Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 AC015912.1-201ENST00000574826 538 ntTSL 3 BASIC5.3□□□□□ -1.56
VPS39Q96JC1 AC022884.2-201ENST00000578535 580 ntBASIC5.3□□□□□ -1.56
VPS39Q96JC1 AC097467.3-209ENST00000595760 615 ntTSL 5 BASIC5.3□□□□□ -1.56
VPS39Q96JC1 AC010463.2-201ENST00000597592 661 ntTSL 5 BASIC5.3□□□□□ -1.56
VPS39Q96JC1 AC010998.2-201ENST00000605549 625 ntTSL 5 BASIC5.3□□□□□ -1.56
VPS39Q96JC1 AC015982.1-201ENST00000608113 465 ntBASIC5.3□□□□□ -1.56
VPS39Q96JC1 AP001962.1-201ENST00000624114 559 ntBASIC5.3□□□□□ -1.56
VPS39Q96JC1 CD80-204ENST00000478182 1491 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
VPS39Q96JC1 BBX-206ENST00000415149 8930 ntAPPRIS P3 TSL 1 (best) BASIC5.3□□□□□ -1.56
VPS39Q96JC1 MAP3K2-201ENST00000344908 2135 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
VPS39Q96JC1 MOXD1-201ENST00000336749 2950 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
VPS39Q96JC1 OR10K1-203ENST00000641432 3775 ntAPPRIS P1 BASIC5.3□□□□□ -1.56
VPS39Q96JC1 AC011755.1-201ENST00000623763 2049 ntBASIC5.3□□□□□ -1.56
VPS39Q96JC1 ATF7IP-214ENST00000540793 4142 ntAPPRIS P3 TSL 1 (best) BASIC5.29□□□□□ -1.56
VPS39Q96JC1 SCARNA15-201ENST00000607520 4325 ntBASIC5.29□□□□□ -1.56
VPS39Q96JC1 AFTPH-204ENST00000409933 2811 ntAPPRIS ALT1 TSL 1 (best) BASIC5.29□□□□□ -1.56
VPS39Q96JC1 CLHC1-203ENST00000406076 1777 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
VPS39Q96JC1 LGALS8-222ENST00000527974 1349 ntAPPRIS P4 TSL 5 BASIC5.29□□□□□ -1.56
VPS39Q96JC1 DCX-202ENST00000358070 9405 ntAPPRIS ALT1 TSL 1 (best) BASIC5.29□□□□□ -1.56
VPS39Q96JC1 AC073136.1-201ENST00000449426 2884 ntBASIC5.29□□□□□ -1.56
VPS39Q96JC1 PPP2R2A-201ENST00000315985 1878 ntAPPRIS ALT1 TSL 2 BASIC5.29□□□□□ -1.56
VPS39Q96JC1 GHR-210ENST00000615111 4814 ntAPPRIS P1 TSL 5 BASIC5.29□□□□□ -1.56
VPS39Q96JC1 MIR133B-201ENST00000362210 119 ntBASIC5.29□□□□□ -1.56
VPS39Q96JC1 SPATA42-201ENST00000369989 535 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
VPS39Q96JC1 MIR589-201ENST00000385238 99 ntBASIC5.29□□□□□ -1.56
VPS39Q96JC1 CAPSL-201ENST00000397366 969 ntAPPRIS P1 TSL 3 BASIC5.29□□□□□ -1.56
VPS39Q96JC1 RNA5SP487-201ENST00000410186 122 ntBASIC5.29□□□□□ -1.56
VPS39Q96JC1 GABARAPL3-201ENST00000412799 354 ntBASIC5.29□□□□□ -1.56
VPS39Q96JC1 AC013472.2-201ENST00000416226 306 ntTSL 3 BASIC5.29□□□□□ -1.56
VPS39Q96JC1 AC092687.1-201ENST00000418835 389 ntTSL 3 BASIC5.29□□□□□ -1.56
VPS39Q96JC1 RPS29P14-201ENST00000431518 171 ntBASIC5.29□□□□□ -1.56
VPS39Q96JC1 GAPDHP58-201ENST00000438477 1006 ntBASIC5.29□□□□□ -1.56
