Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 AL078621.3-201ENST00000623707 2042 ntBASIC5.72□□□□□ -1.49
USP41Q3LFD5 LINC01677-205ENST00000635636 2362 ntTSL 5 BASIC5.72□□□□□ -1.49
USP41Q3LFD5 SAMD9L-204ENST00000437805 5757 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
USP41Q3LFD5 CNOT6LP1-201ENST00000559681 1462 ntBASIC5.72□□□□□ -1.49
USP41Q3LFD5 PSG1-201ENST00000244296 2276 ntAPPRIS P3 TSL 1 (best) BASIC5.72□□□□□ -1.49
USP41Q3LFD5 GYPA-212ENST00000616983 2538 ntAPPRIS ALT2 TSL 5 BASIC5.72□□□□□ -1.49
USP41Q3LFD5 CYP3A43-204ENST00000354829 1709 ntAPPRIS ALT1 TSL 1 (best) BASIC5.72□□□□□ -1.49
USP41Q3LFD5 IFRD1-217ENST00000621379 3232 ntTSL 2 BASIC5.72□□□□□ -1.49
USP41Q3LFD5 PCDH15-215ENST00000409834 5401 ntTSL 5 BASIC5.72□□□□□ -1.49
USP41Q3LFD5 MIR365B-201ENST00000362317 111 ntBASIC5.72□□□□□ -1.49
USP41Q3LFD5 Y_RNA.110-201ENST00000363220 99 ntBASIC5.72□□□□□ -1.49
USP41Q3LFD5 DNAJA1P4-201ENST00000406473 1166 ntBASIC5.72□□□□□ -1.49
USP41Q3LFD5 AMZ2P2-201ENST00000406819 1057 ntBASIC5.72□□□□□ -1.49
USP41Q3LFD5 AC211486.3-201ENST00000412694 621 ntBASIC5.72□□□□□ -1.49
USP41Q3LFD5 AL356968.2-201ENST00000412769 1257 ntBASIC5.72□□□□□ -1.49
USP41Q3LFD5 AF064860.1-201ENST00000416555 544 ntTSL 3 BASIC5.72□□□□□ -1.49
USP41Q3LFD5 MTND4LP14-201ENST00000429447 288 ntBASIC5.72□□□□□ -1.49
USP41Q3LFD5 RPS23P9-201ENST00000448848 438 ntBASIC5.72□□□□□ -1.49
USP41Q3LFD5 EIF4EBP2P1-201ENST00000450009 343 ntBASIC5.72□□□□□ -1.49
USP41Q3LFD5 AC099344.3-201ENST00000454489 626 ntTSL 3 BASIC5.72□□□□□ -1.49
USP41Q3LFD5 AC018742.1-202ENST00000457901 504 ntTSL 3 BASIC5.72□□□□□ -1.49
USP41Q3LFD5 AC022336.1-201ENST00000475510 337 ntBASIC5.72□□□□□ -1.49
USP41Q3LFD5 AC010245.1-201ENST00000511329 754 ntTSL 3 BASIC5.72□□□□□ -1.49
USP41Q3LFD5 SETP12-201ENST00000514068 805 ntBASIC5.72□□□□□ -1.49
USP41Q3LFD5 RNA5SP373-201ENST00000517271 95 ntBASIC5.72□□□□□ -1.49
USP41Q3LFD5 MTND1P36-201ENST00000522384 936 ntBASIC5.72□□□□□ -1.49
USP41Q3LFD5 ETFRF1-202ENST00000553788 708 ntTSL 3 BASIC5.72□□□□□ -1.49
USP41Q3LFD5 OR4C13-201ENST00000555099 1029 ntAPPRIS P1 BASIC5.72□□□□□ -1.49
USP41Q3LFD5 AL139021.2-201ENST00000556390 399 ntTSL 3 BASIC5.72□□□□□ -1.49
USP41Q3LFD5 LINC00557-201ENST00000563184 1279 ntBASIC5.72□□□□□ -1.49
USP41Q3LFD5 AC090079.2-201ENST00000575289 768 ntBASIC5.72□□□□□ -1.49
USP41Q3LFD5 AP002884.5-201ENST00000595053 1132 ntBASIC5.72□□□□□ -1.49
USP41Q3LFD5 TMSB15B-207ENST00000598087 947 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
USP41Q3LFD5 AC040174.2-201ENST00000602701 465 ntBASIC5.72□□□□□ -1.49
