Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 AC083843.2-201ENST00000568248 6253 ntBASIC5.07□□□□□ -1.6
SHMT2P34897 SLC1A3-216ENST00000613445 4030 ntTSL 5 BASIC5.07□□□□□ -1.6
SHMT2P34897 OR1L4-201ENST00000259466 936 ntAPPRIS P1 BASIC5.07□□□□□ -1.6
SHMT2P34897 RNASE9-201ENST00000338904 1049 ntAPPRIS P3 TSL 1 (best) BASIC5.07□□□□□ -1.6
SHMT2P34897 PRKACB-203ENST00000370684 869 ntTSL 5 BASIC5.07□□□□□ -1.6
SHMT2P34897 SVBP-202ENST00000372522 650 ntAPPRIS P1 TSL 3 BASIC5.07□□□□□ -1.6
SHMT2P34897 PAGE2B-202ENST00000374974 456 ntTSL 5 BASIC5.07□□□□□ -1.6
SHMT2P34897 DEFB135-201ENST00000382208 234 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
SHMT2P34897 MIR589-201ENST00000385238 99 ntBASIC5.07□□□□□ -1.6
SHMT2P34897 EI24P3-201ENST00000399046 1062 ntBASIC5.07□□□□□ -1.6
SHMT2P34897 AL445213.1-201ENST00000412589 747 ntBASIC5.07□□□□□ -1.6
SHMT2P34897 AC079760.2-203ENST00000418395 489 ntTSL 3 BASIC5.07□□□□□ -1.6
SHMT2P34897 MORF4L2-205ENST00000423833 717 ntTSL 5 BASIC5.07□□□□□ -1.6
SHMT2P34897 AL158835.2-201ENST00000430970 300 ntTSL 2 BASIC5.07□□□□□ -1.6
SHMT2P34897 AF127577.2-201ENST00000436429 824 ntTSL 3 BASIC5.07□□□□□ -1.6
SHMT2P34897 AF064858.2-201ENST00000440714 292 ntTSL 3 BASIC5.07□□□□□ -1.6
SHMT2P34897 AL589703.1-201ENST00000456032 256 ntTSL 5 BASIC5.07□□□□□ -1.6
SHMT2P34897 RPS18P6-201ENST00000476880 458 ntBASIC5.07□□□□□ -1.6
SHMT2P34897 RN7SL727P-201ENST00000482164 296 ntBASIC5.07□□□□□ -1.6
SHMT2P34897 RPL15P21-201ENST00000495592 567 ntBASIC5.07□□□□□ -1.6
SHMT2P34897 AC008638.1-201ENST00000506035 866 ntBASIC5.07□□□□□ -1.6
SHMT2P34897 AC079858.1-201ENST00000507842 448 ntTSL 3 BASIC5.07□□□□□ -1.6
SHMT2P34897 AC131953.1-201ENST00000513127 477 ntTSL 2 BASIC5.07□□□□□ -1.6
SHMT2P34897 ZNF346-IT1-201ENST00000515264 745 ntTSL 3 BASIC5.07□□□□□ -1.6
SHMT2P34897 AC008575.1-201ENST00000520401 694 ntAPPRIS P1 TSL 3 BASIC5.07□□□□□ -1.6
SHMT2P34897 AC134349.2-201ENST00000535136 910 ntBASIC5.07□□□□□ -1.6
SHMT2P34897 TRDN-205ENST00000546248 1179 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
SHMT2P34897 RNASE9-204ENST00000553541 1136 ntAPPRIS P3 TSL 1 (best) BASIC5.07□□□□□ -1.6
SHMT2P34897 RNASE9-206ENST00000554964 1101 ntAPPRIS P3 TSL 1 (best) BASIC5.07□□□□□ -1.6
SHMT2P34897 RNASE9-208ENST00000556208 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC5.07□□□□□ -1.6
SHMT2P34897 RNASE9-210ENST00000557209 1137 ntAPPRIS ALT2 TSL 1 (best) BASIC5.07□□□□□ -1.6
SHMT2P34897 AL161752.1-201ENST00000557721 263 ntTSL 2 BASIC5.07□□□□□ -1.6
SHMT2P34897 PDCD6IPP2-207ENST00000566321 1069 ntBASIC5.07□□□□□ -1.6
SHMT2P34897 MIR4472-2-201ENST00000582069 67 ntBASIC5.07□□□□□ -1.6
