Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 ZFHX3-207ENST00000641206 16414 ntAPPRIS P1 BASIC7.79□□□□□ -1.16
LIMD1Q9UGP4 AC119744.1-201ENST00000454746 1715 ntBASIC7.79□□□□□ -1.16
LIMD1Q9UGP4 AC008937.3-201ENST00000606813 1700 ntBASIC7.79□□□□□ -1.16
LIMD1Q9UGP4 FOPNL-201ENST00000255759 2275 ntAPPRIS P1 TSL 1 (best) BASIC7.79□□□□□ -1.16
LIMD1Q9UGP4 RPL24P4-201ENST00000326586 421 ntBASIC7.79□□□□□ -1.16
LIMD1Q9UGP4 ELSPBP1-201ENST00000339841 1052 ntAPPRIS P2 TSL 1 (best) BASIC7.79□□□□□ -1.16
LIMD1Q9UGP4 SNORD81.2-201ENST00000365153 76 ntBASIC7.79□□□□□ -1.16
LIMD1Q9UGP4 ST3GAL3-212ENST00000372362 468 ntTSL 1 (best) BASIC7.79□□□□□ -1.16
LIMD1Q9UGP4 RN7SKP222-201ENST00000410651 315 ntBASIC7.79□□□□□ -1.16
LIMD1Q9UGP4 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC7.79□□□□□ -1.16
LIMD1Q9UGP4 AC004986.1-201ENST00000414855 607 ntBASIC7.79□□□□□ -1.16
LIMD1Q9UGP4 C21orf91-OT1-202ENST00000430815 717 ntTSL 5 BASIC7.79□□□□□ -1.16
LIMD1Q9UGP4 RPL35P8-201ENST00000433284 337 ntBASIC7.79□□□□□ -1.16
LIMD1Q9UGP4 AC064862.5-201ENST00000440618 334 ntBASIC7.79□□□□□ -1.16
LIMD1Q9UGP4 MTCYBP6-201ENST00000441810 138 ntBASIC7.79□□□□□ -1.16
LIMD1Q9UGP4 LIX1L-AS1-206ENST00000447686 846 ntTSL 2 BASIC7.79□□□□□ -1.16
LIMD1Q9UGP4 MTCO1P42-201ENST00000457379 726 ntBASIC7.79□□□□□ -1.16
LIMD1Q9UGP4 TDGF1P6-201ENST00000463873 448 ntBASIC7.79□□□□□ -1.16
LIMD1Q9UGP4 RPS16P9-201ENST00000477220 427 ntBASIC7.79□□□□□ -1.16
LIMD1Q9UGP4 RPL7P6-201ENST00000480903 738 ntBASIC7.79□□□□□ -1.16
LIMD1Q9UGP4 NDUFS5P2-201ENST00000484004 306 ntBASIC7.79□□□□□ -1.16
LIMD1Q9UGP4 AC009153.1-201ENST00000485799 496 ntBASIC7.79□□□□□ -1.16
LIMD1Q9UGP4 AC138517.1-201ENST00000515724 568 ntBASIC7.79□□□□□ -1.16
LIMD1Q9UGP4 LINC00824-201ENST00000517583 805 ntTSL 5 BASIC7.79□□□□□ -1.16
LIMD1Q9UGP4 RPS20-202ENST00000518875 671 ntTSL 2 BASIC7.79□□□□□ -1.16
LIMD1Q9UGP4 AC008415.1-201ENST00000522189 734 ntTSL 5 BASIC7.79□□□□□ -1.16
LIMD1Q9UGP4 RGS5-219ENST00000528019 512 ntTSL 4 BASIC7.79□□□□□ -1.16
LIMD1Q9UGP4 ST3GAL3-232ENST00000531451 420 ntTSL 1 (best) BASIC7.79□□□□□ -1.16
LIMD1Q9UGP4 AC092112.1-201ENST00000538329 640 ntTSL 3 BASIC7.79□□□□□ -1.16
LIMD1Q9UGP4 AL133163.3-201ENST00000556448 504 ntTSL 5 BASIC7.79□□□□□ -1.16
LIMD1Q9UGP4 AC021739.4-201ENST00000561417 569 ntTSL 4 BASIC7.79□□□□□ -1.16
LIMD1Q9UGP4 RN7SL835P-201ENST00000579920 262 ntBASIC7.79□□□□□ -1.16
LIMD1Q9UGP4 AL008635.1-201ENST00000609073 385 ntTSL 3 BASIC7.79□□□□□ -1.16
LIMD1Q9UGP4 AC090527.3-201ENST00000619041 548 ntBASIC7.79□□□□□ -1.16
