Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 AC008040.1-202ENST00000483289 6251 ntTSL 1 (best) BASIC1.59□□□□□ -2.15
SYNE1Q8NF91 SPTLC3-201ENST00000399002 6169 ntAPPRIS P1 TSL 1 (best) BASIC1.59□□□□□ -2.15
SYNE1Q8NF91 PHF20L1-210ENST00000395390 5900 ntTSL 5 BASIC1.59□□□□□ -2.15
SYNE1Q8NF91 ELAVL4-202ENST00000371819 2467 ntAPPRIS ALT1 TSL 2 BASIC1.59□□□□□ -2.15
SYNE1Q8NF91 CDC123-202ENST00000378900 933 ntTSL 5 BASIC1.59□□□□□ -2.15
SYNE1Q8NF91 IGLJ6-201ENST00000390328 70 ntAPPRIS P1 BASIC1.59□□□□□ -2.15
SYNE1Q8NF91 UBE2L5P-201ENST00000436446 465 ntAPPRIS P1 BASIC1.59□□□□□ -2.15
SYNE1Q8NF91 ATXN3-206ENST00000502250 1259 ntTSL 1 (best) BASIC1.59□□□□□ -2.15
SYNE1Q8NF91 AF107885.2-202ENST00000557653 448 ntTSL 5 BASIC1.59□□□□□ -2.15
SYNE1Q8NF91 AC087500.2-201ENST00000575056 498 ntTSL 5 BASIC1.59□□□□□ -2.15
SYNE1Q8NF91 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC1.59□□□□□ -2.15
SYNE1Q8NF91 NSD1-201ENST00000347982 7688 ntTSL 1 (best) BASIC1.59□□□□□ -2.15
SYNE1Q8NF91 HECW2-201ENST00000260983 11809 ntAPPRIS P1 TSL 1 (best) BASIC1.59□□□□□ -2.15
SYNE1Q8NF91 OR4F13P-202ENST00000560066 2054 ntBASIC1.59□□□□□ -2.15
SYNE1Q8NF91 BCORP1-203ENST00000513194 5093 ntBASIC1.59□□□□□ -2.15
SYNE1Q8NF91 KIF16B-202ENST00000355755 606 ntTSL 1 (best) BASIC1.59□□□□□ -2.15
SYNE1Q8NF91 SNORD1C-201ENST00000363315 78 ntBASIC1.59□□□□□ -2.15
SYNE1Q8NF91 AC015983.1-201ENST00000441577 373 ntBASIC1.59□□□□□ -2.15
SYNE1Q8NF91 RPS11P7-201ENST00000442125 465 ntBASIC1.59□□□□□ -2.15
SYNE1Q8NF91 CEACAMP9-201ENST00000442990 513 ntBASIC1.59□□□□□ -2.15
SYNE1Q8NF91 LINC01645-201ENST00000451341 491 ntTSL 3 BASIC1.59□□□□□ -2.15
SYNE1Q8NF91 AL354771.1-201ENST00000452178 602 ntTSL 5 BASIC1.59□□□□□ -2.15
SYNE1Q8NF91 AC091976.1-201ENST00000458002 448 ntTSL 3 BASIC1.59□□□□□ -2.15
SYNE1Q8NF91 AC004052.1-201ENST00000514327 567 ntTSL 4 BASIC1.59□□□□□ -2.15
SYNE1Q8NF91 TRAV30-201ENST00000557168 337 ntAPPRIS P1 BASIC1.59□□□□□ -2.15
SYNE1Q8NF91 MIR4715-201ENST00000584117 79 ntBASIC1.59□□□□□ -2.15
SYNE1Q8NF91 AC005392.3-201ENST00000607109 459 ntTSL 2 BASIC1.59□□□□□ -2.15
SYNE1Q8NF91 AP001521.2-201ENST00000608772 546 ntBASIC1.59□□□□□ -2.15
SYNE1Q8NF91 AC243654.3-201ENST00000617427 735 ntTSL 5 BASIC1.59□□□□□ -2.15
SYNE1Q8NF91 KLHL28-201ENST00000355081 2177 ntTSL 1 (best) BASIC1.59□□□□□ -2.16
SYNE1Q8NF91 DYNC1I2-207ENST00000410079 2159 ntTSL 2 BASIC1.59□□□□□ -2.16
SYNE1Q8NF91 AC003985.2-201ENST00000562268 1669 ntBASIC1.59□□□□□ -2.16
SYNE1Q8NF91 FBXL13-208ENST00000456695 1605 ntAPPRIS P1 TSL 1 (best) BASIC1.59□□□□□ -2.16
