Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 U3.25-201ENST00000391209 220 ntBASIC4.71□□□□□ -1.66
SKA3Q8IX90 AC009804.1-201ENST00000400949 179 ntBASIC4.71□□□□□ -1.66
SKA3Q8IX90 AC092111.3-201ENST00000402465 496 ntAPPRIS P1 TSL 2 BASIC4.71□□□□□ -1.66
SKA3Q8IX90 RNU6ATAC18P-201ENST00000408413 101 ntBASIC4.71□□□□□ -1.66
SKA3Q8IX90 AL390774.1-201ENST00000411924 246 ntBASIC4.71□□□□□ -1.66
SKA3Q8IX90 CASKP1-201ENST00000412870 582 ntBASIC4.71□□□□□ -1.66
SKA3Q8IX90 AC109779.1-201ENST00000414475 573 ntTSL 5 BASIC4.71□□□□□ -1.66
SKA3Q8IX90 CFLAR-AS1-201ENST00000415011 1072 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
SKA3Q8IX90 OXSM-202ENST00000420173 1256 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
SKA3Q8IX90 AC012519.1-201ENST00000424588 610 ntBASIC4.71□□□□□ -1.66
SKA3Q8IX90 IL23R-203ENST00000425614 1295 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
SKA3Q8IX90 DSTNP5-201ENST00000427921 523 ntBASIC4.71□□□□□ -1.66
SKA3Q8IX90 AL049749.1-201ENST00000430281 632 ntTSL 2 BASIC4.71□□□□□ -1.66
SKA3Q8IX90 LINC00894-203ENST00000432696 298 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
SKA3Q8IX90 CYCSP6-201ENST00000434498 302 ntBASIC4.71□□□□□ -1.66
SKA3Q8IX90 LINC01133-202ENST00000443364 1266 ntTSL 5 BASIC4.71□□□□□ -1.66
SKA3Q8IX90 AL442224.1-201ENST00000443771 391 ntTSL 2 BASIC4.71□□□□□ -1.66
SKA3Q8IX90 AL096855.1-202ENST00000444276 439 ntTSL 2 BASIC4.71□□□□□ -1.66
SKA3Q8IX90 LINC01765-201ENST00000448680 491 ntTSL 2 BASIC4.71□□□□□ -1.66
SKA3Q8IX90 TAAR4P-201ENST00000454843 1039 ntBASIC4.71□□□□□ -1.66
SKA3Q8IX90 AC007386.1-201ENST00000455212 582 ntBASIC4.71□□□□□ -1.66
SKA3Q8IX90 OR7L1P-201ENST00000456181 380 ntBASIC4.71□□□□□ -1.66
SKA3Q8IX90 AC108693.1-201ENST00000496068 432 ntBASIC4.71□□□□□ -1.66
SKA3Q8IX90 AC093890.1-201ENST00000502554 540 ntBASIC4.71□□□□□ -1.66
SKA3Q8IX90 AC105020.2-201ENST00000564683 572 ntTSL 5 BASIC4.71□□□□□ -1.66
SKA3Q8IX90 RN7SL356P-201ENST00000582228 248 ntBASIC4.71□□□□□ -1.66
SKA3Q8IX90 AC009027.1-201ENST00000604510 479 ntBASIC4.71□□□□□ -1.66
SKA3Q8IX90 AC109583.2-201ENST00000617367 129 ntBASIC4.71□□□□□ -1.66
SKA3Q8IX90 AC009093.5-201ENST00000620963 359 ntTSL 2 BASIC4.71□□□□□ -1.66
SKA3Q8IX90 AP003400.3-201ENST00000624904 346 ntBASIC4.71□□□□□ -1.66
SKA3Q8IX90 SAMMSON-209ENST00000641222 1100 ntBASIC4.71□□□□□ -1.66
SKA3Q8IX90 WDHD1-201ENST00000360586 5996 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
SKA3Q8IX90 EPB41L2-226ENST00000530757 4360 ntTSL 2 BASIC4.71□□□□□ -1.66
SKA3Q8IX90 ADGRG4-201ENST00000370652 9820 ntAPPRIS P2 TSL 5 BASIC4.71□□□□□ -1.66
