Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 AC105399.1-202ENST00000447303 205 ntBASIC5.68□□□□□ -1.5
PTPN9P43378 AC091976.1-201ENST00000458002 448 ntTSL 3 BASIC5.68□□□□□ -1.5
PTPN9P43378 NCK1-AS1-201ENST00000461864 1194 ntTSL 2 BASIC5.68□□□□□ -1.5
PTPN9P43378 EIF1P7-201ENST00000487533 337 ntBASIC5.68□□□□□ -1.5
PTPN9P43378 RN7SL466P-201ENST00000497546 295 ntBASIC5.68□□□□□ -1.5
PTPN9P43378 AC094108.1-201ENST00000502494 527 ntTSL 3 BASIC5.68□□□□□ -1.5
PTPN9P43378 AC117383.1-201ENST00000507698 422 ntTSL 3 BASIC5.68□□□□□ -1.5
PTPN9P43378 HMGB1P44-201ENST00000508597 572 ntBASIC5.68□□□□□ -1.5
PTPN9P43378 UGT2A3P7-201ENST00000510485 734 ntBASIC5.68□□□□□ -1.5
PTPN9P43378 LINC02483-201ENST00000512043 1143 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
PTPN9P43378 AC093772.1-201ENST00000513519 506 ntTSL 2 BASIC5.68□□□□□ -1.5
PTPN9P43378 SPRY4-AS1-205ENST00000514303 152 ntTSL 3 BASIC5.68□□□□□ -1.5
PTPN9P43378 AP003696.1-201ENST00000519337 770 ntTSL 3 BASIC5.68□□□□□ -1.5
PTPN9P43378 AF117829.1-208ENST00000521996 915 ntTSL 3 BASIC5.68□□□□□ -1.5
PTPN9P43378 LINC01495-201ENST00000532380 421 ntTSL 2 BASIC5.68□□□□□ -1.5
PTPN9P43378 C11orf74-210ENST00000534635 801 ntAPPRIS ALT2 TSL 2 BASIC5.68□□□□□ -1.5
PTPN9P43378 AC039056.1-201ENST00000552704 467 ntTSL 3 BASIC5.68□□□□□ -1.5
PTPN9P43378 AC084757.2-201ENST00000559165 540 ntTSL 2 BASIC5.68□□□□□ -1.5
PTPN9P43378 AP005242.1-201ENST00000583946 467 ntTSL 3 BASIC5.68□□□□□ -1.5
PTPN9P43378 AC011458.1-201ENST00000604034 617 ntBASIC5.68□□□□□ -1.5
PTPN9P43378 BNIP3P31-201ENST00000604515 566 ntBASIC5.68□□□□□ -1.5
PTPN9P43378 AC010245.2-201ENST00000606908 1167 ntBASIC5.68□□□□□ -1.5
PTPN9P43378 AC245389.2-201ENST00000616023 576 ntBASIC5.68□□□□□ -1.5
PTPN9P43378 AC016957.2-201ENST00000616998 848 ntBASIC5.68□□□□□ -1.5
PTPN9P43378 AC242843.1-201ENST00000618702 573 ntBASIC5.68□□□□□ -1.5
PTPN9P43378 AC026124.2-201ENST00000621847 656 ntBASIC5.68□□□□□ -1.5
PTPN9P43378 LINC01125-249ENST00000627399 1067 ntAPPRIS P5 TSL 5 BASIC5.68□□□□□ -1.5
PTPN9P43378 CCDC195-201ENST00000638102 606 ntAPPRIS P1 TSL 5 BASIC5.68□□□□□ -1.5
PTPN9P43378 AC007750.1-202ENST00000418968 4098 ntTSL 5 BASIC5.68□□□□□ -1.5
PTPN9P43378 DSPP-201ENST00000282478 4281 ntAPPRIS P1 TSL 5 BASIC5.68□□□□□ -1.5
PTPN9P43378 LINC01581-202ENST00000558874 3173 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
PTPN9P43378 BCLAF1-201ENST00000353331 7110 ntTSL 5 BASIC5.68□□□□□ -1.5
PTPN9P43378 PRLR-203ENST00000348262 1339 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
PTPN9P43378 GCSAML-206ENST00000527084 1308 ntAPPRIS ALT2 TSL 1 (best) BASIC5.68□□□□□ -1.5
