Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 MGST2-204ENST00000506797 634 ntTSL 2 BASIC5.18□□□□□ -1.58
HMGA1P17096 AC097173.2-201ENST00000518701 474 ntTSL 3 BASIC5.18□□□□□ -1.58
HMGA1P17096 ATXN3-215ENST00000532032 1191 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
HMGA1P17096 KLRK1-204ENST00000540818 951 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
HMGA1P17096 LINC02402-201ENST00000550337 1212 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
HMGA1P17096 LINC02156-201ENST00000552320 483 ntTSL 2 BASIC5.18□□□□□ -1.58
HMGA1P17096 NPM1P5-201ENST00000557228 838 ntBASIC5.18□□□□□ -1.58
HMGA1P17096 AC066612.1-202ENST00000561094 518 ntTSL 5 BASIC5.18□□□□□ -1.58
HMGA1P17096 AC009139.2-201ENST00000569032 566 ntTSL 5 BASIC5.18□□□□□ -1.58
HMGA1P17096 MIR4527HG-203ENST00000600127 704 ntTSL 5 BASIC5.18□□□□□ -1.58
HMGA1P17096 MIR6780A-201ENST00000615089 68 ntBASIC5.18□□□□□ -1.58
HMGA1P17096 CCL4L2-215ENST00000620055 537 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
HMGA1P17096 CCL4L2-217ENST00000620250 667 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
HMGA1P17096 CCL4-203ENST00000621626 552 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
HMGA1P17096 CCL14-204ENST00000622526 472 ntTSL 3 BASIC5.18□□□□□ -1.58
HMGA1P17096 PHACTR2P1-202ENST00000636592 773 ntTSL 5 BASIC5.18□□□□□ -1.58
HMGA1P17096 LINC00989-201ENST00000508174 2080 ntTSL 3 BASIC5.18□□□□□ -1.58
HMGA1P17096 FCHO2-207ENST00000512348 2700 ntTSL 2 BASIC5.18□□□□□ -1.58
HMGA1P17096 AL354696.2-201ENST00000619407 1910 ntTSL 2 BASIC5.18□□□□□ -1.58
HMGA1P17096 AL137918.1-201ENST00000624542 1922 ntBASIC5.18□□□□□ -1.58
HMGA1P17096 ZNF347-201ENST00000334197 7960 ntAPPRIS P3 TSL 1 (best) BASIC5.18□□□□□ -1.58
HMGA1P17096 PMP2-201ENST00000256103 3608 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
HMGA1P17096 AP002512.4-202ENST00000641599 4530 ntBASIC5.18□□□□□ -1.58
HMGA1P17096 AC239809.3-214ENST00000496508 2513 ntTSL 2 BASIC5.18□□□□□ -1.58
HMGA1P17096 RNF145-201ENST00000274542 3364 ntTSL 2 BASIC5.18□□□□□ -1.58
HMGA1P17096 AC103740.1-201ENST00000558888 7427 ntTSL 2 BASIC5.17□□□□□ -1.58
HMGA1P17096 NPM1-203ENST00000393820 1598 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
HMGA1P17096 MFSD4BP1-201ENST00000513330 1552 ntBASIC5.17□□□□□ -1.58
HMGA1P17096 KCNIP4-202ENST00000382148 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC5.17□□□□□ -1.58
HMGA1P17096 NLRP3P1-201ENST00000622303 1785 ntBASIC5.17□□□□□ -1.58
HMGA1P17096 ZNF836-204ENST00000597252 3209 ntAPPRIS P2 TSL 2 BASIC5.17□□□□□ -1.58
HMGA1P17096 MTERF1-201ENST00000351870 1997 ntAPPRIS P3 TSL 1 (best) BASIC5.17□□□□□ -1.58
