Protein–RNA interactions for Protein: Q9H4W6

EBF3, Transcription factor COE3, humanhuman

Predictions only

Length 596 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EBF3Q9H4W6 AP003049.1-201ENST00000529418 457 ntBASIC5.72□□□□□ -1.49
EBF3Q9H4W6 TRDV3-201ENST00000535880 425 ntAPPRIS P1 BASIC5.72□□□□□ -1.49
EBF3Q9H4W6 HMGN2P6-201ENST00000551091 273 ntBASIC5.72□□□□□ -1.49
EBF3Q9H4W6 AC008056.2-201ENST00000553812 551 ntTSL 5 BASIC5.72□□□□□ -1.49
EBF3Q9H4W6 AC024267.4-201ENST00000580782 683 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
EBF3Q9H4W6 AC100775.1-201ENST00000590942 522 ntTSL 3 BASIC5.72□□□□□ -1.49
EBF3Q9H4W6 CDC42EP3P1-201ENST00000601004 764 ntBASIC5.72□□□□□ -1.49
EBF3Q9H4W6 AC013244.3-201ENST00000605614 388 ntBASIC5.72□□□□□ -1.49
EBF3Q9H4W6 AL022394.1-201ENST00000606979 292 ntBASIC5.72□□□□□ -1.49
EBF3Q9H4W6 AC117490.2-201ENST00000610042 594 ntBASIC5.72□□□□□ -1.49
EBF3Q9H4W6 AC015712.7-201ENST00000615211 635 ntBASIC5.72□□□□□ -1.49
EBF3Q9H4W6 AP002505.2-201ENST00000623585 696 ntBASIC5.72□□□□□ -1.49
EBF3Q9H4W6 AC120349.3-201ENST00000624377 529 ntBASIC5.72□□□□□ -1.49
EBF3Q9H4W6 AC074387.1-201ENST00000632044 823 ntTSL 2 BASIC5.72□□□□□ -1.49
EBF3Q9H4W6 AC009951.2-201ENST00000634873 644 ntTSL 5 BASIC5.72□□□□□ -1.49
EBF3Q9H4W6 AC002525.1-201ENST00000624392 1622 ntBASIC5.72□□□□□ -1.49
EBF3Q9H4W6 CFAP47-202ENST00000313548 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC5.72□□□□□ -1.49
EBF3Q9H4W6 AC068446.1-201ENST00000556425 1549 ntBASIC5.72□□□□□ -1.49
EBF3Q9H4W6 MTO1-212ENST00000498286 10857 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
EBF3Q9H4W6 SLC12A1-201ENST00000330289 1764 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
EBF3Q9H4W6 ZNF107-205ENST00000613690 5589 ntAPPRIS ALT2 TSL 5 BASIC5.72□□□□□ -1.49
EBF3Q9H4W6 NAV2-AS5-201ENST00000528726 3307 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
EBF3Q9H4W6 AC011933.2-201ENST00000578539 2790 ntBASIC5.72□□□□□ -1.49
EBF3Q9H4W6 RAD17-220ENST00000616683 3057 ntTSL 1 (best) BASIC5.71□□□□□ -1.49
EBF3Q9H4W6 CYP3A43-204ENST00000354829 1709 ntAPPRIS ALT1 TSL 1 (best) BASIC5.71□□□□□ -1.49
EBF3Q9H4W6 KIAA0391-209ENST00000604948 1706 ntAPPRIS ALT2 TSL 2 BASIC5.71□□□□□ -1.49
EBF3Q9H4W6 AC007750.1-202ENST00000418968 4098 ntTSL 5 BASIC5.71□□□□□ -1.49
EBF3Q9H4W6 SMARCE1-208ENST00000474246 2124 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
EBF3Q9H4W6 LINC01541-202ENST00000568095 3105 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
EBF3Q9H4W6 LEPROT-206ENST00000613538 4625 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
