST00000495592 567 ntBASIC5.22□□□□□ -1.57
VPS35Q96QK1 IMPA1P1-201ENST00000510718 842 ntBASIC5.22□□□□□ -1.57
VPS35Q96QK1 BAALC-AS1-205ENST00000521102 613 ntTSL 3 BASIC5.22□□□□□ -1.57
VPS35Q96QK1 AL078612.2-201ENST00000525133 646 ntTSL 3 BASIC5.22□□□□□ -1.57
VPS35Q96QK1 AC024940.3-201ENST00000538551 316 ntBASIC5.22□□□□□ -1.57
VPS35Q96QK1 TRDN-205ENST00000546248 1179 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
VPS35Q96QK1 AC008126.1-201ENST00000549019 480 ntBASIC5.22□□□□□ -1.57
VPS35Q96QK1 AC012464.2-201ENST00000551257 779 ntTSL 5 BASIC5.22□□□□□ -1.57
VPS35Q96QK1 AL139022.1-201ENST00000556127 486 ntTSL 5 BASIC5.22□□□□□ -1.57
VPS35Q96QK1 AC055874.1-201ENST00000561458 479 ntTSL 2 BASIC5.22□□□□□ -1.57
VPS35Q96QK1 ZNF227-204ENST00000586228 569 ntTSL 2 BASIC5.22□□□□□ -1.57
VPS35Q96QK1 Metazoa_SRP.170-201ENST00000616060 254 ntBASIC5.22□□□□□ -1.57
VPS35Q96QK1 AC093495.1-217ENST00000627385 428 ntTSL 5 BASIC5.22□□□□□ -1.57
VPS35Q96QK1 LMNTD1-201ENST00000282881 1718 ntAPPRIS P3 TSL 2 BASIC5.22□□□□□ -1.57
VPS35Q96QK1 AL359538.1-201ENST00000453498 1710 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
VPS35Q96QK1 MYO9A-203ENST00000444904 7749 ntAPPRIS P2 TSL 5 BASIC5.22□□□□□ -1.57
VPS35Q96QK1 RXFP1-206ENST00000460056 2735 ntTSL 2 BASIC5.22□□□□□ -1.57
VPS35Q96QK1 CSMD3-204ENST00000455883 12485 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
VPS35Q96QK1 ATF2-201ENST00000264110 4176 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
VPS35Q96QK1 AC023421.1-201ENST00000590535 1785 ntBASIC5.21□□□□□ -1.57
VPS35Q96QK1 RC3H1-202ENST00000367694 3775 ntAPPRIS ALT1 TSL 2 BASIC5.21□□□□□ -1.57
VPS35Q96QK1 DDHD2-202ENST00000517385 4113 ntTSL 2 BASIC5.21□□□□□ -1.57
VPS35Q96QK1 AC004817.4-201ENST00000602396 3625 ntBASIC5.21□□□□□ -1.57
VPS35Q96QK1 PLCB1-210ENST00000612075 6576 ntTSL 5 BASIC5.21□□□□□ -1.58
VPS35Q96QK1 LINC00704-201ENST00000430998 1478 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
VPS35Q96QK1 FAM196B-201ENST00000377365 2999 ntAPPRIS P1 TSL 2 BASIC5.21□□□□□ -1.58
VPS35Q96QK1 Z95331.1-201ENST00000623075 23112 ntBASIC5.21□□□□□ -1.58
VPS35Q96QK1 EPHA3-202ENST00000452448 2546 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
VPS35Q96QK1 CCDC169-202ENST00000239860 716 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
VPS35Q96QK1 TAS2R8-201ENST00000240615 1243 ntAPPRIS P1 BASIC5.21□□□□□ -1.58
VPS35Q96QK1 SNORA17.1-201ENST00000362945 126 ntBASIC5.21□□□□□ -1.58
VPS35Q96QK1 RNA5SP241-201ENST00000391326 114 ntBASIC5.21□□□□□ -1.58
VPS35Q96QK1 OR8V1P-201ENST00000395193 873 ntBASIC5.21□□□□□ -1.58
VPS35Q96QK1 RN7SKP97-201ENST00000410966 333 ntBASIC5.21□□□□□ -1.58
VPS35Q96QK1 RAB9AP4-201ENST00000415230 609 ntBASIC5.21□□□□□ -1.58
VPS35Q96QK1 OR13Z1P-201ENST00000416141 834 ntBASIC5.21□□□□□ -1.58
VPS35Q96QK1 SOS1-IT1-201ENST00000420644 539 ntTSL 5 BASIC5.21□□□□□ -1.58
VPS35Q96QK1 LINC01740-201ENST00000423842 332 ntTSL 2 BASIC5.21□□□□□ -1.58
VPS35Q96QK1 CLUHP1-201ENST00000435012 1190 ntBASIC5.21□□□□□ -1.58
VPS35Q96QK1 AL354863.1-204ENST00000436430 556 ntTSL 3 BASIC5.21□□□□□ -1.58
