Protein–RNA interactions for Protein: Q12946

FOXF1, Forkhead box protein F1, humanhuman

Predictions only

Length 379 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXF1Q12946 OR2T7-202ENST00000641557 3409 ntAPPRIS P1 BASIC4.58□□□□□ -1.68
FOXF1Q12946 EIF4EBP2-201ENST00000373218 7257 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
FOXF1Q12946 RIF1-203ENST00000428287 7722 ntAPPRIS ALT2 TSL 1 (best) BASIC4.57□□□□□ -1.68
FOXF1Q12946 FILIP1-201ENST00000237172 4580 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
FOXF1Q12946 GOLPH3L-201ENST00000271732 2999 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
FOXF1Q12946 TEX11-201ENST00000344304 2977 ntAPPRIS P3 TSL 5 BASIC4.57□□□□□ -1.68
FOXF1Q12946 TCP1P3-201ENST00000414406 1498 ntBASIC4.57□□□□□ -1.68
FOXF1Q12946 EEF1A1P36-201ENST00000427807 1351 ntBASIC4.57□□□□□ -1.68
FOXF1Q12946 C9orf135-AS1-201ENST00000439418 1375 ntTSL 2 BASIC4.57□□□□□ -1.68
FOXF1Q12946 LINC00616-205ENST00000514600 2017 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
FOXF1Q12946 MED23-203ENST00000368058 4576 ntTSL 5 BASIC4.57□□□□□ -1.68
FOXF1Q12946 PTPRC-209ENST00000442510 5164 ntAPPRIS P4 TSL 1 (best) BASIC4.57□□□□□ -1.68
FOXF1Q12946 LRRC53-201ENST00000294635 3859 ntAPPRIS P1 TSL 5 BASIC4.57□□□□□ -1.68
FOXF1Q12946 AC005522.1-201ENST00000395416 346 ntBASIC4.57□□□□□ -1.68
FOXF1Q12946 RNF212B-201ENST00000399905 1071 ntTSL 5 BASIC4.57□□□□□ -1.68
FOXF1Q12946 NPM1P38-201ENST00000403835 865 ntBASIC4.57□□□□□ -1.68
FOXF1Q12946 AL592078.1-201ENST00000421866 321 ntTSL 3 BASIC4.57□□□□□ -1.68
FOXF1Q12946 AL139819.1-201ENST00000429420 471 ntTSL 3 BASIC4.57□□□□□ -1.68
FOXF1Q12946 AC007556.1-201ENST00000432133 307 ntTSL 2 BASIC4.57□□□□□ -1.68
FOXF1Q12946 AL450384.1-201ENST00000433526 413 ntTSL 2 BASIC4.57□□□□□ -1.68
FOXF1Q12946 AL355357.1-201ENST00000433531 417 ntTSL 2 BASIC4.57□□□□□ -1.68
FOXF1Q12946 AL627308.1-201ENST00000435693 821 ntBASIC4.57□□□□□ -1.68
FOXF1Q12946 AC004824.1-201ENST00000439577 311 ntTSL 5 BASIC4.57□□□□□ -1.68
FOXF1Q12946 RPS29P9-201ENST00000440360 171 ntBASIC4.57□□□□□ -1.68
FOXF1Q12946 TXNP5-201ENST00000441043 315 ntBASIC4.57□□□□□ -1.68
FOXF1Q12946 TCEA1P3-201ENST00000443005 880 ntBASIC4.57□□□□□ -1.68
FOXF1Q12946 RPL7AP61-201ENST00000443410 636 ntBASIC4.57□□□□□ -1.68
FOXF1Q12946 TAS2R39-201ENST00000446620 1017 ntAPPRIS P1 BASIC4.57□□□□□ -1.68
FOXF1Q12946 AL138767.2-201ENST00000446794 168 ntTSL 3 BASIC4.57□□□□□ -1.68
FOXF1Q12946 AC004980.3-201ENST00000447046 365 ntBASIC4.57□□□□□ -1.68
FOXF1Q12946 AC003991.1-205ENST00000447758 625 ntTSL 5 BASIC4.57□□□□□ -1.68