PTPN9P43378 CYP3A43-204ENST00000354829 1709 ntAPPRIS ALT1 TSL 1 (best) BASIC5.68□□□□□ -1.5
PTPN9P43378 AC083843.2-201ENST00000568248 6253 ntBASIC5.68□□□□□ -1.5
PTPN9P43378 CYP3A43-203ENST00000342499 1396 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
PTPN9P43378 ENSA-214ENST00000513281 1369 ntTSL 2 BASIC5.67□□□□□ -1.5
PTPN9P43378 PNPLA4-203ENST00000444736 2752 ntAPPRIS P1 TSL 4 BASIC5.67□□□□□ -1.5
PTPN9P43378 ETV1-207ENST00000405358 4181 ntTSL 5 BASIC5.67□□□□□ -1.5
PTPN9P43378 ALCAM-205ENST00000472644 4189 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
PTPN9P43378 FKBP7-204ENST00000424785 2834 ntAPPRIS P3 TSL 1 (best) BASIC5.67□□□□□ -1.5
PTPN9P43378 ZNF93-201ENST00000343769 2648 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
PTPN9P43378 FOXP2-202ENST00000360232 1412 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
PTPN9P43378 CFL2-201ENST00000298159 6747 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
PTPN9P43378 TOX3-202ENST00000407228 3124 ntAPPRIS ALT2 TSL 2 BASIC5.67□□□□□ -1.5
PTPN9P43378 NPSR1-AS1-202ENST00000419766 4821 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
PTPN9P43378 CPNE4-214ENST00000617767 3556 ntTSL 2 BASIC5.67□□□□□ -1.5
PTPN9P43378 ITGB3BP-201ENST00000271002 948 ntAPPRIS P3 TSL 1 (best) BASIC5.67□□□□□ -1.5
PTPN9P43378 POU1F1-201ENST00000344265 1149 ntTSL 5 BASIC5.67□□□□□ -1.5
PTPN9P43378 RNA5SP319-201ENST00000362768 119 ntBASIC5.67□□□□□ -1.5
PTPN9P43378 GPR52-201ENST00000367685 1088 ntAPPRIS P1 BASIC5.67□□□□□ -1.5
PTPN9P43378 SNORA16A-201ENST00000384342 137 ntBASIC5.67□□□□□ -1.5
PTPN9P43378 AL035405.1-201ENST00000400795 710 ntBASIC5.67□□□□□ -1.5
PTPN9P43378 Z86062.1-201ENST00000406773 777 ntBASIC5.67□□□□□ -1.5
PTPN9P43378 SRSF1P1-201ENST00000424058 520 ntBASIC5.67□□□□□ -1.5
PTPN9P43378 AL360007.1-201ENST00000426166 349 ntTSL 3 BASIC5.67□□□□□ -1.5
PTPN9P43378 ELOCP6-201ENST00000429066 328 ntBASIC5.67□□□□□ -1.5
PTPN9P43378 AC017002.1-201ENST00000432268 881 ntTSL 5 BASIC5.67□□□□□ -1.5
PTPN9P43378 AL136140.1-201ENST00000436113 473 ntTSL 3 BASIC5.67□□□□□ -1.5
PTPN9P43378 AC012075.1-201ENST00000436549 580 ntBASIC5.67□□□□□ -1.5
PTPN9P43378 GYPE-202ENST00000437468 499 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
PTPN9P43378 AL450472.1-201ENST00000439434 405 ntTSL 2 BASIC5.67□□□□□ -1.5
PTPN9P43378 RNF219-AS1-202ENST00000444769 590 ntTSL 4 BASIC5.67□□□□□ -1.5
PTPN9P43378 MTND6P5-201ENST00000448266 512 ntBASIC5.67□□□□□ -1.5
PTPN9P43378 AC079760.2-201ENST00000449361 681 ntTSL 5 BASIC5.67□□□□□ -1.5
PTPN9P43378 ELOCP12-201ENST00000458706 328 ntBASIC5.67□□□□□ -1.5
