Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 AMY1A-201ENST00000370083 1790 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
LIG3P49916 AC005703.1-201ENST00000431343 1773 ntTSL 2 BASIC6.88□□□□□ -1.31
LIG3P49916 AC078880.4-201ENST00000617627 1749 ntBASIC6.88□□□□□ -1.31
LIG3P49916 PLCZ1-206ENST00000538330 1612 ntTSL 2 BASIC6.88□□□□□ -1.31
LIG3P49916 AL353743.4-201ENST00000422653 1547 ntBASIC6.88□□□□□ -1.31
LIG3P49916 AC100871.1-201ENST00000507871 1456 ntBASIC6.88□□□□□ -1.31
LIG3P49916 OSBPL9P1-201ENST00000604744 1469 ntBASIC6.88□□□□□ -1.31
LIG3P49916 FGFR2-218ENST00000478859 3990 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
LIG3P49916 OR4F6-201ENST00000328882 1238 ntAPPRIS P1 BASIC6.88□□□□□ -1.31
LIG3P49916 RNU6-666P-201ENST00000363499 107 ntBASIC6.88□□□□□ -1.31
LIG3P49916 ATP5EP2-201ENST00000381026 385 ntAPPRIS P1 BASIC6.88□□□□□ -1.31
LIG3P49916 RNA5SP498-201ENST00000411342 120 ntBASIC6.88□□□□□ -1.31
LIG3P49916 RPL7P8-201ENST00000411964 730 ntBASIC6.88□□□□□ -1.31
LIG3P49916 RPSAP60-201ENST00000415403 880 ntBASIC6.88□□□□□ -1.31
LIG3P49916 AC005162.1-201ENST00000416513 389 ntTSL 5 BASIC6.88□□□□□ -1.31
LIG3P49916 Z99497.1-201ENST00000421282 135 ntBASIC6.88□□□□□ -1.31
LIG3P49916 ZNF880-203ENST00000424032 558 ntTSL 4 BASIC6.88□□□□□ -1.31
LIG3P49916 AL121759.1-202ENST00000425746 387 ntTSL 3 BASIC6.88□□□□□ -1.31
LIG3P49916 DPY19L1P2-201ENST00000426647 915 ntBASIC6.88□□□□□ -1.31
LIG3P49916 OR2B8P-201ENST00000432841 938 ntBASIC6.88□□□□□ -1.31
LIG3P49916 MTND2P20-201ENST00000440805 661 ntBASIC6.88□□□□□ -1.31
LIG3P49916 AL035420.1-202ENST00000450129 357 ntTSL 3 BASIC6.88□□□□□ -1.31
LIG3P49916 AL137802.1-201ENST00000452795 327 ntTSL 5 BASIC6.88□□□□□ -1.31
LIG3P49916 RPL5P32-201ENST00000454085 879 ntBASIC6.88□□□□□ -1.31
LIG3P49916 CFTRP1-201ENST00000456646 183 ntBASIC6.88□□□□□ -1.31
LIG3P49916 RPL5P24-201ENST00000463742 885 ntBASIC6.88□□□□□ -1.31
LIG3P49916 AC104687.1-201ENST00000485829 412 ntBASIC6.88□□□□□ -1.31
LIG3P49916 AC010168.1-201ENST00000501178 657 ntTSL 3 BASIC6.88□□□□□ -1.31
LIG3P49916 LINC02161-201ENST00000503691 420 ntTSL 3 BASIC6.88□□□□□ -1.31
LIG3P49916 LINC02114-201ENST00000503757 801 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
LIG3P49916 AC108156.1-201ENST00000507849 481 ntTSL 3 BASIC6.88□□□□□ -1.31
LIG3P49916 AC010285.3-201ENST00000511668 676 ntBASIC6.88□□□□□ -1.31
LIG3P49916 MTHFD2P4-201ENST00000515074 1025 ntBASIC6.88□□□□□ -1.31
LIG3P49916 AC113191.1-201ENST00000517759 403 ntBASIC6.88□□□□□ -1.31
