Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 APOPT1-204ENST00000473127 739 ntTSL 3 BASIC6.28□□□□□ -1.4
RNF4P78317 RN7SL70P-201ENST00000478322 302 ntBASIC6.28□□□□□ -1.4
RNF4P78317 UMAD1-204ENST00000482067 569 ntTSL 5 BASIC6.28□□□□□ -1.4
RNF4P78317 SSBP1-211ENST00000484178 676 ntAPPRIS P1 TSL 3 BASIC6.28□□□□□ -1.4
RNF4P78317 RPL5P33-201ENST00000487833 905 ntBASIC6.28□□□□□ -1.4
RNF4P78317 AC073610.1-201ENST00000489971 396 ntBASIC6.28□□□□□ -1.4
RNF4P78317 TMED11P-203ENST00000502630 533 ntTSL 5 BASIC6.28□□□□□ -1.4
RNF4P78317 AC009567.2-201ENST00000502989 349 ntBASIC6.28□□□□□ -1.4
RNF4P78317 LINC01608-201ENST00000523557 544 ntTSL 4 BASIC6.28□□□□□ -1.4
RNF4P78317 AP003033.2-201ENST00000528901 805 ntBASIC6.28□□□□□ -1.4
RNF4P78317 AP002812.4-201ENST00000532139 286 ntBASIC6.28□□□□□ -1.4
RNF4P78317 AP002765.2-201ENST00000532961 666 ntTSL 3 BASIC6.28□□□□□ -1.4
RNF4P78317 RACGAP1-216ENST00000548961 387 ntTSL 3 BASIC6.28□□□□□ -1.4
RNF4P78317 RPL3P13-201ENST00000550415 216 ntBASIC6.28□□□□□ -1.4
RNF4P78317 EEF1B2P4-201ENST00000551398 348 ntBASIC6.28□□□□□ -1.4
RNF4P78317 AC009269.4-201ENST00000557828 440 ntTSL 3 BASIC6.28□□□□□ -1.4
RNF4P78317 AC066612.2-201ENST00000559875 695 ntTSL 2 BASIC6.28□□□□□ -1.4
RNF4P78317 LINC02188-201ENST00000562064 550 ntTSL 4 BASIC6.28□□□□□ -1.4
RNF4P78317 PIRT-201ENST00000580256 3810 ntAPPRIS P1 TSL 2 BASIC6.28□□□□□ -1.4
RNF4P78317 MIR548Y-201ENST00000582739 110 ntBASIC6.28□□□□□ -1.4
RNF4P78317 AC083760.1-201ENST00000589621 670 ntBASIC6.28□□□□□ -1.4
RNF4P78317 RPARP-AS1-204ENST00000594818 445 ntTSL 3 BASIC6.28□□□□□ -1.4
RNF4P78317 ARF4-AS1-203ENST00000607782 552 ntTSL 3 BASIC6.28□□□□□ -1.4
RNF4P78317 AC091768.1-201ENST00000609258 930 ntBASIC6.28□□□□□ -1.4
RNF4P78317 AL513478.2-201ENST00000610400 988 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
RNF4P78317 AC090970.3-201ENST00000612566 866 ntBASIC6.28□□□□□ -1.4
RNF4P78317 MILR1-204ENST00000616498 747 ntAPPRIS ALT2 TSL 1 (best) BASIC6.28□□□□□ -1.4
RNF4P78317 C3orf79-201ENST00000623038 580 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
RNF4P78317 ITGA9-AS1-218ENST00000630762 751 ntTSL 5 BASIC6.28□□□□□ -1.4
RNF4P78317 AC027559.1-201ENST00000636288 271 ntBASIC6.28□□□□□ -1.4
RNF4P78317 NXPE4-202ENST00000424261 1687 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
RNF4P78317 PCBP1-AS1-210ENST00000416395 2451 ntTSL 2 BASIC6.28□□□□□ -1.4
RNF4P78317 FBXO43-201ENST00000428847 2886 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
RNF4P78317 TMED3-202ENST00000424155 16555 ntTSL 3 BASIC6.28□□□□□ -1.4
RNF4P78317 AC005618.1-201ENST00000606901 3148 ntBASIC6.28□□□□□ -1.4
RNF4P78317 ANXA1-201ENST00000257497 1509 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
RNF4P78317 CR383658.2-201ENST00000547576 1525 ntBASIC6.28□□□□□ -1.4
RNF4P78317 MAPK10-383ENST00000642032 3390 ntBASIC6.28□□□□□ -1.4
RNF4P78317 OR2L5-201ENST00000355281 2429 ntAPPRIS P1 BASIC6.28□□□□□ -1.4
RNF4P78317 HYDIN-215ENST00000541601 3058 ntAPPRIS ALT2 TSL 2 BASIC6.28□□□□□ -1.4
RNF4P78317 DNAH2-201ENST00000389173 13505 ntAPPRIS P1 TSL 2 BASIC6.28□□□□□ -1.4
RNF4P78317 ADGRB3-203ENST00000546190 4569 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
RNF4P78317 OSBPL6-207ENST00000409631 3273 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
RNF4P78317 TCF4-268ENST00000629387 3789 ntAPPRIS ALT1 TSL 5 BASIC6.28□□□□□ -1.4
RNF4P78317 NOL8-208ENST00000442668 4281 ntAPPRIS P3 TSL 1 (best) BASIC6.28□□□□□ -1.4
RNF4P78317 AC140479.2-201ENST00000421567 3130 ntBASIC6.28□□□□□ -1.4
RNF4P78317 TRIM6-TRIM34-201ENST00000354852 3391 ntAPPRIS P1 TSL 2 BASIC6.27□□□□□ -1.4
RNF4P78317 MTPAP-201ENST00000263063 5601 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
RNF4P78317 SSXP3-201ENST00000442971 1300 ntBASIC6.27□□□□□ -1.41
RNF4P78317 AC139713.2-209ENST00000509873 1303 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
RNF4P78317 AL138828.1-203ENST00000419926 1570 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
