Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 EMSY-201ENST00000334736 5508 ntAPPRIS P3 TSL 5 BASIC5.16□□□□□ -1.58
HMGA1P17096 BDNF-AS-202ENST00000499568 2039 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
HMGA1P17096 TRPC4-207ENST00000426868 2709 ntTSL 2 BASIC5.16□□□□□ -1.58
HMGA1P17096 GHR-210ENST00000615111 4814 ntAPPRIS P1 TSL 5 BASIC5.16□□□□□ -1.58
HMGA1P17096 SP110-202ENST00000258382 2080 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
HMGA1P17096 NRDE2-201ENST00000354366 14208 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.58
HMGA1P17096 KLHL28-201ENST00000355081 2177 ntTSL 1 (best) BASIC5.15□□□□□ -1.58
HMGA1P17096 SMG1P3-204ENST00000520823 3194 ntTSL 5 BASIC5.15□□□□□ -1.58
HMGA1P17096 SLC13A1-201ENST00000194130 3815 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.59
HMGA1P17096 AL357515.1-201ENST00000402967 542 ntBASIC5.15□□□□□ -1.59
HMGA1P17096 TBCAP2-201ENST00000416175 326 ntBASIC5.15□□□□□ -1.59
HMGA1P17096 ZDHHC20P1-204ENST00000435787 423 ntBASIC5.15□□□□□ -1.59
HMGA1P17096 AL138878.2-201ENST00000440581 1241 ntBASIC5.15□□□□□ -1.59
HMGA1P17096 AC000111.2-201ENST00000448200 210 ntBASIC5.15□□□□□ -1.59
HMGA1P17096 AL355870.1-201ENST00000448272 454 ntTSL 3 BASIC5.15□□□□□ -1.59
HMGA1P17096 AC010733.1-201ENST00000451515 401 ntBASIC5.15□□□□□ -1.59
HMGA1P17096 PRPF38AP1-201ENST00000451976 933 ntBASIC5.15□□□□□ -1.59
HMGA1P17096 OR52E3P-201ENST00000452083 936 ntBASIC5.15□□□□□ -1.59
HMGA1P17096 RN7SL738P-201ENST00000470264 297 ntBASIC5.15□□□□□ -1.59
HMGA1P17096 AC011005.3-201ENST00000491624 395 ntBASIC5.15□□□□□ -1.59
HMGA1P17096 AC105420.1-201ENST00000504389 582 ntBASIC5.15□□□□□ -1.59
HMGA1P17096 AC091180.4-201ENST00000511322 245 ntTSL 2 BASIC5.15□□□□□ -1.59
HMGA1P17096 AC090809.1-201ENST00000524132 570 ntTSL 4 BASIC5.15□□□□□ -1.59
HMGA1P17096 AP006289.1-201ENST00000538089 277 ntBASIC5.15□□□□□ -1.59
HMGA1P17096 AP001880.2-201ENST00000538233 448 ntBASIC5.15□□□□□ -1.59
HMGA1P17096 AC126323.3-201ENST00000565136 564 ntTSL 4 BASIC5.15□□□□□ -1.59
HMGA1P17096 PRPF19P1-201ENST00000584766 898 ntBASIC5.15□□□□□ -1.59
HMGA1P17096 AC234771.5-201ENST00000600161 514 ntBASIC5.15□□□□□ -1.59
HMGA1P17096 AC007497.1-201ENST00000610421 561 ntBASIC5.15□□□□□ -1.59
HMGA1P17096 LINC01524-201ENST00000428009 4390 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
HMGA1P17096 CFI-202ENST00000394635 2053 ntAPPRIS ALT2 TSL 2 BASIC5.15□□□□□ -1.59
HMGA1P17096 RYR3-212ENST00000634891 15591 ntAPPRIS P3 TSL 1 (best) BASIC5.15□□□□□ -1.59
HMGA1P17096 FOXP2-203ENST00000378237 2187 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