HMGA1P17096 NKIRAS1-209ENST00000614374 1612 ntAPPRIS P2 TSL 1 (best) BASIC5.17□□□□□ -1.58
HMGA1P17096 SLC26A7-210ENST00000617233 5257 ntAPPRIS P1 TSL 5 BASIC5.17□□□□□ -1.58
HMGA1P17096 OR10A5-201ENST00000299454 1054 ntAPPRIS P1 BASIC5.17□□□□□ -1.58
HMGA1P17096 FHIT-201ENST00000341848 174 ntTSL 3 BASIC5.17□□□□□ -1.58
HMGA1P17096 AC007618.1-201ENST00000366455 732 ntBASIC5.17□□□□□ -1.58
HMGA1P17096 MANSC4-201ENST00000381273 1023 ntAPPRIS P1 TSL 5 BASIC5.17□□□□□ -1.58
HMGA1P17096 MIR192-201ENST00000384915 110 ntBASIC5.17□□□□□ -1.58
HMGA1P17096 AL603962.1-201ENST00000413148 436 ntTSL 5 BASIC5.17□□□□□ -1.58
HMGA1P17096 RPS21P8-201ENST00000413365 247 ntBASIC5.17□□□□□ -1.58
HMGA1P17096 AC019050.1-201ENST00000418508 492 ntBASIC5.17□□□□□ -1.58
HMGA1P17096 AL354766.1-201ENST00000423396 542 ntBASIC5.17□□□□□ -1.58
HMGA1P17096 SCAND3P1-201ENST00000439854 1060 ntBASIC5.17□□□□□ -1.58
HMGA1P17096 AL691482.1-201ENST00000453255 87 ntBASIC5.17□□□□□ -1.58
HMGA1P17096 FO393408.1-201ENST00000458577 582 ntTSL 5 BASIC5.17□□□□□ -1.58
HMGA1P17096 AC104071.1-201ENST00000505636 602 ntTSL 3 BASIC5.17□□□□□ -1.58
HMGA1P17096 AC096773.1-201ENST00000506852 648 ntTSL 3 BASIC5.17□□□□□ -1.58
HMGA1P17096 AC026434.1-201ENST00000511474 454 ntTSL 3 BASIC5.17□□□□□ -1.58
HMGA1P17096 AC097460.1-204ENST00000515026 764 ntTSL 5 BASIC5.17□□□□□ -1.58
HMGA1P17096 RBPMS-207ENST00000519647 780 ntTSL 5 BASIC5.17□□□□□ -1.58
HMGA1P17096 AC104241.1-201ENST00000530039 628 ntTSL 3 BASIC5.17□□□□□ -1.58
HMGA1P17096 FAM222A-AS1-202ENST00000541460 751 ntTSL 4 BASIC5.17□□□□□ -1.58
HMGA1P17096 LINC01489-201ENST00000542689 605 ntTSL 5 BASIC5.17□□□□□ -1.58
HMGA1P17096 AC131274.1-201ENST00000582507 254 ntTSL 3 BASIC5.17□□□□□ -1.58
HMGA1P17096 CERS6-AS1-204ENST00000599361 536 ntTSL 4 BASIC5.17□□□□□ -1.58
HMGA1P17096 AL133406.3-201ENST00000606817 541 ntBASIC5.17□□□□□ -1.58
HMGA1P17096 AL022394.1-201ENST00000606979 292 ntBASIC5.17□□□□□ -1.58
HMGA1P17096 AC026367.3-201ENST00000619032 590 ntBASIC5.17□□□□□ -1.58
HMGA1P17096 AP000550.3-201ENST00000637734 379 ntBASIC5.17□□□□□ -1.58
HMGA1P17096 CCDC25-212ENST00000640944 261 ntTSL 5 BASIC5.17□□□□□ -1.58
HMGA1P17096 NPHP1-204ENST00000417665 2246 ntTSL 5 BASIC5.17□□□□□ -1.58
HMGA1P17096 ATRX-202ENST00000395603 10218 ntAPPRIS ALT2 TSL 1 (best) BASIC5.17□□□□□ -1.58
HMGA1P17096 DPY19L2P2-203ENST00000435536 1858 ntBASIC5.17□□□□□ -1.58
HMGA1P17096 ZNF652P1-201ENST00000442420 1309 ntBASIC5.17□□□□□ -1.58
HMGA1P17096 VIT-206ENST00000457137 1344 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
HMGA1P17096 OR5AS1-202ENST00000641320 7860 ntAPPRIS P1 BASIC5.17□□□□□ -1.58