SKA3Q8IX90 SEC31A-201ENST00000264405 3447 ntTSL 2 BASIC4.71□□□□□ -1.66
SKA3Q8IX90 ZBTB38-220ENST00000514251 7683 ntAPPRIS P1 TSL 2 BASIC4.71□□□□□ -1.66
SKA3Q8IX90 SMAD5-212ENST00000545620 6937 ntAPPRIS P1 TSL 5 BASIC4.71□□□□□ -1.66
SKA3Q8IX90 ANXA1-201ENST00000257497 1509 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
SKA3Q8IX90 CYP4Z2P-201ENST00000423332 1512 ntBASIC4.71□□□□□ -1.66
SKA3Q8IX90 FOXP2-202ENST00000360232 1412 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
SKA3Q8IX90 GRAMD1C-208ENST00000472026 1876 ntTSL 2 BASIC4.71□□□□□ -1.66
SKA3Q8IX90 SLC44A5-201ENST00000370855 4406 ntAPPRIS P3 TSL 1 (best) BASIC4.71□□□□□ -1.66
SKA3Q8IX90 LINC01847-202ENST00000523311 1762 ntTSL 5 BASIC4.7□□□□□ -1.66
SKA3Q8IX90 FCRL2-203ENST00000368181 1669 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
SKA3Q8IX90 VPS13D-214ENST00000620676 16320 ntAPPRIS P4 TSL 1 (best) BASIC4.7□□□□□ -1.66
SKA3Q8IX90 VNN2-201ENST00000326499 2118 ntAPPRIS P4 TSL 1 (best) BASIC4.7□□□□□ -1.66
SKA3Q8IX90 SYNE2-203ENST00000357395 21555 ntTSL 5 BASIC4.7□□□□□ -1.66
SKA3Q8IX90 MARCH1-202ENST00000339875 2476 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
SKA3Q8IX90 ROS1-201ENST00000368507 7417 ntAPPRIS ALT2 TSL 5 BASIC4.7□□□□□ -1.66
SKA3Q8IX90 Z83820.1-201ENST00000456978 1499 ntBASIC4.7□□□□□ -1.66
SKA3Q8IX90 MAPK6PS2-201ENST00000379571 2060 ntBASIC4.7□□□□□ -1.66
SKA3Q8IX90 WFDC11-201ENST00000324384 614 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
SKA3Q8IX90 RN7SKP160-201ENST00000363804 340 ntBASIC4.7□□□□□ -1.66
SKA3Q8IX90 DYDC1-202ENST00000372204 750 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
SKA3Q8IX90 MYO3A-202ENST00000376301 727 ntTSL 5 BASIC4.7□□□□□ -1.66
SKA3Q8IX90 UBBP2-201ENST00000376781 231 ntBASIC4.7□□□□□ -1.66
SKA3Q8IX90 HSPA8P15-201ENST00000401676 786 ntBASIC4.7□□□□□ -1.66
SKA3Q8IX90 AL359636.2-201ENST00000412262 259 ntTSL 3 BASIC4.7□□□□□ -1.66
SKA3Q8IX90 AL133325.1-201ENST00000421090 382 ntBASIC4.7□□□□□ -1.66
SKA3Q8IX90 G6PC2-203ENST00000421979 494 ntTSL 3 BASIC4.7□□□□□ -1.66
SKA3Q8IX90 LINC01506-201ENST00000432148 495 ntTSL 2 BASIC4.7□□□□□ -1.66
SKA3Q8IX90 FLJ27354-202ENST00000443562 770 ntTSL 3 BASIC4.7□□□□□ -1.66
SKA3Q8IX90 GAPDHP25-201ENST00000447061 1001 ntBASIC4.7□□□□□ -1.66
SKA3Q8IX90 PPIAP20-201ENST00000449839 135 ntBASIC4.7□□□□□ -1.66
SKA3Q8IX90 FCF1P7-201ENST00000451185 558 ntBASIC4.7□□□□□ -1.66
SKA3Q8IX90 OR52E3P-201ENST00000452083 936 ntBASIC4.7□□□□□ -1.66
SKA3Q8IX90 OR52Y1P-201ENST00000452418 828 ntBASIC4.7□□□□□ -1.66
SKA3Q8IX90 BX546450.1-201ENST00000454307 482 ntTSL 2 BASIC4.7□□□□□ -1.66