HMGA1P17096 SAMM50P1-201ENST00000455403 1399 ntBASIC5.15□□□□□ -1.59
HMGA1P17096 CTAGE5-207ENST00000396165 3071 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
HMGA1P17096 AL138820.1-201ENST00000617901 5305 ntBASIC5.15□□□□□ -1.59
HMGA1P17096 LINC01206-204ENST00000482787 9580 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
HMGA1P17096 LINC02388-201ENST00000550678 1975 ntTSL 2 BASIC5.15□□□□□ -1.59
HMGA1P17096 R3HDM1-203ENST00000409606 3673 ntAPPRIS ALT1 TSL 2 BASIC5.15□□□□□ -1.59
HMGA1P17096 ATP2C1-210ENST00000505330 4888 ntAPPRIS ALT2 TSL 2 BASIC5.14□□□□□ -1.59
HMGA1P17096 RGS4-202ENST00000367908 2606 ntTSL 2 BASIC5.14□□□□□ -1.59
HMGA1P17096 LINC02085-201ENST00000465215 2051 ntTSL 2 BASIC5.14□□□□□ -1.59
HMGA1P17096 SLFN12-201ENST00000304905 2383 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
HMGA1P17096 RFX3-204ENST00000382004 9307 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
HMGA1P17096 ZNF23-207ENST00000564528 3020 ntAPPRIS ALT2 TSL 2 BASIC5.14□□□□□ -1.59
HMGA1P17096 AC005162.3-201ENST00000609389 3695 ntTSL 5 BASIC5.14□□□□□ -1.59
HMGA1P17096 RGS5-212ENST00000618415 5812 ntTSL 4 BASIC5.14□□□□□ -1.59
HMGA1P17096 PDS5B-201ENST00000315596 7497 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
HMGA1P17096 AL158066.1-201ENST00000451298 3796 ntTSL 2 BASIC5.14□□□□□ -1.59
HMGA1P17096 XAGE1A-202ENST00000375600 474 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
HMGA1P17096 XAGE1B-202ENST00000375613 474 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
HMGA1P17096 RNU6-398P-201ENST00000384143 109 ntBASIC5.14□□□□□ -1.59
HMGA1P17096 AC013442.1-201ENST00000397347 228 ntBASIC5.14□□□□□ -1.59
HMGA1P17096 RNA5SP345-201ENST00000410646 108 ntBASIC5.14□□□□□ -1.59
HMGA1P17096 NPM1P40-201ENST00000412758 733 ntBASIC5.14□□□□□ -1.59
HMGA1P17096 AC245028.1-201ENST00000423259 256 ntBASIC5.14□□□□□ -1.59
HMGA1P17096 AC122136.1-201ENST00000443971 478 ntTSL 3 BASIC5.14□□□□□ -1.59
HMGA1P17096 OR1H1P-201ENST00000448731 937 ntBASIC5.14□□□□□ -1.59
HMGA1P17096 AC073264.2-201ENST00000448886 166 ntBASIC5.14□□□□□ -1.59
HMGA1P17096 PCBP1-AS1-237ENST00000452431 1194 ntTSL 4 BASIC5.14□□□□□ -1.59
HMGA1P17096 AC234781.3-201ENST00000452540 973 ntBASIC5.14□□□□□ -1.59
HMGA1P17096 AL356289.2-201ENST00000455238 292 ntTSL 5 BASIC5.14□□□□□ -1.59
HMGA1P17096 GYG1P1-201ENST00000460864 698 ntBASIC5.14□□□□□ -1.59
HMGA1P17096 AC116562.1-201ENST00000485355 781 ntBASIC5.14□□□□□ -1.59
HMGA1P17096 OR2A3P-201ENST00000493774 953 ntBASIC5.14□□□□□ -1.59
HMGA1P17096 AC083795.2-201ENST00000510034 610 ntTSL 3 BASIC5.14□□□□□ -1.59