EBF3Q9H4W6 PLCXD3-201ENST00000328457 7538 ntAPPRIS P1 TSL 5 BASIC5.71□□□□□ -1.5
EBF3Q9H4W6 AC239868.2-201ENST00000564237 4527 ntBASIC5.71□□□□□ -1.5
EBF3Q9H4W6 TRPC4-204ENST00000379673 2760 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
EBF3Q9H4W6 ZNF679-201ENST00000255746 1297 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
EBF3Q9H4W6 RPL23P2-201ENST00000320371 421 ntBASIC5.71□□□□□ -1.5
EBF3Q9H4W6 CFHR2-201ENST00000367415 1059 ntAPPRIS P2 TSL 1 (best) BASIC5.71□□□□□ -1.5
EBF3Q9H4W6 SSX3-202ENST00000376893 800 ntTSL 2 BASIC5.71□□□□□ -1.5
EBF3Q9H4W6 MTND4P13-201ENST00000402078 1023 ntBASIC5.71□□□□□ -1.5
EBF3Q9H4W6 GNG12-AS1-202ENST00000414904 796 ntTSL 3 BASIC5.71□□□□□ -1.5
EBF3Q9H4W6 AC017078.1-201ENST00000416146 368 ntBASIC5.71□□□□□ -1.5
EBF3Q9H4W6 VPS26BP1-201ENST00000417155 755 ntBASIC5.71□□□□□ -1.5
EBF3Q9H4W6 LINC01945-201ENST00000419784 840 ntTSL 2 BASIC5.71□□□□□ -1.5
EBF3Q9H4W6 AL590999.1-205ENST00000420293 440 ntTSL 3 BASIC5.71□□□□□ -1.5
EBF3Q9H4W6 AC013401.1-202ENST00000422017 626 ntTSL 2 BASIC5.71□□□□□ -1.5
EBF3Q9H4W6 AL391069.1-201ENST00000422153 358 ntTSL 3 BASIC5.71□□□□□ -1.5
EBF3Q9H4W6 SETP9-201ENST00000423837 832 ntBASIC5.71□□□□□ -1.5
EBF3Q9H4W6 HMGN2P27-201ENST00000427352 270 ntBASIC5.71□□□□□ -1.5
EBF3Q9H4W6 TSSK4-203ENST00000428351 576 ntTSL 2 BASIC5.71□□□□□ -1.5
EBF3Q9H4W6 TEX41-206ENST00000432608 661 ntTSL 3 BASIC5.71□□□□□ -1.5
EBF3Q9H4W6 AL512625.3-204ENST00000438699 1031 ntTSL 5 BASIC5.71□□□□□ -1.5
EBF3Q9H4W6 AC092106.1-201ENST00000444291 373 ntBASIC5.71□□□□□ -1.5
EBF3Q9H4W6 RN7SL197P-201ENST00000466981 299 ntBASIC5.71□□□□□ -1.5
EBF3Q9H4W6 AC092590.1-201ENST00000471672 737 ntTSL 3 BASIC5.71□□□□□ -1.5
EBF3Q9H4W6 RPS18P6-201ENST00000476880 458 ntBASIC5.71□□□□□ -1.5
EBF3Q9H4W6 RPSAP50-201ENST00000481955 852 ntBASIC5.71□□□□□ -1.5
EBF3Q9H4W6 RPS7P6-201ENST00000485777 579 ntBASIC5.71□□□□□ -1.5
EBF3Q9H4W6 MYLK-AS2-201ENST00000510827 500 ntTSL 3 BASIC5.71□□□□□ -1.5
EBF3Q9H4W6 AP003501.1-201ENST00000524453 744 ntTSL 3 BASIC5.71□□□□□ -1.5
EBF3Q9H4W6 AC130364.2-201ENST00000528639 604 ntBASIC5.71□□□□□ -1.5
EBF3Q9H4W6 KCTD21-AS1-206ENST00000532831 856 ntTSL 2 BASIC5.71□□□□□ -1.5
EBF3Q9H4W6 OR4A43P-201ENST00000532938 908 ntBASIC5.71□□□□□ -1.5
EBF3Q9H4W6 AP001266.2-201ENST00000534505 464 ntTSL 4 BASIC5.71□□□□□ -1.5
EBF3Q9H4W6 VBP1-203ENST00000535916 944 ntTSL 2 BASIC5.71□□□□□ -1.5
EBF3Q9H4W6 DEFB109F-202ENST00000542600 509 ntTSL 2 BASIC5.71□□□□□ -1.5
EBF3Q9H4W6 AC139697.1-201ENST00000548429 745 ntBASIC5.71□□□□□ -1.5
EBF3Q9H4W6 NELL2-211ENST00000548826 559 ntTSL 2 BASIC5.71□□□□□ -1.5
EBF3Q9H4W6 AL359219.2-201ENST00000555184 348 ntBASIC5.71□□□□□ -1.5