SYNE1Q8NF91 ZNF534-202ENST00000332323 2086 ntAPPRIS P4 TSL 1 (best) BASIC1.59□□□□□ -2.16
SYNE1Q8NF91 KCNA2-209ENST00000639048 10836 ntTSL 5 BASIC1.59□□□□□ -2.16
SYNE1Q8NF91 TERB1-203ENST00000558713 2257 ntAPPRIS P1 TSL 5 BASIC1.59□□□□□ -2.16
SYNE1Q8NF91 RASGEF1B-207ENST00000509081 3016 ntAPPRIS ALT1 TSL 5 BASIC1.59□□□□□ -2.16
SYNE1Q8NF91 WDR63-201ENST00000294664 2995 ntAPPRIS P3 TSL 1 (best) BASIC1.59□□□□□ -2.16
SYNE1Q8NF91 SPINK5-202ENST00000359874 3656 ntAPPRIS ALT2 TSL 1 (best) BASIC1.59□□□□□ -2.16
SYNE1Q8NF91 GPAM-201ENST00000348367 6371 ntAPPRIS P1 TSL 1 (best) BASIC1.59□□□□□ -2.16
SYNE1Q8NF91 LAMTOR3-201ENST00000226522 1220 ntTSL 3 BASIC1.59□□□□□ -2.16
SYNE1Q8NF91 SPATA42-201ENST00000369989 535 ntTSL 1 (best) BASIC1.59□□□□□ -2.16
SYNE1Q8NF91 SNORA2.3-201ENST00000383920 135 ntBASIC1.59□□□□□ -2.16
SYNE1Q8NF91 AC092106.1-201ENST00000444291 373 ntBASIC1.59□□□□□ -2.16
SYNE1Q8NF91 AL160271.1-201ENST00000444708 829 ntTSL 3 BASIC1.59□□□□□ -2.16
SYNE1Q8NF91 AL592431.1-201ENST00000451090 317 ntTSL 3 BASIC1.59□□□□□ -2.16
SYNE1Q8NF91 AL035446.1-201ENST00000455011 453 ntTSL 5 BASIC1.59□□□□□ -2.16
SYNE1Q8NF91 LINC02271-202ENST00000506379 596 ntTSL 4 BASIC1.59□□□□□ -2.16
SYNE1Q8NF91 AP003031.2-202ENST00000533590 572 ntTSL 4 BASIC1.59□□□□□ -2.16
SYNE1Q8NF91 BNIP3P1-201ENST00000547295 580 ntBASIC1.59□□□□□ -2.16
SYNE1Q8NF91 ATP5J2P6-201ENST00000565203 266 ntBASIC1.59□□□□□ -2.16
SYNE1Q8NF91 ELSPBP1-205ENST00000597519 557 ntTSL 3 BASIC1.59□□□□□ -2.16
SYNE1Q8NF91 IGF2BP2-AS1-202ENST00000456447 1531 ntTSL 1 (best) BASIC1.59□□□□□ -2.16
SYNE1Q8NF91 FANCD2-203ENST00000419585 5185 ntAPPRIS ALT2 TSL 1 (best) BASIC1.59□□□□□ -2.16
SYNE1Q8NF91 AC004784.1-201ENST00000635495 1833 ntTSL 5 BASIC1.59□□□□□ -2.16
SYNE1Q8NF91 SKIL-201ENST00000259119 3057 ntAPPRIS P1 TSL 1 (best) BASIC1.59□□□□□ -2.16
SYNE1Q8NF91 TCF4-284ENST00000637169 7553 ntTSL 5 BASIC1.59□□□□□ -2.16
SYNE1Q8NF91 DCC-203ENST00000442544 10206 ntAPPRIS P1 TSL 1 (best) BASIC1.59□□□□□ -2.16
SYNE1Q8NF91 CNGB3-201ENST00000320005 4347 ntAPPRIS P1 TSL 1 (best) BASIC1.59□□□□□ -2.16
SYNE1Q8NF91 Z82217.1-201ENST00000625157 8149 ntBASIC1.59□□□□□ -2.16
SYNE1Q8NF91 TRAV21-201ENST00000390449 343 ntAPPRIS P1 BASIC1.59□□□□□ -2.16
SYNE1Q8NF91 AL451062.2-201ENST00000427515 271 ntBASIC1.59□□□□□ -2.16
SYNE1Q8NF91 CDC27P1-201ENST00000445384 715 ntBASIC1.59□□□□□ -2.16
SYNE1Q8NF91 BBIP1-207ENST00000448814 2119 ntTSL 1 (best) BASIC1.59□□□□□ -2.16
SYNE1Q8NF91 AC018680.1-201ENST00000513332 875 ntTSL 3 BASIC1.59□□□□□ -2.16
SYNE1Q8NF91 EIF3KP3-201ENST00000514461 639 ntBASIC1.59□□□□□ -2.16