HMGA1P17096 ITGAV-204ENST00000433736 3288 ntAPPRIS ALT2 TSL 2 BASIC5.17□□□□□ -1.58
HMGA1P17096 NDRG3-202ENST00000359675 2917 ntAPPRIS ALT1 TSL 1 (best) BASIC5.17□□□□□ -1.58
HMGA1P17096 POLR2B-213ENST00000639658 3300 ntTSL 5 BASIC5.17□□□□□ -1.58
HMGA1P17096 SLC15A2-201ENST00000295605 2379 ntTSL 2 BASIC5.16□□□□□ -1.58
HMGA1P17096 ABI2-204ENST00000295851 22209 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
HMGA1P17096 ACSL5-204ENST00000393081 3380 ntAPPRIS P1 TSL 5 BASIC5.16□□□□□ -1.58
HMGA1P17096 ZEB2-241ENST00000637304 9158 ntTSL 5 BASIC5.16□□□□□ -1.58
HMGA1P17096 RALGAPB-202ENST00000397040 8435 ntAPPRIS P3 TSL 1 (best) BASIC5.16□□□□□ -1.58
HMGA1P17096 CKAP5-210ENST00000529230 7121 ntAPPRIS P1 TSL 5 BASIC5.16□□□□□ -1.58
HMGA1P17096 ATP1B4-202ENST00000361319 3856 ntAPPRIS P3 TSL 1 (best) BASIC5.16□□□□□ -1.58
HMGA1P17096 AC079741.1-201ENST00000321498 212 ntBASIC5.16□□□□□ -1.58
HMGA1P17096 LY6G5C-210ENST00000383237 674 ntAPPRIS P2 TSL 1 (best) BASIC5.16□□□□□ -1.58
HMGA1P17096 AC068483.1-201ENST00000413403 660 ntTSL 3 BASIC5.16□□□□□ -1.58
HMGA1P17096 AL807761.1-201ENST00000417622 171 ntBASIC5.16□□□□□ -1.58
HMGA1P17096 AL606970.4-201ENST00000424343 455 ntTSL 2 BASIC5.16□□□□□ -1.58
HMGA1P17096 AL445644.1-201ENST00000436524 751 ntTSL 2 BASIC5.16□□□□□ -1.58
HMGA1P17096 AL034380.1-201ENST00000448791 306 ntTSL 3 BASIC5.16□□□□□ -1.58
HMGA1P17096 SLC25A18P1-201ENST00000449385 454 ntBASIC5.16□□□□□ -1.58
HMGA1P17096 AL359715.2-201ENST00000452402 682 ntTSL 2 BASIC5.16□□□□□ -1.58
HMGA1P17096 AC117513.1-201ENST00000462792 766 ntTSL 2 BASIC5.16□□□□□ -1.58
HMGA1P17096 OR51A1P-201ENST00000511110 946 ntBASIC5.16□□□□□ -1.58
HMGA1P17096 IGKV1-32-201ENST00000519290 311 ntBASIC5.16□□□□□ -1.58
HMGA1P17096 FAM174B-202ENST00000553393 495 ntTSL 2 BASIC5.16□□□□□ -1.58
HMGA1P17096 AC079075.1-201ENST00000559543 878 ntBASIC5.16□□□□□ -1.58
HMGA1P17096 MTRNR2L12-201ENST00000600213 1049 ntAPPRIS P1 BASIC5.16□□□□□ -1.58
HMGA1P17096 AC068790.7-201ENST00000602347 528 ntBASIC5.16□□□□□ -1.58
HMGA1P17096 AL512782.1-201ENST00000603093 364 ntBASIC5.16□□□□□ -1.58
HMGA1P17096 AC018695.5-201ENST00000605872 315 ntBASIC5.16□□□□□ -1.58
HMGA1P17096 THRA1/BTR-204ENST00000621191 513 ntTSL 5 BASIC5.16□□□□□ -1.58
HMGA1P17096 CR381572.2-201ENST00000624852 397 ntBASIC5.16□□□□□ -1.58
HMGA1P17096 SYCP1-209ENST00000613524 3034 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
HMGA1P17096 APAF1-205ENST00000547045 3744 ntAPPRIS ALT1 TSL 1 (best) BASIC5.16□□□□□ -1.58
HMGA1P17096 AC113146.2-201ENST00000560743 1961 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 71.5 ms