USP41Q3LFD5 OR51C1P-201ENST00000608504 942 ntBASIC5.72□□□□□ -1.49
USP41Q3LFD5 AC074276.2-201ENST00000619891 348 ntBASIC5.72□□□□□ -1.49
USP41Q3LFD5 AC080188.3-201ENST00000624842 748 ntBASIC5.72□□□□□ -1.49
USP41Q3LFD5 DUXB-201ENST00000633875 1079 ntAPPRIS P1 TSL 3 BASIC5.72□□□□□ -1.49
USP41Q3LFD5 AC073869.8-201ENST00000641806 335 ntBASIC5.72□□□□□ -1.49
USP41Q3LFD5 LINS1-214ENST00000561308 1612 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
USP41Q3LFD5 ZNF383-201ENST00000352998 6760 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
USP41Q3LFD5 LRRC49-223ENST00000560369 2586 ntAPPRIS ALT1 TSL 2 BASIC5.72□□□□□ -1.49
USP41Q3LFD5 ASB14-201ENST00000389601 3175 ntAPPRIS ALT2 TSL 5 BASIC5.72□□□□□ -1.49
USP41Q3LFD5 PCDH11X-202ENST00000361655 4126 ntAPPRIS ALT2 TSL 1 (best) BASIC5.72□□□□□ -1.49
USP41Q3LFD5 AASDH-201ENST00000205214 3590 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
USP41Q3LFD5 RNF32-203ENST00000392741 2260 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
USP41Q3LFD5 KBTBD8-201ENST00000417314 4680 ntAPPRIS P1 TSL 2 BASIC5.72□□□□□ -1.49
USP41Q3LFD5 LINC01541-202ENST00000568095 3105 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
USP41Q3LFD5 LINC00598-206ENST00000615947 3541 ntTSL 4 BASIC5.71□□□□□ -1.49
USP41Q3LFD5 SCN1A-209ENST00000635750 8299 ntAPPRIS P3 TSL 5 BASIC5.71□□□□□ -1.49
USP41Q3LFD5 SLC28A3-201ENST00000376238 4887 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.49
USP41Q3LFD5 AP001029.2-203ENST00000589795 4910 ntBASIC5.71□□□□□ -1.49
USP41Q3LFD5 C12orf50-201ENST00000298699 1722 ntAPPRIS P1 TSL 2 BASIC5.71□□□□□ -1.49
USP41Q3LFD5 AL359538.1-201ENST00000453498 1710 ntTSL 1 (best) BASIC5.71□□□□□ -1.49
USP41Q3LFD5 ABI2-204ENST00000295851 22209 ntTSL 1 (best) BASIC5.71□□□□□ -1.49
USP41Q3LFD5 AC112255.1-201ENST00000624070 2493 ntBASIC5.71□□□□□ -1.49
USP41Q3LFD5 SLFN5-201ENST00000299977 10591 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.49
USP41Q3LFD5 OR4C11-201ENST00000302231 1045 ntAPPRIS P1 BASIC5.71□□□□□ -1.5
USP41Q3LFD5 FAS-203ENST00000355279 983 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
USP41Q3LFD5 RN7SKP185-201ENST00000362813 326 ntBASIC5.71□□□□□ -1.5
USP41Q3LFD5 LIX1L-AS1-201ENST00000366105 377 ntTSL 5 BASIC5.71□□□□□ -1.5
USP41Q3LFD5 OR6K3-202ENST00000368146 996 ntBASIC5.71□□□□□ -1.5
USP41Q3LFD5 MIR105-1-201ENST00000385222 81 ntBASIC5.71□□□□□ -1.5
USP41Q3LFD5 MTERF4-204ENST00000406593 802 ntTSL 2 BASIC5.71□□□□□ -1.5
USP41Q3LFD5 UBE2V1P15-201ENST00000407776 448 ntBASIC5.71□□□□□ -1.5
USP41Q3LFD5 RN7SKP126-201ENST00000411143 300 ntBASIC5.71□□□□□ -1.5
