Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 LINC01821-201ENST00000419786 1084 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
PTPN9P43378 AL929472.2-201ENST00000419993 481 ntTSL 5 BASIC5.66□□□□□ -1.5
PTPN9P43378 GNG5P5-201ENST00000420444 220 ntBASIC5.66□□□□□ -1.5
PTPN9P43378 AL034379.1-201ENST00000423216 253 ntBASIC5.66□□□□□ -1.5
PTPN9P43378 AC010737.1-201ENST00000426699 559 ntTSL 2 BASIC5.66□□□□□ -1.5
PTPN9P43378 UBE2D3P3-201ENST00000426992 425 ntBASIC5.66□□□□□ -1.5
PTPN9P43378 AC018832.1-201ENST00000428171 566 ntTSL 4 BASIC5.66□□□□□ -1.5
PTPN9P43378 CNTN4-AS2-201ENST00000447256 426 ntTSL 3 BASIC5.66□□□□□ -1.5
PTPN9P43378 EIF4A1P6-201ENST00000448133 1210 ntBASIC5.66□□□□□ -1.5
PTPN9P43378 RANP1-206ENST00000455094 651 ntBASIC5.66□□□□□ -1.5
PTPN9P43378 AC034195.1-203ENST00000455703 728 ntTSL 2 BASIC5.66□□□□□ -1.5
PTPN9P43378 AL592161.1-201ENST00000456389 861 ntTSL 3 BASIC5.66□□□□□ -1.5
PTPN9P43378 RSRC1-207ENST00000475278 1195 ntTSL 5 BASIC5.66□□□□□ -1.5
PTPN9P43378 AP000797.2-201ENST00000475768 606 ntBASIC5.66□□□□□ -1.5
PTPN9P43378 AC108729.2-201ENST00000476543 840 ntBASIC5.66□□□□□ -1.5
PTPN9P43378 RN7SL717P-201ENST00000478343 297 ntBASIC5.66□□□□□ -1.5
PTPN9P43378 RPL7P51-201ENST00000490532 749 ntBASIC5.66□□□□□ -1.5
PTPN9P43378 HMGB1P3-201ENST00000502802 616 ntBASIC5.66□□□□□ -1.5
PTPN9P43378 MTCO2P9-201ENST00000503214 694 ntBASIC5.66□□□□□ -1.5
PTPN9P43378 AC119751.4-201ENST00000507498 357 ntBASIC5.66□□□□□ -1.5
PTPN9P43378 GIN1-203ENST00000508629 1040 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
PTPN9P43378 MYLK-AS2-201ENST00000510827 500 ntTSL 3 BASIC5.66□□□□□ -1.5
PTPN9P43378 RFPL4AP3-201ENST00000515267 345 ntBASIC5.66□□□□□ -1.5
PTPN9P43378 RNU6-1102P-201ENST00000516149 96 ntBASIC5.66□□□□□ -1.5
PTPN9P43378 RN7SKP99-201ENST00000517028 307 ntBASIC5.66□□□□□ -1.5
PTPN9P43378 OR8G3P-201ENST00000533406 921 ntBASIC5.66□□□□□ -1.5
PTPN9P43378 AC007406.1-201ENST00000544067 315 ntTSL 3 BASIC5.66□□□□□ -1.5
PTPN9P43378 LINC02316-201ENST00000553346 768 ntTSL 3 BASIC5.66□□□□□ -1.5
PTPN9P43378 AC055855.2-201ENST00000565993 500 ntTSL 2 BASIC5.66□□□□□ -1.5
PTPN9P43378 LINC02520-201ENST00000570443 537 ntTSL 4 BASIC5.66□□□□□ -1.5
PTPN9P43378 AC027216.1-201ENST00000577726 685 ntBASIC5.66□□□□□ -1.5
PTPN9P43378 AC005242.1-201ENST00000585658 438 ntBASIC5.66□□□□□ -1.5
PTPN9P43378 AC022031.2-203ENST00000587346 565 ntTSL 4 BASIC5.66□□□□□ -1.5
PTPN9P43378 AP003117.1-201ENST00000602771 554 ntBASIC5.66□□□□□ -1.5
PTPN9P43378 MTATP6P2-201ENST00000603319 678 ntBASIC5.66□□□□□ -1.5