PTPN9P43378 AC023141.9-201ENST00000458734 412 ntBASIC5.67□□□□□ -1.5
PTPN9P43378 VN1R5-201ENST00000472952 1239 ntAPPRIS P1 BASIC5.67□□□□□ -1.5
PTPN9P43378 AC004069.1-201ENST00000504082 549 ntTSL 4 BASIC5.67□□□□□ -1.5
PTPN9P43378 SCARNA16.4-201ENST00000516956 187 ntBASIC5.67□□□□□ -1.5
PTPN9P43378 AC018682.2-201ENST00000517716 399 ntTSL 5 BASIC5.67□□□□□ -1.5
PTPN9P43378 AP001085.1-201ENST00000524441 639 ntTSL 2 BASIC5.67□□□□□ -1.5
PTPN9P43378 RSF1-IT2-201ENST00000529656 566 ntTSL 5 BASIC5.67□□□□□ -1.5
PTPN9P43378 AC027544.3-201ENST00000535082 757 ntBASIC5.67□□□□□ -1.5
PTPN9P43378 AC090680.2-201ENST00000550279 742 ntTSL 3 BASIC5.67□□□□□ -1.5
PTPN9P43378 AC019322.1-201ENST00000571869 389 ntBASIC5.67□□□□□ -1.5
PTPN9P43378 RN7SL356P-201ENST00000582228 248 ntBASIC5.67□□□□□ -1.5
PTPN9P43378 AC011824.3-201ENST00000585093 563 ntTSL 4 BASIC5.67□□□□□ -1.5
PTPN9P43378 AC011990.1-201ENST00000592809 734 ntTSL 3 BASIC5.67□□□□□ -1.5
PTPN9P43378 AL391834.1-201ENST00000609609 560 ntBASIC5.67□□□□□ -1.5
PTPN9P43378 PROX1-AS1-219ENST00000610094 791 ntTSL 5 BASIC5.67□□□□□ -1.5
PTPN9P43378 DARS-AS1-225ENST00000615163 824 ntTSL 5 BASIC5.67□□□□□ -1.5
PTPN9P43378 UBE2NL-201ENST00000618570 1185 ntAPPRIS P1 BASIC5.67□□□□□ -1.5
PTPN9P43378 PXT1-202ENST00000619547 619 ntAPPRIS ALT2 TSL 1 (best) BASIC5.67□□□□□ -1.5
PTPN9P43378 AL049777.1-201ENST00000622740 518 ntBASIC5.67□□□□□ -1.5
PTPN9P43378 KCNC4-201ENST00000369787 18750 ntAPPRIS P3 TSL 1 (best) BASIC5.67□□□□□ -1.5
PTPN9P43378 ZNF343-207ENST00000612935 3675 ntAPPRIS ALT2 TSL 5 BASIC5.67□□□□□ -1.5
PTPN9P43378 MTND4P9-201ENST00000507819 1346 ntBASIC5.67□□□□□ -1.5
PTPN9P43378 KARSP1-201ENST00000451871 1752 ntBASIC5.67□□□□□ -1.5
PTPN9P43378 AL158064.2-203ENST00000639897 2003 ntTSL 5 BASIC5.67□□□□□ -1.5
PTPN9P43378 AGO2-201ENST00000220592 14581 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
PTPN9P43378 RFC1-201ENST00000349703 4859 ntAPPRIS P3 TSL 1 (best) BASIC5.66□□□□□ -1.5
PTPN9P43378 MCM3AP-AS1-204ENST00000432735 2302 ntTSL 2 BASIC5.66□□□□□ -1.5
PTPN9P43378 ENPP2-207ENST00000522167 1695 ntTSL 2 BASIC5.66□□□□□ -1.5
PTPN9P43378 NSUN3-201ENST00000314622 3289 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
PTPN9P43378 TEDDM1-201ENST00000367565 2500 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
PTPN9P43378 RAB30-212ENST00000533486 9929 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
PTPN9P43378 SNORA63.3-201ENST00000362682 132 ntBASIC5.66□□□□□ -1.5
PTPN9P43378 SNORA11.3-201ENST00000408471 128 ntBASIC5.66□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 129.4 ms