FOXF1Q12946 AC073850.1-201ENST00000449243 255 ntBASIC4.57□□□□□ -1.68
FOXF1Q12946 AP001439.1-201ENST00000455275 392 ntTSL 2 BASIC4.57□□□□□ -1.68
FOXF1Q12946 AC026348.1-201ENST00000462549 1053 ntBASIC4.57□□□□□ -1.68
FOXF1Q12946 SSR3-206ENST00000476217 807 ntTSL 3 BASIC4.57□□□□□ -1.68
FOXF1Q12946 RN7SL214P-201ENST00000487317 265 ntBASIC4.57□□□□□ -1.68
FOXF1Q12946 AC024132.2-201ENST00000506878 482 ntTSL 3 BASIC4.57□□□□□ -1.68
FOXF1Q12946 COX6B1P5-201ENST00000509843 249 ntBASIC4.57□□□□□ -1.68
FOXF1Q12946 RN7SKP147-201ENST00000517154 244 ntBASIC4.57□□□□□ -1.68
FOXF1Q12946 AC062004.1-201ENST00000518706 686 ntTSL 3 BASIC4.57□□□□□ -1.68
FOXF1Q12946 AC012339.2-201ENST00000523996 453 ntBASIC4.57□□□□□ -1.68
FOXF1Q12946 OR7E128P-201ENST00000532736 1024 ntBASIC4.57□□□□□ -1.68
FOXF1Q12946 C14orf105-210ENST00000534126 1030 ntAPPRIS ALT1 TSL 1 (best) BASIC4.57□□□□□ -1.68
FOXF1Q12946 AC137590.1-201ENST00000542422 495 ntTSL 3 BASIC4.57□□□□□ -1.68
FOXF1Q12946 LINC01489-201ENST00000542689 605 ntTSL 5 BASIC4.57□□□□□ -1.68
FOXF1Q12946 AC025263.2-201ENST00000550437 548 ntAPPRIS P1 TSL 5 BASIC4.57□□□□□ -1.68
FOXF1Q12946 HMGN2P6-201ENST00000551091 273 ntBASIC4.57□□□□□ -1.68
FOXF1Q12946 AC010551.2-201ENST00000569200 416 ntTSL 3 BASIC4.57□□□□□ -1.68
FOXF1Q12946 AP005059.1-201ENST00000578391 456 ntTSL 2 BASIC4.57□□□□□ -1.68
FOXF1Q12946 MIR4691-201ENST00000583764 85 ntBASIC4.57□□□□□ -1.68
FOXF1Q12946 EIF1P5-201ENST00000585002 234 ntBASIC4.57□□□□□ -1.68
FOXF1Q12946 AC093799.2-201ENST00000610062 578 ntBASIC4.57□□□□□ -1.68
FOXF1Q12946 FAT3-201ENST00000409404 19030 ntAPPRIS P1 TSL 5 BASIC4.57□□□□□ -1.68
FOXF1Q12946 DNAH7-202ENST00000409063 1845 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
FOXF1Q12946 NADK2-203ENST00000397338 3614 ntTSL 2 BASIC4.57□□□□□ -1.68
FOXF1Q12946 FBXL13-207ENST00000455112 2274 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
FOXF1Q12946 AC093849.1-201ENST00000563631 2209 ntBASIC4.57□□□□□ -1.68
FOXF1Q12946 CCNT1-205ENST00000618666 6915 ntTSL 2 BASIC4.57□□□□□ -1.68
FOXF1Q12946 DNA2-201ENST00000358410 4208 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
FOXF1Q12946 TBC1D23-201ENST00000344949 3656 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
FOXF1Q12946 SDHC-202ENST00000367975 13566 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
FOXF1Q12946 DCLK1-204ENST00000379893 4612 ntTSL 2 BASIC4.57□□□□□ -1.68
FOXF1Q12946 AC104260.2-201ENST00000623551 3497 ntBASIC4.56□□□□□ -1.68
FOXF1Q12946 PROM1-220ENST00000540805 3908 ntAPPRIS ALT2 TSL 5 BASIC4.56□□□□□ -1.68
FOXF1Q12946 UGP2-229ENST00000613823 1858 ntAPPRIS ALT1 TSL 5 BASIC4.56□□□□□ -1.68