PTPN9P43378 AC108738.1-201ENST00000603703 237 ntBASIC5.66□□□□□ -1.5
PTPN9P43378 AC000068.2-201ENST00000608816 460 ntBASIC5.66□□□□□ -1.5
PTPN9P43378 AC245041.2-202ENST00000613389 493 ntTSL 5 BASIC5.66□□□□□ -1.5
PTPN9P43378 SNORA11.6-201ENST00000619030 128 ntBASIC5.66□□□□□ -1.5
PTPN9P43378 CCL4L2-217ENST00000620250 667 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
PTPN9P43378 AC097495.1-201ENST00000637675 546 ntAPPRIS P1 TSL 5 BASIC5.66□□□□□ -1.5
PTPN9P43378 IL1RAP-205ENST00000412504 4875 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
PTPN9P43378 ARHGAP5-206ENST00000539826 4881 ntAPPRIS P3 TSL 1 (best) BASIC5.66□□□□□ -1.5
PTPN9P43378 CSNK1G3-210ENST00000521364 2580 ntAPPRIS ALT2 TSL 2 BASIC5.66□□□□□ -1.5
PTPN9P43378 EPS8-209ENST00000542903 1858 ntTSL 2 BASIC5.66□□□□□ -1.5
PTPN9P43378 CCT6B-203ENST00000436961 1639 ntTSL 2 BASIC5.66□□□□□ -1.5
PTPN9P43378 ATF2-202ENST00000345739 4079 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
PTPN9P43378 ERBIN-208ENST00000506030 4386 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
PTPN9P43378 ZNF215-205ENST00000529903 1396 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
PTPN9P43378 AC003985.2-201ENST00000562268 1669 ntBASIC5.66□□□□□ -1.5
PTPN9P43378 ITCH-201ENST00000262650 3089 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
PTPN9P43378 AP001605.1-201ENST00000420186 2603 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
PTPN9P43378 ZNF790-201ENST00000356725 3037 ntAPPRIS P1 TSL 2 BASIC5.65□□□□□ -1.5
PTPN9P43378 FRAS1-207ENST00000512123 15624 ntAPPRIS P1 TSL 5 BASIC5.65□□□□□ -1.5
PTPN9P43378 TTBK2-201ENST00000267890 10905 ntAPPRIS P2 TSL 5 BASIC5.65□□□□□ -1.5
PTPN9P43378 PHACTR4-201ENST00000373836 3107 ntAPPRIS P4 TSL 5 BASIC5.65□□□□□ -1.5
PTPN9P43378 AP005432.1-201ENST00000580891 3485 ntBASIC5.65□□□□□ -1.5
PTPN9P43378 PRKAA1-204ENST00000397128 5088 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
PTPN9P43378 HUWE1-214ENST00000612484 14311 ntTSL 5 BASIC5.65□□□□□ -1.5
PTPN9P43378 MGP-201ENST00000228938 694 ntTSL 3 BASIC5.65□□□□□ -1.5
PTPN9P43378 OR51Q1-201ENST00000300778 1096 ntAPPRIS P1 BASIC5.65□□□□□ -1.5
PTPN9P43378 BPHL-201ENST00000380368 797 ntTSL 5 BASIC5.65□□□□□ -1.5
PTPN9P43378 OR5K3-201ENST00000383695 966 ntAPPRIS P1 BASIC5.65□□□□□ -1.5
PTPN9P43378 GPS2P1-201ENST00000411761 986 ntBASIC5.65□□□□□ -1.5
PTPN9P43378 AL138789.1-201ENST00000425820 960 ntTSL 2 BASIC5.65□□□□□ -1.5
PTPN9P43378 TXNDC12-AS1-201ENST00000428794 391 ntTSL 3 BASIC5.65□□□□□ -1.5