SHMT2P34897 TC2N-203ENST00000435962 5146 ntAPPRIS P1 TSL 2 BASIC5.07□□□□□ -1.6
SHMT2P34897 CXCL9-201ENST00000264888 2740 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
SHMT2P34897 OR12D2-207ENST00000642051 1496 ntAPPRIS P1 BASIC5.07□□□□□ -1.6
SHMT2P34897 TJP1-209ENST00000545208 5007 ntAPPRIS ALT2 TSL 5 BASIC5.06□□□□□ -1.6
SHMT2P34897 AC100778.3-201ENST00000580060 1750 ntBASIC5.06□□□□□ -1.6
SHMT2P34897 SLC26A5-208ENST00000393730 2498 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
SHMT2P34897 CEP164P1-202ENST00000456938 2472 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
SHMT2P34897 OR5AU1-203ENST00000641697 7755 ntAPPRIS P1 BASIC5.06□□□□□ -1.6
SHMT2P34897 PLEKHG7-201ENST00000344636 3868 ntTSL 5 BASIC5.06□□□□□ -1.6
SHMT2P34897 TMLHE-AS1-201ENST00000433624 1702 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
SHMT2P34897 C5orf51-204ENST00000612065 1391 ntTSL 5 BASIC5.06□□□□□ -1.6
SHMT2P34897 MYO3A-203ENST00000376302 2723 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
SHMT2P34897 RXFP1-206ENST00000460056 2735 ntTSL 2 BASIC5.06□□□□□ -1.6
SHMT2P34897 IL1RAPL1-202ENST00000378993 3667 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
SHMT2P34897 NUP37-201ENST00000251074 1203 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
SHMT2P34897 ELOC-201ENST00000284811 683 ntAPPRIS P1 TSL 3 BASIC5.06□□□□□ -1.6
SHMT2P34897 OR5B17-201ENST00000357377 946 ntAPPRIS P1 BASIC5.06□□□□□ -1.6
SHMT2P34897 RNA5SP90-201ENST00000364801 99 ntBASIC5.06□□□□□ -1.6
SHMT2P34897 DEFB136-201ENST00000382209 237 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
SHMT2P34897 RNU6ATAC21P-201ENST00000408656 126 ntBASIC5.06□□□□□ -1.6
SHMT2P34897 NPM1P40-201ENST00000412758 733 ntBASIC5.06□□□□□ -1.6
SHMT2P34897 AL390036.1-201ENST00000419428 734 ntTSL 5 BASIC5.06□□□□□ -1.6
SHMT2P34897 AC244033.1-201ENST00000426826 870 ntBASIC5.06□□□□□ -1.6
SHMT2P34897 RPS4XP16-201ENST00000427198 791 ntBASIC5.06□□□□□ -1.6
SHMT2P34897 AC005033.1-201ENST00000428904 813 ntBASIC5.06□□□□□ -1.6
SHMT2P34897 GAPDHP58-201ENST00000438477 1006 ntBASIC5.06□□□□□ -1.6
SHMT2P34897 VN1R96P-201ENST00000446052 858 ntBASIC5.06□□□□□ -1.6
SHMT2P34897 AC009127.1-201ENST00000467090 155 ntBASIC5.06□□□□□ -1.6
SHMT2P34897 AC005532.2-201ENST00000467154 373 ntBASIC5.06□□□□□ -1.6
SHMT2P34897 TSACC-207ENST00000470342 601 ntTSL 2 BASIC5.06□□□□□ -1.6
SHMT2P34897 BLNK-209ENST00000495266 440 ntTSL 5 BASIC5.06□□□□□ -1.6
SHMT2P34897 AC106864.2-201ENST00000505632 740 ntTSL 2 BASIC5.06□□□□□ -1.6
SHMT2P34897 AC115622.1-201ENST00000509628 587 ntTSL 3 BASIC5.06□□□□□ -1.6