LIG3P49916 IGKV2-19-201ENST00000518132 283 ntBASIC6.88□□□□□ -1.31
LIG3P49916 AC008691.1-202ENST00000521472 811 ntTSL 3 BASIC6.88□□□□□ -1.31
LIG3P49916 AC079015.1-201ENST00000521793 596 ntTSL 2 BASIC6.88□□□□□ -1.31
LIG3P49916 SMARCE1P4-201ENST00000523647 241 ntBASIC6.88□□□□□ -1.31
LIG3P49916 DEFB134-202ENST00000526438 1068 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
LIG3P49916 AC022509.1-203ENST00000541940 708 ntTSL 4 BASIC6.88□□□□□ -1.31
LIG3P49916 CBX5-204ENST00000550411 894 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
LIG3P49916 TIMM9-208ENST00000556007 746 ntTSL 3 BASIC6.88□□□□□ -1.31
LIG3P49916 AC090888.3-201ENST00000558917 509 ntBASIC6.88□□□□□ -1.31
LIG3P49916 AC127502.1-204ENST00000564861 618 ntTSL 3 BASIC6.88□□□□□ -1.31
LIG3P49916 AC027796.1-201ENST00000575593 512 ntBASIC6.88□□□□□ -1.31
LIG3P49916 AC106037.2-201ENST00000578583 447 ntTSL 5 BASIC6.88□□□□□ -1.31
LIG3P49916 SNORD39.2-201ENST00000579995 76 ntBASIC6.88□□□□□ -1.31
LIG3P49916 AC015802.3-201ENST00000590241 570 ntTSL 4 BASIC6.88□□□□□ -1.31
LIG3P49916 RPARP-AS1-204ENST00000594818 445 ntTSL 3 BASIC6.88□□□□□ -1.31
LIG3P49916 ZRANB2-AS2-215ENST00000596952 624 ntTSL 5 BASIC6.88□□□□□ -1.31
LIG3P49916 LINC01081-201ENST00000597373 465 ntTSL 5 BASIC6.88□□□□□ -1.31
LIG3P49916 LINC01320-205ENST00000604250 857 ntTSL 5 BASIC6.88□□□□□ -1.31
LIG3P49916 AC004948.1-201ENST00000609858 672 ntBASIC6.88□□□□□ -1.31
LIG3P49916 ANKRD36C-207ENST00000612359 650 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
LIG3P49916 AC025588.4-201ENST00000615802 908 ntBASIC6.88□□□□□ -1.31
LIG3P49916 MILR1-204ENST00000616498 747 ntAPPRIS ALT2 TSL 1 (best) BASIC6.88□□□□□ -1.31
LIG3P49916 AC009509.4-201ENST00000619202 509 ntBASIC6.88□□□□□ -1.31
LIG3P49916 AC006840.1-201ENST00000623069 542 ntBASIC6.88□□□□□ -1.31
LIG3P49916 AC120057.5-201ENST00000623840 154 ntBASIC6.88□□□□□ -1.31
LIG3P49916 PCMTD1P7-201ENST00000634506 357 ntBASIC6.88□□□□□ -1.31
LIG3P49916 DMD-228ENST00000541735 7080 ntTSL 5 BASIC6.88□□□□□ -1.31
LIG3P49916 PTPRD-214ENST00000540109 6210 ntAPPRIS P1 TSL 5 BASIC6.88□□□□□ -1.31
LIG3P49916 PARD3B-213ENST00000614500 7538 ntTSL 5 BASIC6.88□□□□□ -1.31
LIG3P49916 AC087516.1-201ENST00000561236 2428 ntBASIC6.88□□□□□ -1.31
LIG3P49916 TEAD1-203ENST00000526600 8477 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
LIG3P49916 LINC01441-201ENST00000433766 2290 ntTSL 2 BASIC6.88□□□□□ -1.31
LIG3P49916 CCDC150-202ENST00000409270 2243 ntAPPRIS ALT2 TSL 5 BASIC6.88□□□□□ -1.31
LIG3P49916 ZNF521-201ENST00000361524 4871 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