SYNE1Q8NF91 UBE2Q2P10-201ENST00000514854 900 ntBASIC1.59□□□□□ -2.16
SYNE1Q8NF91 GCSHP4-201ENST00000538792 439 ntBASIC1.59□□□□□ -2.16
SYNE1Q8NF91 BLOC1S6-209ENST00000565409 616 ntTSL 4 BASIC1.59□□□□□ -2.16
SYNE1Q8NF91 MIR92B-201ENST00000607575 96 ntBASIC1.59□□□□□ -2.16
SYNE1Q8NF91 SLC8A1-AS1-218ENST00000610721 956 ntTSL 5 BASIC1.59□□□□□ -2.16
SYNE1Q8NF91 AP003789.1-201ENST00000617737 605 ntBASIC1.59□□□□□ -2.16
SYNE1Q8NF91 IPO5-229ENST00000631030 192 ntTSL 5 BASIC1.59□□□□□ -2.16
SYNE1Q8NF91 SMCO1-201ENST00000397537 1812 ntAPPRIS P1 TSL 1 (best) BASIC1.59□□□□□ -2.16
SYNE1Q8NF91 AC011604.2-201ENST00000381541 2268 ntAPPRIS ALT2 TSL 2 BASIC1.59□□□□□ -2.16
SYNE1Q8NF91 PDE10A-201ENST00000366882 8233 ntAPPRIS P3 TSL 5 BASIC1.59□□□□□ -2.16
SYNE1Q8NF91 MEF2C-249ENST00000637481 6088 ntTSL 5 BASIC1.59□□□□□ -2.16
SYNE1Q8NF91 AC114947.2-201ENST00000565748 2125 ntBASIC1.59□□□□□ -2.16
SYNE1Q8NF91 BCLAF1-214ENST00000531224 7263 ntAPPRIS P3 TSL 1 (best) BASIC1.59□□□□□ -2.16
SYNE1Q8NF91 INO80D-201ENST00000403263 14136 ntAPPRIS P1 TSL 5 BASIC1.59□□□□□ -2.16
SYNE1Q8NF91 RPL23AP17-201ENST00000401064 499 ntBASIC1.59□□□□□ -2.16
SYNE1Q8NF91 AC096559.1-201ENST00000414086 399 ntTSL 2 BASIC1.59□□□□□ -2.16
SYNE1Q8NF91 AC098820.3-201ENST00000414135 976 ntTSL 3 BASIC1.59□□□□□ -2.16
SYNE1Q8NF91 FAM96AP1-201ENST00000430879 482 ntBASIC1.59□□□□□ -2.16
SYNE1Q8NF91 RN7SL188P-201ENST00000469842 285 ntBASIC1.59□□□□□ -2.16
SYNE1Q8NF91 HMGB1P23-201ENST00000518743 568 ntBASIC1.59□□□□□ -2.16
SYNE1Q8NF91 PWRN1-204ENST00000565241 480 ntTSL 2 BASIC1.59□□□□□ -2.16
SYNE1Q8NF91 ZFP30-209ENST00000589018 444 ntTSL 5 BASIC1.59□□□□□ -2.16
SYNE1Q8NF91 AC006115.2-201ENST00000596823 202 ntBASIC1.59□□□□□ -2.16
SYNE1Q8NF91 AC012414.7-202ENST00000622705 1090 ntBASIC1.59□□□□□ -2.16
SYNE1Q8NF91 MAPK10-350ENST00000641777 965 ntBASIC1.59□□□□□ -2.16
SYNE1Q8NF91 RUFY3-201ENST00000226328 4233 ntTSL 1 (best) BASIC1.59□□□□□ -2.16
SYNE1Q8NF91 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC1.58□□□□□ -2.16
SYNE1Q8NF91 ZC3H12B-201ENST00000338957 7256 ntAPPRIS P1 TSL 1 (best) BASIC1.58□□□□□ -2.16
SYNE1Q8NF91 BNIP2-202ENST00000415213 1509 ntTSL 2 BASIC1.58□□□□□ -2.16
SYNE1Q8NF91 AC091045.1-201ENST00000561460 2277 ntTSL 5 BASIC1.58□□□□□ -2.16
SYNE1Q8NF91 AC010132.2-201ENST00000295493 1043 ntBASIC1.58□□□□□ -2.16
SYNE1Q8NF91 LINC01047-201ENST00000415193 778 ntTSL 5 BASIC1.58□□□□□ -2.16
SYNE1Q8NF91 AL591468.1-201ENST00000417932 573 ntTSL 3 BASIC1.58□□□□□ -2.16
SYNE1Q8NF91 AL591719.2-201ENST00000437400 386 ntTSL 3 BASIC1.58□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 74.9 ms