VPS39Q96JC1 AF064858.2-201ENST00000440714 292 ntTSL 3 BASIC5.29□□□□□ -1.56
VPS39Q96JC1 RPL31P15-201ENST00000449770 338 ntBASIC5.29□□□□□ -1.56
VPS39Q96JC1 AP001439.1-201ENST00000455275 392 ntTSL 2 BASIC5.29□□□□□ -1.56
VPS39Q96JC1 RPS4XP12-201ENST00000461747 709 ntBASIC5.29□□□□□ -1.56
VPS39Q96JC1 RN7SL423P-201ENST00000486202 304 ntBASIC5.29□□□□□ -1.56
VPS39Q96JC1 AK4P6-201ENST00000505168 528 ntBASIC5.29□□□□□ -1.56
VPS39Q96JC1 MYLK-AS2-201ENST00000510827 500 ntTSL 3 BASIC5.29□□□□□ -1.56
VPS39Q96JC1 RNA5SP228-201ENST00000516232 133 ntBASIC5.29□□□□□ -1.56
VPS39Q96JC1 AC112191.2-201ENST00000522428 333 ntBASIC5.29□□□□□ -1.56
VPS39Q96JC1 AC100784.1-201ENST00000522790 310 ntBASIC5.29□□□□□ -1.56
VPS39Q96JC1 AC008250.1-201ENST00000539874 522 ntTSL 3 BASIC5.29□□□□□ -1.56
VPS39Q96JC1 SNHG1-218ENST00000541615 748 ntTSL 5 BASIC5.29□□□□□ -1.56
VPS39Q96JC1 AL355076.2-201ENST00000555736 544 ntTSL 5 BASIC5.29□□□□□ -1.56
VPS39Q96JC1 AC012409.1-202ENST00000558449 639 ntTSL 2 BASIC5.29□□□□□ -1.56
VPS39Q96JC1 AC005670.2-201ENST00000571841 889 ntAPPRIS P1 TSL 5 BASIC5.29□□□□□ -1.56
VPS39Q96JC1 AC127024.5-201ENST00000580085 462 ntBASIC5.29□□□□□ -1.56
VPS39Q96JC1 AL157938.2-202ENST00000588378 875 ntTSL 5 BASIC5.29□□□□□ -1.56
VPS39Q96JC1 AC008521.2-201ENST00000591021 259 ntBASIC5.29□□□□□ -1.56
VPS39Q96JC1 FAM60CP-201ENST00000591086 664 ntBASIC5.29□□□□□ -1.56
VPS39Q96JC1 AC009597.2-201ENST00000604659 592 ntBASIC5.29□□□□□ -1.56
VPS39Q96JC1 AC011626.1-201ENST00000604710 562 ntBASIC5.29□□□□□ -1.56
VPS39Q96JC1 ASNSD1-208ENST00000607690 535 ntTSL 2 BASIC5.29□□□□□ -1.56
VPS39Q96JC1 ASNSD1-209ENST00000607829 581 ntTSL 2 BASIC5.29□□□□□ -1.56
VPS39Q96JC1 LINC02109-206ENST00000629527 854 ntTSL 5 BASIC5.29□□□□□ -1.56
VPS39Q96JC1 DMTF1-204ENST00000413276 3548 ntTSL 5 BASIC5.29□□□□□ -1.56
VPS39Q96JC1 MYBPC1-205ENST00000536007 3512 ntAPPRIS ALT2 TSL 1 (best) BASIC5.29□□□□□ -1.56
VPS39Q96JC1 MYBPC1-206ENST00000541119 3533 ntAPPRIS ALT2 TSL 1 (best) BASIC5.29□□□□□ -1.56
VPS39Q96JC1 GABPB1-204ENST00000396464 1401 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
VPS39Q96JC1 AC023421.1-201ENST00000590535 1785 ntBASIC5.29□□□□□ -1.56
VPS39Q96JC1 NUCB2-220ENST00000622082 1369 ntAPPRIS P2 TSL 5 BASIC5.29□□□□□ -1.56
VPS39Q96JC1 AL445623.2-201ENST00000640307 4805 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
VPS39Q96JC1 GABRG2-224ENST00000640574 3150 ntTSL 5 BASIC5.28□□□□□ -1.56
VPS39Q96JC1 AJ009632.2-202ENST00000634644 1513 ntTSL 5 BASIC5.28□□□□□ -1.56
VPS39Q96JC1 ZNF143-201ENST00000299606 2562 ntTSL 5 BASIC5.28□□□□□ -1.56