LIMD1Q9UGP4 NAALAD2-201ENST00000321955 3035 ntTSL 2 BASIC7.79□□□□□ -1.16
LIMD1Q9UGP4 RABEP1-201ENST00000341923 2490 ntTSL 1 (best) BASIC7.79□□□□□ -1.16
LIMD1Q9UGP4 AC016027.2-201ENST00000441167 2493 ntTSL 1 (best) BASIC7.79□□□□□ -1.16
LIMD1Q9UGP4 IFIT2-202ENST00000611722 3038 ntAPPRIS ALT2 TSL 5 BASIC7.79□□□□□ -1.16
LIMD1Q9UGP4 ZNF69-202ENST00000429654 2010 ntAPPRIS P1 TSL 2 BASIC7.79□□□□□ -1.16
LIMD1Q9UGP4 TRIM2-201ENST00000338700 6735 ntTSL 1 (best) BASIC7.79□□□□□ -1.16
LIMD1Q9UGP4 RALYL-204ENST00000518566 2682 ntAPPRIS ALT2 TSL 2 BASIC7.79□□□□□ -1.16
LIMD1Q9UGP4 CRB1-202ENST00000367399 3885 ntTSL 1 (best) BASIC7.79□□□□□ -1.16
LIMD1Q9UGP4 CDC73-204ENST00000635846 3987 ntTSL 5 BASIC7.79□□□□□ -1.16
LIMD1Q9UGP4 ABCC4-201ENST00000376887 5839 ntAPPRIS P1 TSL 1 (best) BASIC7.79□□□□□ -1.16
LIMD1Q9UGP4 AC008080.4-201ENST00000420185 1589 ntTSL 2 BASIC7.79□□□□□ -1.16
LIMD1Q9UGP4 FCGR1B-210ENST00000623603 1581 ntAPPRIS P2 TSL 1 (best) BASIC7.79□□□□□ -1.16
LIMD1Q9UGP4 ZNF43-201ENST00000354959 2881 ntAPPRIS P3 TSL 1 (best) BASIC7.79□□□□□ -1.16
LIMD1Q9UGP4 CD69-201ENST00000228434 1676 ntAPPRIS P1 TSL 1 (best) BASIC7.79□□□□□ -1.16
LIMD1Q9UGP4 ADAM5-201ENST00000359790 1663 ntTSL 1 (best) BASIC7.79□□□□□ -1.16
LIMD1Q9UGP4 AC025574.1-201ENST00000554784 1653 ntBASIC7.79□□□□□ -1.16
LIMD1Q9UGP4 ANKRD30A-205ENST00000611781 4474 ntAPPRIS ALT2 TSL 5 BASIC7.79□□□□□ -1.16
LIMD1Q9UGP4 KLHL2-209ENST00000514860 2442 ntAPPRIS ALT2 TSL 2 BASIC7.79□□□□□ -1.16
LIMD1Q9UGP4 NF1P2-201ENST00000556855 2505 ntBASIC7.79□□□□□ -1.16
LIMD1Q9UGP4 GPI-202ENST00000415930 4000 ntTSL 2 BASIC7.79□□□□□ -1.16
LIMD1Q9UGP4 AC104083.1-201ENST00000569449 2615 ntBASIC7.79□□□□□ -1.16
LIMD1Q9UGP4 FAF2-201ENST00000261942 4515 ntAPPRIS P1 TSL 1 (best) BASIC7.79□□□□□ -1.16
LIMD1Q9UGP4 OTX2-201ENST00000339475 3001 ntTSL 1 (best) BASIC7.78□□□□□ -1.16
LIMD1Q9UGP4 ATF2-221ENST00000538946 1325 ntTSL 5 BASIC7.78□□□□□ -1.16
LIMD1Q9UGP4 CCT4P2-201ENST00000233836 1548 ntBASIC7.78□□□□□ -1.16
LIMD1Q9UGP4 SORBS1-204ENST00000361941 3940 ntAPPRIS ALT2 TSL 1 (best) BASIC7.78□□□□□ -1.16
LIMD1Q9UGP4 AC135012.3-201ENST00000599841 4039 ntTSL 4 BASIC7.78□□□□□ -1.16
LIMD1Q9UGP4 TTC41P-204ENST00000548897 2998 ntTSL 5 BASIC7.78□□□□□ -1.16
LIMD1Q9UGP4 DYNC1I2P1-201ENST00000435916 1838 ntBASIC7.78□□□□□ -1.16
LIMD1Q9UGP4 ALPK1-201ENST00000177648 4537 ntAPPRIS P3 TSL 1 (best) BASIC7.78□□□□□ -1.16
LIMD1Q9UGP4 OR4F15-201ENST00000332238 2119 ntAPPRIS P1 BASIC7.78□□□□□ -1.16
LIMD1Q9UGP4 LMO3-204ENST00000354662 3574 ntAPPRIS P1 TSL 2 BASIC7.78□□□□□ -1.16