EBF3Q9H4W6 AC105339.2-201ENST00000558342 1091 ntTSL 3 BASIC5.71□□□□□ -1.5
EBF3Q9H4W6 LINC01904-201ENST00000564872 861 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
EBF3Q9H4W6 AC106729.1-201ENST00000567777 466 ntTSL 3 BASIC5.71□□□□□ -1.5
EBF3Q9H4W6 ABHD15-AS1-201ENST00000581474 187 ntTSL 5 BASIC5.71□□□□□ -1.5
EBF3Q9H4W6 AC010503.3-201ENST00000594355 540 ntBASIC5.71□□□□□ -1.5
EBF3Q9H4W6 AC211433.1-206ENST00000595409 733 ntTSL 5 BASIC5.71□□□□□ -1.5
EBF3Q9H4W6 AC006115.2-201ENST00000596823 202 ntBASIC5.71□□□□□ -1.5
EBF3Q9H4W6 BNIP3P38-201ENST00000601117 544 ntBASIC5.71□□□□□ -1.5
EBF3Q9H4W6 AC025165.5-201ENST00000602802 578 ntBASIC5.71□□□□□ -1.5
EBF3Q9H4W6 AC087468.1-201ENST00000604365 630 ntBASIC5.71□□□□□ -1.5
EBF3Q9H4W6 AC024940.4-201ENST00000605507 246 ntBASIC5.71□□□□□ -1.5
EBF3Q9H4W6 OR8H1-202ENST00000610894 927 ntAPPRIS ALT1 BASIC5.71□□□□□ -1.5
EBF3Q9H4W6 CPNE4-214ENST00000617767 3556 ntTSL 2 BASIC5.71□□□□□ -1.5
EBF3Q9H4W6 GABRG2-203ENST00000414552 3927 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
EBF3Q9H4W6 TNFSF4-202ENST00000367718 3429 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
EBF3Q9H4W6 CUBN-202ENST00000377833 11949 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
EBF3Q9H4W6 AC099811.1-201ENST00000597755 1496 ntTSL 3 BASIC5.71□□□□□ -1.5
EBF3Q9H4W6 SPARCL1-202ENST00000418378 2994 ntAPPRIS P1 TSL 5 BASIC5.7□□□□□ -1.5
EBF3Q9H4W6 AC005703.1-201ENST00000431343 1773 ntTSL 2 BASIC5.7□□□□□ -1.5
EBF3Q9H4W6 AL078595.2-201ENST00000605309 1780 ntBASIC5.7□□□□□ -1.5
EBF3Q9H4W6 IL15-204ENST00000477265 6026 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
EBF3Q9H4W6 VPS50-202ENST00000305866 3613 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
EBF3Q9H4W6 LINC02355-201ENST00000503100 2520 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
EBF3Q9H4W6 UQCR10-201ENST00000330029 916 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
EBF3Q9H4W6 CENPW-203ENST00000368328 750 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
EBF3Q9H4W6 PLEKHA1-203ENST00000368990 14010 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
EBF3Q9H4W6 MIR7-1-201ENST00000384871 110 ntBASIC5.7□□□□□ -1.5
EBF3Q9H4W6 AL009179.1-201ENST00000406085 265 ntBASIC5.7□□□□□ -1.5
EBF3Q9H4W6 RNU6-564P-201ENST00000410983 104 ntBASIC5.7□□□□□ -1.5
EBF3Q9H4W6 GTF2IP5-201ENST00000414608 731 ntBASIC5.7□□□□□ -1.5
EBF3Q9H4W6 AL357078.2-201ENST00000416486 427 ntBASIC5.7□□□□□ -1.5
EBF3Q9H4W6 AL592402.1-201ENST00000417161 440 ntTSL 4 BASIC5.7□□□□□ -1.5
EBF3Q9H4W6 Z99289.1-206ENST00000425503 393 ntTSL 3 BASIC5.7□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 101 ms