RNF4P78317 GLYATL1-201ENST00000300079 2068 ntAPPRIS P3 TSL 2 BASIC6.27□□□□□ -1.41
RNF4P78317 PAICS-208ENST00000514888 3340 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
RNF4P78317 LCP1-202ENST00000398576 3944 ntAPPRIS P1 TSL 5 BASIC6.27□□□□□ -1.41
RNF4P78317 CYP2C8-201ENST00000371270 1923 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
RNF4P78317 TMCO5A-205ENST00000559502 1939 ntAPPRIS ALT2 TSL 2 BASIC6.27□□□□□ -1.41
RNF4P78317 NAP1L1-227ENST00000618691 13505 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
RNF4P78317 AL050403.1-201ENST00000448859 2006 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
RNF4P78317 LTA4H-209ENST00000552789 2025 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
RNF4P78317 CX3CR1-202ENST00000399220 3106 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
RNF4P78317 DACH2-207ENST00000510272 1764 ntTSL 2 BASIC6.27□□□□□ -1.41
RNF4P78317 LACRT-201ENST00000257867 551 ntAPPRIS P2 TSL 1 (best) BASIC6.27□□□□□ -1.41
RNF4P78317 LDHC-201ENST00000280704 1256 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
RNF4P78317 TMEM31-201ENST00000319560 728 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
RNF4P78317 BPY2-201ENST00000331070 1206 ntAPPRIS P5 TSL 1 (best) BASIC6.27□□□□□ -1.41
RNF4P78317 TAS2R42-201ENST00000334266 945 ntAPPRIS P1 BASIC6.27□□□□□ -1.41
RNF4P78317 Y_RNA.303-201ENST00000364998 94 ntBASIC6.27□□□□□ -1.41
RNF4P78317 SNORA70.3-201ENST00000365075 132 ntBASIC6.27□□□□□ -1.41
RNF4P78317 XAGE3-202ENST00000375491 489 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
RNF4P78317 BPY2C-201ENST00000382287 1206 ntAPPRIS P5 TSL 1 (best) BASIC6.27□□□□□ -1.41
RNF4P78317 BPY2B-201ENST00000382392 1206 ntAPPRIS P5 TSL 1 (best) BASIC6.27□□□□□ -1.41
RNF4P78317 Y_RNA.390-201ENST00000383932 102 ntBASIC6.27□□□□□ -1.41
RNF4P78317 RNU6-259P-201ENST00000383999 107 ntBASIC6.27□□□□□ -1.41
RNF4P78317 MIR16-1-201ENST00000385271 89 ntBASIC6.27□□□□□ -1.41
RNF4P78317 SDHC-203ENST00000392169 369 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
RNF4P78317 OR6C69P-201ENST00000394268 893 ntBASIC6.27□□□□□ -1.41
RNF4P78317 AC026310.1-201ENST00000396004 378 ntBASIC6.27□□□□□ -1.41
RNF4P78317 CABYR-204ENST00000399499 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC6.27□□□□□ -1.41
RNF4P78317 MTCO3P31-201ENST00000405526 789 ntBASIC6.27□□□□□ -1.41
RNF4P78317 NCSTNP1-201ENST00000406229 144 ntBASIC6.27□□□□□ -1.41
RNF4P78317 MIR1266-201ENST00000408125 84 ntBASIC6.27□□□□□ -1.41
RNF4P78317 MIR4435-2HG-203ENST00000409569 514 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
RNF4P78317 AC084030.1-202ENST00000413385 880 ntTSL 5 BASIC6.27□□□□□ -1.41
RNF4P78317 RPL21P108-201ENST00000413857 481 ntBASIC6.27□□□□□ -1.41
RNF4P78317 MTND4LP17-201ENST00000414607 293 ntBASIC6.27□□□□□ -1.41
RNF4P78317 AL353608.1-201ENST00000419576 416 ntTSL 5 BASIC6.27□□□□□ -1.41
RNF4P78317 AL009174.1-201ENST00000426577 416 ntBASIC6.27□□□□□ -1.41
RNF4P78317 AL357833.2-201ENST00000426811 430 ntTSL 3 BASIC6.27□□□□□ -1.41
RNF4P78317 AP001324.1-201ENST00000428553 399 ntBASIC6.27□□□□□ -1.41
RNF4P78317 AC239367.3-201ENST00000428996 814 ntBASIC6.27□□□□□ -1.41
RNF4P78317 NFIA-AS2-203ENST00000438559 1275 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
RNF4P78317 AC234771.4-201ENST00000441416 730 ntBASIC6.27□□□□□ -1.41
RNF4P78317 LINC00366-201ENST00000441430 435 ntTSL 2 BASIC6.27□□□□□ -1.41
RNF4P78317 SNRPBP1-201ENST00000443634 282 ntBASIC6.27□□□□□ -1.41
RNF4P78317 AC005297.1-201ENST00000444765 862 ntBASIC6.27□□□□□ -1.41
RNF4P78317 PFN1P11-201ENST00000445829 389 ntBASIC6.27□□□□□ -1.41
RNF4P78317 AL139081.1-201ENST00000452207 382 ntTSL 3 BASIC6.27□□□□□ -1.41
RNF4P78317 LINC00393-202ENST00000452852 485 ntTSL 3 BASIC6.27□□□□□ -1.41
RNF4P78317 AL359385.1-201ENST00000456509 365 ntBASIC6.27□□□□□ -1.41
RNF4P78317 OR9M1P-201ENST00000459641 921 ntBASIC6.27□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 88.5 ms