SHMT2P34897 RNU6-513P-201ENST00000516104 104 ntBASIC5.06□□□□□ -1.6
SHMT2P34897 AP006245.2-201ENST00000522004 300 ntBASIC5.06□□□□□ -1.6
SHMT2P34897 KCTD21-AS1-206ENST00000532831 856 ntTSL 2 BASIC5.06□□□□□ -1.6
SHMT2P34897 RERGL-202ENST00000536890 367 ntTSL 3 BASIC5.06□□□□□ -1.6
SHMT2P34897 TNFSF11-205ENST00000544862 818 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
SHMT2P34897 PCED1B-AS1-210ENST00000552975 378 ntTSL 2 BASIC5.06□□□□□ -1.6
SHMT2P34897 AC087477.3-201ENST00000559214 552 ntTSL 4 BASIC5.06□□□□□ -1.6
SHMT2P34897 AC113418.1-201ENST00000569928 517 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
SHMT2P34897 UBL5-207ENST00000590068 390 ntAPPRIS P1 TSL 5 BASIC5.06□□□□□ -1.6
SHMT2P34897 AC004862.1-203ENST00000598433 1020 ntTSL 5 BASIC5.06□□□□□ -1.6
SHMT2P34897 TAS2R6P-201ENST00000605022 826 ntBASIC5.06□□□□□ -1.6
SHMT2P34897 SHMT1-211ENST00000618902 378 ntTSL 5 BASIC5.06□□□□□ -1.6
SHMT2P34897 AC099494.2-201ENST00000623371 978 ntBASIC5.06□□□□□ -1.6
SHMT2P34897 BMPR1APS1-201ENST00000403332 1598 ntBASIC5.06□□□□□ -1.6
SHMT2P34897 A1CF-207ENST00000395495 9400 ntTSL 5 BASIC5.06□□□□□ -1.6
SHMT2P34897 CKAP5-210ENST00000529230 7121 ntAPPRIS P1 TSL 5 BASIC5.06□□□□□ -1.6
SHMT2P34897 SDR42E1-201ENST00000328945 11566 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
SHMT2P34897 MUM1L1-202ENST00000357175 4173 ntAPPRIS P1 TSL 2 BASIC5.06□□□□□ -1.6
SHMT2P34897 TAX1BP1-203ENST00000409980 2629 ntAPPRIS ALT2 TSL 5 BASIC5.06□□□□□ -1.6
SHMT2P34897 CHRM2-203ENST00000445907 5918 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
SHMT2P34897 LINC00624-202ENST00000621316 3372 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
SHMT2P34897 DYNC2H1-201ENST00000334267 2984 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
SHMT2P34897 DGKH-210ENST00000628433 3449 ntTSL 2 BASIC5.05□□□□□ -1.6
SHMT2P34897 IREB2-201ENST00000258886 6354 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
SHMT2P34897 RPL23P2-201ENST00000320371 421 ntBASIC5.05□□□□□ -1.6
SHMT2P34897 ARGLU1-202ENST00000375926 821 ntAPPRIS P1 TSL 5 BASIC5.05□□□□□ -1.6
SHMT2P34897 RNU1-74P-201ENST00000384108 171 ntBASIC5.05□□□□□ -1.6
SHMT2P34897 RNU6-167P-201ENST00000384292 106 ntBASIC5.05□□□□□ -1.6
SHMT2P34897 TANK-203ENST00000402568 878 ntTSL 5 BASIC5.05□□□□□ -1.6
SHMT2P34897 MIR1182-201ENST00000408363 97 ntBASIC5.05□□□□□ -1.6
SHMT2P34897 U3.36-201ENST00000408418 213 ntBASIC5.05□□□□□ -1.6
SHMT2P34897 PRR21-201ENST00000408934 1170 ntAPPRIS P1 BASIC5.05□□□□□ -1.6
SHMT2P34897 RN7SKP273-201ENST00000411392 314 ntBASIC5.05□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 131 ms