HMGA1P17096 MAL2-201ENST00000522112 573 ntTSL 4 BASIC5.14□□□□□ -1.59
HMGA1P17096 HIGD1AP5-201ENST00000529959 259 ntBASIC5.14□□□□□ -1.59
HMGA1P17096 AC104002.2-201ENST00000553919 318 ntTSL 5 BASIC5.14□□□□□ -1.59
HMGA1P17096 AGBL1-AS1-203ENST00000566878 865 ntTSL 3 BASIC5.14□□□□□ -1.59
HMGA1P17096 SRD5A3-AS1-209ENST00000598819 552 ntTSL 5 BASIC5.14□□□□□ -1.59
HMGA1P17096 AL049794.2-201ENST00000616301 365 ntBASIC5.14□□□□□ -1.59
HMGA1P17096 AL031658.2-201ENST00000616850 651 ntBASIC5.14□□□□□ -1.59
HMGA1P17096 AC091932.2-201ENST00000623014 291 ntBASIC5.14□□□□□ -1.59
HMGA1P17096 GOLT1B-210ENST00000631252 223 ntTSL 3 BASIC5.14□□□□□ -1.59
HMGA1P17096 SMARCA2-231ENST00000634931 939 ntTSL 5 BASIC5.14□□□□□ -1.59
HMGA1P17096 FHL1-218ENST00000543669 2878 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
HMGA1P17096 AL450345.1-202ENST00000605741 3881 ntBASIC5.14□□□□□ -1.59
HMGA1P17096 UQCRC2P1-201ENST00000417777 1332 ntBASIC5.14□□□□□ -1.59
HMGA1P17096 SRGAP1-201ENST00000355086 23331 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
HMGA1P17096 NPIPB9-201ENST00000357796 2037 ntAPPRIS ALT2 TSL 1 (best) BASIC5.14□□□□□ -1.59
HMGA1P17096 CASC19-260ENST00000641828 2001 ntBASIC5.14□□□□□ -1.59
HMGA1P17096 GLRA2-202ENST00000355020 1730 ntAPPRIS ALT1 TSL 1 (best) BASIC5.14□□□□□ -1.59
HMGA1P17096 AC018557.1-201ENST00000569274 1790 ntTSL 5 BASIC5.14□□□□□ -1.59
HMGA1P17096 MMAA-205ENST00000541599 1437 ntTSL 5 BASIC5.14□□□□□ -1.59
HMGA1P17096 SYTL2-204ENST00000389958 1943 ntTSL 2 BASIC5.13□□□□□ -1.59
HMGA1P17096 TJP1-209ENST00000545208 5007 ntAPPRIS ALT2 TSL 5 BASIC5.13□□□□□ -1.59
HMGA1P17096 PLEKHS1-204ENST00000369310 2046 ntAPPRIS ALT2 TSL 1 (best) BASIC5.13□□□□□ -1.59
HMGA1P17096 FBXO3-208ENST00000530401 7410 ntTSL 2 BASIC5.13□□□□□ -1.59
HMGA1P17096 PFKFB2-202ENST00000367080 7094 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
HMGA1P17096 RNA5SP505-201ENST00000364748 108 ntBASIC5.13□□□□□ -1.59
HMGA1P17096 RN7SKP16-201ENST00000410180 299 ntBASIC5.13□□□□□ -1.59
HMGA1P17096 RNU2-50P-201ENST00000410494 143 ntBASIC5.13□□□□□ -1.59
HMGA1P17096 FAR2P2-201ENST00000413041 594 ntBASIC5.13□□□□□ -1.59
HMGA1P17096 COX5BP7-201ENST00000414780 274 ntBASIC5.13□□□□□ -1.59
HMGA1P17096 AC023347.1-202ENST00000419223 440 ntTSL 5 BASIC5.13□□□□□ -1.59
HMGA1P17096 FAR2P4-202ENST00000425399 584 ntBASIC5.13□□□□□ -1.59
HMGA1P17096 C6orf52-203ENST00000426700 493 ntAPPRIS P2 TSL 2 BASIC5.13□□□□□ -1.59
HMGA1P17096 OR2B7P-201ENST00000429302 934 ntBASIC5.13□□□□□ -1.59
HMGA1P17096 RPL5P2-201ENST00000429598 854 ntBASIC5.13□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 165.8 ms