FOXF1Q12946 UQCRC2P1-201ENST00000417777 1332 ntBASIC4.56□□□□□ -1.68
FOXF1Q12946 OR2AT4-205ENST00000641931 8357 ntAPPRIS P1 BASIC4.56□□□□□ -1.68
FOXF1Q12946 LCMT1-AS2-202ENST00000565214 5666 ntBASIC4.56□□□□□ -1.68
FOXF1Q12946 SPART-202ENST00000438666 4789 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
FOXF1Q12946 LMNTD1-207ENST00000539744 1729 ntAPPRIS ALT2 TSL 1 (best) BASIC4.56□□□□□ -1.68
FOXF1Q12946 OR8A1-201ENST00000284287 1146 ntAPPRIS P1 BASIC4.56□□□□□ -1.68
FOXF1Q12946 RNU4-4P-201ENST00000364588 130 ntBASIC4.56□□□□□ -1.68
FOXF1Q12946 IGLJ6-201ENST00000390328 70 ntAPPRIS P1 BASIC4.56□□□□□ -1.68
FOXF1Q12946 SPTLC1P2-201ENST00000407089 121 ntBASIC4.56□□□□□ -1.68
FOXF1Q12946 CTSL3P-202ENST00000412179 788 ntBASIC4.56□□□□□ -1.68
FOXF1Q12946 RPL23AP27-201ENST00000415161 451 ntBASIC4.56□□□□□ -1.68
FOXF1Q12946 RPL6P21-201ENST00000418672 846 ntBASIC4.56□□□□□ -1.68
FOXF1Q12946 AC096711.3-201ENST00000420721 582 ntTSL 4 BASIC4.56□□□□□ -1.68
FOXF1Q12946 FAM237A-201ENST00000441223 773 ntAPPRIS P1 TSL 2 BASIC4.56□□□□□ -1.68
FOXF1Q12946 AC092647.3-201ENST00000443044 633 ntBASIC4.56□□□□□ -1.68
FOXF1Q12946 AL161630.1-201ENST00000450938 1299 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
FOXF1Q12946 RN7SL515P-201ENST00000463999 297 ntBASIC4.56□□□□□ -1.68
FOXF1Q12946 AC069304.1-201ENST00000491593 704 ntBASIC4.56□□□□□ -1.68
FOXF1Q12946 RN7SL441P-201ENST00000492388 296 ntBASIC4.56□□□□□ -1.68
FOXF1Q12946 RN7SL808P-201ENST00000496066 299 ntBASIC4.56□□□□□ -1.68
FOXF1Q12946 LINC02217-201ENST00000505844 687 ntTSL 2 BASIC4.56□□□□□ -1.68
FOXF1Q12946 OR5M14P-201ENST00000506803 618 ntBASIC4.56□□□□□ -1.68
FOXF1Q12946 RNA5SP43-201ENST00000516559 110 ntBASIC4.56□□□□□ -1.68
FOXF1Q12946 AL512310.9-201ENST00000553311 948 ntBASIC4.56□□□□□ -1.68
FOXF1Q12946 NMNAT1P1-201ENST00000554095 876 ntBASIC4.56□□□□□ -1.68
FOXF1Q12946 AC009562.1-202ENST00000558755 565 ntTSL 4 BASIC4.56□□□□□ -1.68
FOXF1Q12946 AC127024.5-201ENST00000580085 462 ntBASIC4.56□□□□□ -1.68
FOXF1Q12946 AL445222.1-201ENST00000607259 628 ntBASIC4.56□□□□□ -1.68
FOXF1Q12946 BNIP3P41-202ENST00000616656 861 ntBASIC4.56□□□□□ -1.68
FOXF1Q12946 Metazoa_SRP.55-201ENST00000618452 275 ntBASIC4.56□□□□□ -1.68
FOXF1Q12946 MIR6719-201ENST00000622428 87 ntBASIC4.56□□□□□ -1.68
FOXF1Q12946 AC005972.4-201ENST00000636248 1131 ntTSL 5 BASIC4.56□□□□□ -1.68
FOXF1Q12946 ASAH1-224ENST00000636269 685 ntTSL 3 BASIC4.56□□□□□ -1.68
FOXF1Q12946 LEUTX-202ENST00000638280 667 ntAPPRIS P1 TSL 3 BASIC4.56□□□□□ -1.68
FOXF1Q12946 NLRC4-203ENST00000402280 3355 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 72.1 ms