LIMD1Q9UGP4 PDIK1L-202ENST00000374271 4279 ntAPPRIS P1 TSL 1 (best) BASIC7.78□□□□□ -1.16
LIMD1Q9UGP4 SLC7A14-201ENST00000231706 10103 ntAPPRIS P1 TSL 2 BASIC7.78□□□□□ -1.16
LIMD1Q9UGP4 NACA-216ENST00000550952 2922 ntTSL 2 BASIC7.78□□□□□ -1.16
LIMD1Q9UGP4 GNG3-201ENST00000294117 882 ntAPPRIS P1 TSL 1 (best) BASIC7.78□□□□□ -1.16
LIMD1Q9UGP4 MUC1-206ENST00000368390 804 ntTSL 1 (best) BASIC7.78□□□□□ -1.16
LIMD1Q9UGP4 MUC1-210ENST00000368398 729 ntTSL 1 (best) BASIC7.78□□□□□ -1.16
LIMD1Q9UGP4 RNU6-1151P-201ENST00000384684 107 ntBASIC7.78□□□□□ -1.16
LIMD1Q9UGP4 MIR191-201ENST00000384873 92 ntBASIC7.78□□□□□ -1.16
LIMD1Q9UGP4 ARSFP1-201ENST00000398758 477 ntBASIC7.78□□□□□ -1.16
LIMD1Q9UGP4 AL356432.1-201ENST00000405809 419 ntBASIC7.78□□□□□ -1.16
LIMD1Q9UGP4 Z82198.3-201ENST00000421145 199 ntBASIC7.78□□□□□ -1.16
LIMD1Q9UGP4 RPL7P57-201ENST00000423238 740 ntBASIC7.78□□□□□ -1.16
LIMD1Q9UGP4 TAB2-AS1-201ENST00000424421 730 ntTSL 5 BASIC7.78□□□□□ -1.16
LIMD1Q9UGP4 RPL31P35-201ENST00000431058 377 ntBASIC7.78□□□□□ -1.16
LIMD1Q9UGP4 TMEM244-202ENST00000438392 565 ntAPPRIS P1 TSL 5 BASIC7.78□□□□□ -1.16
LIMD1Q9UGP4 EIF4A1P6-201ENST00000448133 1210 ntBASIC7.78□□□□□ -1.16
LIMD1Q9UGP4 ARPC3P5-201ENST00000448802 534 ntBASIC7.78□□□□□ -1.16
LIMD1Q9UGP4 AL158835.1-204ENST00000449693 371 ntTSL 3 BASIC7.78□□□□□ -1.16
LIMD1Q9UGP4 AC007953.1-201ENST00000450500 560 ntTSL 4 BASIC7.78□□□□□ -1.16
LIMD1Q9UGP4 AL157896.1-201ENST00000451617 790 ntTSL 1 (best) BASIC7.78□□□□□ -1.16
LIMD1Q9UGP4 RNU6-420P-201ENST00000458780 107 ntBASIC7.78□□□□□ -1.16
LIMD1Q9UGP4 FTH1P23-201ENST00000492727 550 ntBASIC7.78□□□□□ -1.16
LIMD1Q9UGP4 AC139783.2-201ENST00000504847 1145 ntBASIC7.78□□□□□ -1.16
LIMD1Q9UGP4 AC093305.1-201ENST00000514105 522 ntTSL 5 BASIC7.78□□□□□ -1.16
LIMD1Q9UGP4 RNU6-1003P-201ENST00000517099 105 ntBASIC7.78□□□□□ -1.16
LIMD1Q9UGP4 AC243972.3-201ENST00000539655 198 ntBASIC7.78□□□□□ -1.16
LIMD1Q9UGP4 AP000786.1-201ENST00000541092 581 ntTSL 4 BASIC7.78□□□□□ -1.16
LIMD1Q9UGP4 AC093027.1-201ENST00000546698 429 ntBASIC7.78□□□□□ -1.16
LIMD1Q9UGP4 AC011611.1-201ENST00000552179 197 ntBASIC7.78□□□□□ -1.16
LIMD1Q9UGP4 LINC02305-201ENST00000554142 476 ntTSL 3 BASIC7.78□□□□□ -1.16
LIMD1Q9UGP4 AL121821.1-201ENST00000557067 530 ntTSL 3 BASIC7.78□□□□□ -1.16
LIMD1Q9UGP4 AC006305.2-201ENST00000589617 552 ntTSL 4 BASIC7.78□□□□□ -1.16
LIMD1Q9UGP4 AC074135.1-202ENST00000600223 563 ntTSL 3 BASIC7.78□□□□□ -1.16
LIMD1Q9UGP4 AP001429.1-201ENST00000602568 530 ntBASIC7.78□□□□□ -1.16
Retrieved 100 of 98,524 protein–RNA pairs in 105 ms