PTPN9P43378 GNGT1-203ENST00000429473 538 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
PTPN9P43378 GSTM5P1-201ENST00000434751 660 ntBASIC5.65□□□□□ -1.5
PTPN9P43378 AL627224.1-201ENST00000448334 444 ntBASIC5.65□□□□□ -1.5
PTPN9P43378 LINC01496-201ENST00000448761 460 ntTSL 5 BASIC5.65□□□□□ -1.5
PTPN9P43378 AL450344.2-201ENST00000455229 614 ntTSL 5 BASIC5.65□□□□□ -1.5
PTPN9P43378 SETP20-201ENST00000457046 852 ntBASIC5.65□□□□□ -1.5
PTPN9P43378 ABCC13-202ENST00000463099 3842 ntBASIC5.65□□□□□ -1.5
PTPN9P43378 RN7SL51P-201ENST00000468230 285 ntBASIC5.65□□□□□ -1.5
PTPN9P43378 RPL35AP19-201ENST00000469425 329 ntBASIC5.65□□□□□ -1.5
PTPN9P43378 AC100832.1-201ENST00000471945 383 ntBASIC5.65□□□□□ -1.5
PTPN9P43378 AC092754.1-201ENST00000472975 479 ntBASIC5.65□□□□□ -1.5
PTPN9P43378 AC007370.1-201ENST00000503163 316 ntTSL 2 BASIC5.65□□□□□ -1.5
PTPN9P43378 AC093801.1-201ENST00000504017 307 ntTSL 2 BASIC5.65□□□□□ -1.5
PTPN9P43378 EIF4E-204ENST00000504432 1132 ntTSL 5 BASIC5.65□□□□□ -1.5
PTPN9P43378 HMGB1P46-201ENST00000520062 610 ntBASIC5.65□□□□□ -1.5
PTPN9P43378 AC103855.1-201ENST00000525926 564 ntTSL 2 BASIC5.65□□□□□ -1.5
PTPN9P43378 OR4A43P-201ENST00000532938 908 ntBASIC5.65□□□□□ -1.5
PTPN9P43378 ANKRD49-206ENST00000540349 573 ntTSL 4 BASIC5.65□□□□□ -1.5
PTPN9P43378 MIR4307HG-201ENST00000548170 822 ntTSL 3 BASIC5.65□□□□□ -1.5
PTPN9P43378 AC008126.1-201ENST00000549019 480 ntBASIC5.65□□□□□ -1.5
PTPN9P43378 BLZF2P-201ENST00000553776 1130 ntBASIC5.65□□□□□ -1.5
PTPN9P43378 LINC02325-202ENST00000554260 567 ntTSL 4 BASIC5.65□□□□□ -1.5
PTPN9P43378 ARL2BPP3-202ENST00000580773 420 ntTSL 5 BASIC5.65□□□□□ -1.5
PTPN9P43378 AC008894.1-201ENST00000587693 367 ntTSL 5 BASIC5.65□□□□□ -1.5
PTPN9P43378 AL589674.2-201ENST00000604304 337 ntBASIC5.65□□□□□ -1.5
PTPN9P43378 AC005021.1-201ENST00000608730 355 ntBASIC5.65□□□□□ -1.5
PTPN9P43378 AC244107.2-201ENST00000611773 76 ntBASIC5.65□□□□□ -1.5
PTPN9P43378 MIR8080-201ENST00000622224 89 ntBASIC5.65□□□□□ -1.5
PTPN9P43378 AL138955.1-201ENST00000622881 1040 ntBASIC5.65□□□□□ -1.5
PTPN9P43378 OR51Q1-202ENST00000641085 1096 ntAPPRIS P1 BASIC5.65□□□□□ -1.5
PTPN9P43378 MCM9-209ENST00000619706 4822 ntAPPRIS P1 TSL 5 BASIC5.65□□□□□ -1.51
PTPN9P43378 PSG1-201ENST00000244296 2276 ntAPPRIS P3 TSL 1 (best) BASIC5.65□□□□□ -1.51
PTPN9P43378 GLYATL1-202ENST00000317391 1627 ntAPPRIS ALT2 TSL 1 (best) BASIC5.65□□□□□ -1.51
PTPN9P43378 ZNF283-201ENST00000324461 2297 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 113.4 ms