VPS35Q96QK1 FAR2P1-206ENST00000449736 709 ntBASIC5.21□□□□□ -1.58
VPS35Q96QK1 RN7SL177P-201ENST00000476596 299 ntBASIC5.21□□□□□ -1.58
VPS35Q96QK1 RPL7P41-201ENST00000485823 957 ntBASIC5.21□□□□□ -1.58
VPS35Q96QK1 RN7SL814P-201ENST00000487715 300 ntBASIC5.21□□□□□ -1.58
VPS35Q96QK1 AGGF1P3-201ENST00000493675 1213 ntBASIC5.21□□□□□ -1.58
VPS35Q96QK1 AC072052.1-201ENST00000496556 306 ntBASIC5.21□□□□□ -1.58
VPS35Q96QK1 AC093890.1-201ENST00000502554 540 ntBASIC5.21□□□□□ -1.58
VPS35Q96QK1 HIGD1AP14-201ENST00000507617 282 ntBASIC5.21□□□□□ -1.58
VPS35Q96QK1 GTF2F2P1-201ENST00000511083 675 ntBASIC5.21□□□□□ -1.58
VPS35Q96QK1 AC012400.1-201ENST00000518452 381 ntBASIC5.21□□□□□ -1.58
VPS35Q96QK1 OR4A46P-201ENST00000527255 933 ntBASIC5.21□□□□□ -1.58
VPS35Q96QK1 OR8A2P-201ENST00000528631 952 ntBASIC5.21□□□□□ -1.58
VPS35Q96QK1 LINC01493-201ENST00000530102 460 ntTSL 5 BASIC5.21□□□□□ -1.58
VPS35Q96QK1 AC127381.1-201ENST00000555979 939 ntBASIC5.21□□□□□ -1.58
VPS35Q96QK1 AL121839.1-201ENST00000556233 1185 ntBASIC5.21□□□□□ -1.58
VPS35Q96QK1 AC012409.1-202ENST00000558449 639 ntTSL 2 BASIC5.21□□□□□ -1.58
VPS35Q96QK1 AL390726.5-202ENST00000564800 256 ntBASIC5.21□□□□□ -1.58
VPS35Q96QK1 LINC02168-201ENST00000565327 352 ntTSL 2 BASIC5.21□□□□□ -1.58
VPS35Q96QK1 PDCD6IPP2-207ENST00000566321 1069 ntBASIC5.21□□□□□ -1.58
VPS35Q96QK1 PDE6G-203ENST00000571224 526 ntAPPRIS P1 TSL 5 BASIC5.21□□□□□ -1.58
VPS35Q96QK1 MIR4472-2-201ENST00000582069 67 ntBASIC5.21□□□□□ -1.58
VPS35Q96QK1 SLC14A2-AS1-201ENST00000585759 494 ntTSL 3 BASIC5.21□□□□□ -1.58
VPS35Q96QK1 AC006504.5-201ENST00000588122 655 ntTSL 5 BASIC5.21□□□□□ -1.58
VPS35Q96QK1 AC097376.2-202ENST00000608345 433 ntTSL 3 BASIC5.21□□□□□ -1.58
VPS35Q96QK1 Metazoa_SRP.179-201ENST00000619020 241 ntBASIC5.21□□□□□ -1.58
VPS35Q96QK1 MIR6839-201ENST00000620425 113 ntBASIC5.21□□□□□ -1.58
VPS35Q96QK1 XKR4-201ENST00000327381 19880 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
VPS35Q96QK1 EEF1A1-210ENST00000610520 3447 ntTSL 5 BASIC5.21□□□□□ -1.58
VPS35Q96QK1 LINC01847-202ENST00000523311 1762 ntTSL 5 BASIC5.21□□□□□ -1.58
VPS35Q96QK1 AC133552.1-201ENST00000569988 4007 ntBASIC5.21□□□□□ -1.58
VPS35Q96QK1 CNTN5-201ENST00000279463 5925 ntTSL 5 BASIC5.21□□□□□ -1.58
VPS35Q96QK1 AGO3-203ENST00000373191 19687 ntAPPRIS P1 TSL 2 BASIC5.21□□□□□ -1.58
VPS35Q96QK1 AC123767.1-201ENST00000519537 1439 ntTSL 5 BASIC5.21□□□□□ -1.58
VPS35Q96QK1 RARSP1-201ENST00000542842 1418 ntBASIC5.21□□□□□ -1.58
VPS35Q96QK1 GOLPH3L-201ENST00000271732 2999 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
VPS35Q96QK1 CEP295-206ENST00000531700 2890 ntAPPRIS ALT2 TSL 2 BASIC5.21□□□□□ -1.58
VPS35Q96QK1 LINC02355-201ENST00000503100 2520 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
VPS35Q96QK1 EIF3M-208ENST00000531120 5051 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
VPS35Q96QK1 VWC2L-202ENST00000427124 4480 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
VPS35Q96QK1 ZNF733P-202ENST00000444809 1573 ntBASIC5.21□□□□□ -1.58
VPS35Q96QK1 RAB18-209ENST00000621805 4894 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 72.1 ms