VPS39Q96JC1 CFH-206ENST00000630130 1658 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
VPS39Q96JC1 PGM3-211ENST00000512866 2013 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
VPS39Q96JC1 RASAL2-203ENST00000462775 14453 ntAPPRIS ALT2 TSL 1 (best) BASIC5.28□□□□□ -1.56
VPS39Q96JC1 AC105411.1-201ENST00000568776 1470 ntTSL 4 BASIC5.28□□□□□ -1.56
VPS39Q96JC1 HELLS-204ENST00000371332 2675 ntTSL 5 BASIC5.28□□□□□ -1.56
VPS39Q96JC1 AC005294.1-201ENST00000355509 281 ntBASIC5.28□□□□□ -1.56
VPS39Q96JC1 RNU4-44P-201ENST00000363050 141 ntBASIC5.28□□□□□ -1.56
VPS39Q96JC1 SMARCA2-207ENST00000382186 955 ntTSL 3 BASIC5.28□□□□□ -1.56
VPS39Q96JC1 CEACAM7-202ENST00000401731 1236 ntAPPRIS P1 TSL 2 BASIC5.28□□□□□ -1.56
VPS39Q96JC1 AL133388.1-201ENST00000404509 287 ntBASIC5.28□□□□□ -1.56
VPS39Q96JC1 NCSTNP1-201ENST00000406229 144 ntBASIC5.28□□□□□ -1.56
VPS39Q96JC1 TRIM60P17-201ENST00000415181 719 ntBASIC5.28□□□□□ -1.56
VPS39Q96JC1 PPP2R2DP1-201ENST00000420526 637 ntBASIC5.28□□□□□ -1.56
VPS39Q96JC1 AL355994.1-201ENST00000424379 260 ntBASIC5.28□□□□□ -1.56
VPS39Q96JC1 ARPP21-215ENST00000432682 1015 ntTSL 5 BASIC5.28□□□□□ -1.56
VPS39Q96JC1 VAV3-AS1-201ENST00000438318 619 ntTSL 2 BASIC5.28□□□□□ -1.56
VPS39Q96JC1 AC064862.4-201ENST00000442180 334 ntBASIC5.28□□□□□ -1.56
VPS39Q96JC1 CASP3P1-201ENST00000446037 609 ntBASIC5.28□□□□□ -1.56
VPS39Q96JC1 AC099063.2-201ENST00000446360 662 ntBASIC5.28□□□□□ -1.56
VPS39Q96JC1 AC144530.1-201ENST00000452862 555 ntBASIC5.28□□□□□ -1.56
VPS39Q96JC1 AC073486.1-202ENST00000458437 489 ntTSL 3 BASIC5.28□□□□□ -1.56
VPS39Q96JC1 AC245028.2-201ENST00000458673 253 ntBASIC5.28□□□□□ -1.56
VPS39Q96JC1 AC021660.1-201ENST00000465006 554 ntBASIC5.28□□□□□ -1.56
VPS39Q96JC1 CRNDE-201ENST00000501177 614 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
VPS39Q96JC1 ENPP7P11-201ENST00000505915 627 ntBASIC5.28□□□□□ -1.56
VPS39Q96JC1 AP003696.1-201ENST00000519337 770 ntTSL 3 BASIC5.28□□□□□ -1.56
VPS39Q96JC1 TBCA-207ENST00000520039 157 ntTSL 3 BASIC5.28□□□□□ -1.56
VPS39Q96JC1 LINC00944-202ENST00000540684 888 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
VPS39Q96JC1 AC079866.2-201ENST00000541870 515 ntTSL 3 BASIC5.28□□□□□ -1.56
VPS39Q96JC1 AC006349.1-201ENST00000555526 235 ntBASIC5.28□□□□□ -1.56
VPS39Q96JC1 AC010618.3-202ENST00000598141 476 ntTSL 3 BASIC5.28□□□□□ -1.56
VPS39Q96JC1 AC000068.2-201ENST00000608816 460 ntBASIC5.28□□□□□ -1.56
VPS39Q96JC1 AC244131.2-201ENST00000612592 512 ntTSL 3 BASIC5.28□□□□□ -1.56
VPS39Q96JC1 MILR1-204ENST00000616498 747 ntAPPRIS ALT2 TSL 1 (best) BASIC5.28□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 100.4 ms