SKA3Q8IX90 MTCYBP14-201ENST00000457471 715 ntBASIC4.7□□□□□ -1.66
SKA3Q8IX90 SIAH1P1-201ENST00000479411 923 ntBASIC4.7□□□□□ -1.66
SKA3Q8IX90 AC058823.1-201ENST00000485315 474 ntBASIC4.7□□□□□ -1.66
SKA3Q8IX90 AC021193.1-201ENST00000511607 420 ntBASIC4.7□□□□□ -1.66
SKA3Q8IX90 AC124854.1-201ENST00000512210 511 ntTSL 3 BASIC4.7□□□□□ -1.66
SKA3Q8IX90 AC098976.1-201ENST00000513014 541 ntBASIC4.7□□□□□ -1.66
SKA3Q8IX90 HMGB1P40-201ENST00000525121 540 ntBASIC4.7□□□□□ -1.66
SKA3Q8IX90 HNRNPRP2-201ENST00000528421 743 ntBASIC4.7□□□□□ -1.66
SKA3Q8IX90 TWF1-207ENST00000548315 1170 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
SKA3Q8IX90 AC022098.3-201ENST00000590715 315 ntTSL 3 BASIC4.7□□□□□ -1.66
SKA3Q8IX90 AL136164.2-201ENST00000602823 732 ntTSL 5 BASIC4.7□□□□□ -1.66
SKA3Q8IX90 RPS6KA5-207ENST00000614987 26795 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
SKA3Q8IX90 AL356752.1-201ENST00000615844 593 ntBASIC4.7□□□□□ -1.66
SKA3Q8IX90 OR8G7P-201ENST00000616658 848 ntBASIC4.7□□□□□ -1.66
SKA3Q8IX90 AC243654.3-201ENST00000617427 735 ntTSL 5 BASIC4.7□□□□□ -1.66
SKA3Q8IX90 AC002044.3-201ENST00000623314 541 ntBASIC4.7□□□□□ -1.66
SKA3Q8IX90 SATB1-AS1-263ENST00000630022 622 ntTSL 5 BASIC4.7□□□□□ -1.66
SKA3Q8IX90 UOX-205ENST00000640983 544 ntTSL 4 BASIC4.7□□□□□ -1.66
SKA3Q8IX90 OBSCN-210ENST00000570156 26925 ntAPPRIS P1 TSL 5 BASIC4.7□□□□□ -1.66
SKA3Q8IX90 FGG-205ENST00000407946 1636 ntTSL 5 BASIC4.7□□□□□ -1.66
SKA3Q8IX90 KLHL4-202ENST00000373119 5818 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
SKA3Q8IX90 SLC16A9-201ENST00000395347 3646 ntAPPRIS P1 TSL 2 BASIC4.7□□□□□ -1.66
SKA3Q8IX90 TSPAN8-202ENST00000393330 1516 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
SKA3Q8IX90 CLDND1-208ENST00000503004 2818 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
SKA3Q8IX90 CASC8-203ENST00000502082 1420 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
SKA3Q8IX90 TCP11-207ENST00000418521 1575 ntAPPRIS ALT2 TSL 5 BASIC4.7□□□□□ -1.66
SKA3Q8IX90 IQCM-205ENST00000636414 1844 ntAPPRIS ALT2 TSL 5 BASIC4.69□□□□□ -1.66
SKA3Q8IX90 ANO6-205ENST00000441606 5955 ntAPPRIS ALT2 TSL 1 (best) BASIC4.69□□□□□ -1.66
SKA3Q8IX90 ZNF780B-202ENST00000434248 8665 ntAPPRIS P1 TSL 5 BASIC4.69□□□□□ -1.66
SKA3Q8IX90 ZNF780B-207ENST00000617676 8664 ntAPPRIS P1 TSL 5 BASIC4.69□□□□□ -1.66
SKA3Q8IX90 LYST-202ENST00000389794 12985 ntTSL 5 BASIC4.69□□□□□ -1.66
SKA3Q8IX90 RGS6-204ENST00000404301 1497 ntAPPRIS ALT1 TSL 1 (best) BASIC4.69□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 87.4 ms