LIG3P49916 HMMR-204ENST00000432118 2084 ntAPPRIS ALT2 TSL 2 BASIC6.88□□□□□ -1.31
LIG3P49916 LINC01822-201ENST00000435682 2098 ntTSL 2 BASIC6.88□□□□□ -1.31
LIG3P49916 LRRC49-204ENST00000544974 6605 ntTSL 2 BASIC6.87□□□□□ -1.31
LIG3P49916 ESRRG-201ENST00000359162 5197 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
LIG3P49916 AL603750.1-201ENST00000624216 1717 ntBASIC6.87□□□□□ -1.31
LIG3P49916 ZNF224-201ENST00000336976 3980 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
LIG3P49916 AC245100.2-201ENST00000454544 1679 ntBASIC6.87□□□□□ -1.31
LIG3P49916 DEUP1-209ENST00000531792 1656 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
LIG3P49916 TMEM217-202ENST00000356757 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC6.87□□□□□ -1.31
LIG3P49916 BLM-201ENST00000355112 5258 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
LIG3P49916 AL391704.1-201ENST00000422206 2368 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
LIG3P49916 MAGEB10-202ENST00000614159 1389 ntAPPRIS P1 BASIC6.87□□□□□ -1.31
LIG3P49916 OR5K4-201ENST00000354924 966 ntAPPRIS P1 BASIC6.87□□□□□ -1.31
LIG3P49916 RNU6-500P-201ENST00000362349 107 ntBASIC6.87□□□□□ -1.31
LIG3P49916 RN7SKP191-201ENST00000364713 306 ntBASIC6.87□□□□□ -1.31
LIG3P49916 RNU4-7P-201ENST00000364758 141 ntBASIC6.87□□□□□ -1.31
LIG3P49916 AC092634.1-201ENST00000366505 199 ntBASIC6.87□□□□□ -1.31
LIG3P49916 SLAMF6-201ENST00000368055 730 ntTSL 2 BASIC6.87□□□□□ -1.31
LIG3P49916 APOOL-201ENST00000373173 1279 ntAPPRIS P2 TSL 1 (best) BASIC6.87□□□□□ -1.31
LIG3P49916 PPIAP26-201ENST00000377951 522 ntBASIC6.87□□□□□ -1.31
LIG3P49916 CLEC7A-206ENST00000396484 1000 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
LIG3P49916 ERG-202ENST00000398897 4651 ntTSL 5 BASIC6.87□□□□□ -1.31
LIG3P49916 IL6-203ENST00000401651 539 ntTSL 2 BASIC6.87□□□□□ -1.31
LIG3P49916 RN7SKP59-201ENST00000410520 314 ntBASIC6.87□□□□□ -1.31
LIG3P49916 RN7SKP188-201ENST00000410789 317 ntBASIC6.87□□□□□ -1.31
LIG3P49916 AC019064.1-201ENST00000414796 499 ntTSL 2 BASIC6.87□□□□□ -1.31
LIG3P49916 OFD1P2Y-201ENST00000421895 1149 ntBASIC6.87□□□□□ -1.31
LIG3P49916 AC000089.1-201ENST00000424559 801 ntBASIC6.87□□□□□ -1.31
LIG3P49916 AC010148.1-201ENST00000427619 707 ntTSL 3 BASIC6.87□□□□□ -1.31
LIG3P49916 MTCO1P54-201ENST00000430139 712 ntBASIC6.87□□□□□ -1.31
LIG3P49916 CDY14P-201ENST00000431260 1014 ntBASIC6.87□□□□□ -1.31
LIG3P49916 AL022324.2-201ENST00000434827 780 ntBASIC6.87□□□□□ -1.31
Retrieved 100 of 98,524 protein–RNA pairs in 89.8 ms