USP41Q3LFD5 CYP3A43-205ENST00000415413 990 ntTSL 5 BASIC5.71□□□□□ -1.5
USP41Q3LFD5 RPL17P35-201ENST00000432217 549 ntBASIC5.71□□□□□ -1.5
USP41Q3LFD5 PSMD10P3-201ENST00000437000 448 ntBASIC5.71□□□□□ -1.5
USP41Q3LFD5 AL512625.3-204ENST00000438699 1031 ntTSL 5 BASIC5.71□□□□□ -1.5
USP41Q3LFD5 AL772161.1-201ENST00000439130 476 ntBASIC5.71□□□□□ -1.5
USP41Q3LFD5 AC023271.1-201ENST00000445936 1090 ntBASIC5.71□□□□□ -1.5
USP41Q3LFD5 RPL7P61-201ENST00000451721 751 ntBASIC5.71□□□□□ -1.5
USP41Q3LFD5 Z92846.1-201ENST00000456203 268 ntBASIC5.71□□□□□ -1.5
USP41Q3LFD5 LINC01436-201ENST00000457157 1048 ntTSL 2 BASIC5.71□□□□□ -1.5
USP41Q3LFD5 PSAT1P4-201ENST00000466500 526 ntBASIC5.71□□□□□ -1.5
USP41Q3LFD5 PCNAP1-201ENST00000505363 709 ntBASIC5.71□□□□□ -1.5
USP41Q3LFD5 AC098829.1-202ENST00000513384 537 ntTSL 3 BASIC5.71□□□□□ -1.5
USP41Q3LFD5 AC111000.6-201ENST00000514471 709 ntBASIC5.71□□□□□ -1.5
USP41Q3LFD5 RNU6ATAC24P-201ENST00000516811 135 ntBASIC5.71□□□□□ -1.5
USP41Q3LFD5 LINC01609-202ENST00000522778 566 ntTSL 2 BASIC5.71□□□□□ -1.5
USP41Q3LFD5 OR5D15P-201ENST00000531671 942 ntBASIC5.71□□□□□ -1.5
USP41Q3LFD5 AC034102.2-201ENST00000548861 489 ntAPPRIS P1 TSL 5 BASIC5.71□□□□□ -1.5
USP41Q3LFD5 AC066613.1-202ENST00000560727 630 ntTSL 5 BASIC5.71□□□□□ -1.5
USP41Q3LFD5 AC010551.2-201ENST00000569200 416 ntTSL 3 BASIC5.71□□□□□ -1.5
USP41Q3LFD5 AC016839.1-201ENST00000578162 867 ntBASIC5.71□□□□□ -1.5
USP41Q3LFD5 AC011447.4-201ENST00000587562 111 ntBASIC5.71□□□□□ -1.5
USP41Q3LFD5 OR4H6P-202ENST00000603819 340 ntBASIC5.71□□□□□ -1.5
USP41Q3LFD5 INTS6-AS1-226ENST00000610018 672 ntTSL 5 BASIC5.71□□□□□ -1.5
USP41Q3LFD5 AL136295.6-201ENST00000610486 658 ntBASIC5.71□□□□□ -1.5
USP41Q3LFD5 AL356490.1-201ENST00000623079 479 ntBASIC5.71□□□□□ -1.5
USP41Q3LFD5 AC020978.9-201ENST00000624380 1141 ntBASIC5.71□□□□□ -1.5
USP41Q3LFD5 MYOCOS-202ENST00000636788 1039 ntAPPRIS ALT2 TSL 5 BASIC5.71□□□□□ -1.5
USP41Q3LFD5 GAPVD1-206ENST00000394104 6737 ntTSL 2 BASIC5.71□□□□□ -1.5
USP41Q3LFD5 AC098798.1-201ENST00000503998 1447 ntTSL 5 BASIC5.71□□□□□ -1.5
USP41Q3LFD5 AC004784.1-201ENST00000635495 1833 ntTSL 5 BASIC5.71□□□□□ -1.5
USP41Q3LFD5 KCNH5-201ENST00000322893 11290 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
USP41Q3LFD5 PDE7A-201ENST00000379419 2425 ntAPPRIS P3 TSL 2 BASIC5.7□□□□□ -1.5
USP41Q3LFD5 ACSL5-202ENST00000354655 3351 ntAPPRIS P1 TSL 2 BASIC5.7□□□□□ -1.5
USP41Q3LFD5 GHR-211ENST00000618088 4491 ntAPPRIS P1 TSL 5 BASIC5.7□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 104.9 ms