Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 BIRC6-201ENST00000421745 15703 ntAPPRIS P1 TSL 1 (best) BASIC6.92□□□□□ -1.3
MSX1P28360 AC024560.2-201ENST00000507981 1497 ntBASIC6.92□□□□□ -1.3
MSX1P28360 WDR64-204ENST00000437684 2310 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
MSX1P28360 BTBD7-208ENST00000555525 2328 ntTSL 5 BASIC6.92□□□□□ -1.3
MSX1P28360 VN1R1-201ENST00000321039 2353 ntAPPRIS P1 BASIC6.91□□□□□ -1.3
MSX1P28360 MBD5-201ENST00000404807 5920 ntTSL 5 BASIC6.91□□□□□ -1.3
MSX1P28360 USPL1-201ENST00000255304 3814 ntAPPRIS P1 TSL 1 (best) BASIC6.91□□□□□ -1.3
MSX1P28360 CCR3-202ENST00000395940 1581 ntAPPRIS P1 TSL 1 (best) BASIC6.91□□□□□ -1.3
MSX1P28360 MTCO1P14-201ENST00000441695 1559 ntBASIC6.91□□□□□ -1.3
MSX1P28360 BOLL-204ENST00000430004 2987 ntTSL 2 BASIC6.91□□□□□ -1.3
MSX1P28360 PAK5-201ENST00000353224 4500 ntAPPRIS P1 TSL 1 (best) BASIC6.91□□□□□ -1.3
MSX1P28360 C1orf132-203ENST00000608023 15145 ntTSL 5 BASIC6.91□□□□□ -1.3
MSX1P28360 BRINP3-201ENST00000367462 3142 ntAPPRIS P1 TSL 1 (best) BASIC6.91□□□□□ -1.3
MSX1P28360 ST7-206ENST00000393447 2182 ntTSL 1 (best) BASIC6.91□□□□□ -1.3
MSX1P28360 AF131215.2-201ENST00000531549 1710 ntBASIC6.91□□□□□ -1.3
MSX1P28360 OR2AH1P-202ENST00000641232 2744 ntBASIC6.91□□□□□ -1.3
MSX1P28360 DZANK1-203ENST00000357236 3739 ntAPPRIS ALT2 TSL 5 BASIC6.91□□□□□ -1.3
MSX1P28360 TTR-201ENST00000237014 957 ntAPPRIS P1 TSL 1 (best) BASIC6.91□□□□□ -1.3
MSX1P28360 OR5P1P-201ENST00000299512 925 ntBASIC6.91□□□□□ -1.3
MSX1P28360 RNU6-492P-201ENST00000363035 104 ntBASIC6.91□□□□□ -1.3
MSX1P28360 SAMD13-202ENST00000370669 856 ntAPPRIS P1 TSL 3 BASIC6.91□□□□□ -1.3
MSX1P28360 Y_RNA.459-201ENST00000384251 102 ntBASIC6.91□□□□□ -1.3
MSX1P28360 Y_RNA.474-201ENST00000384341 102 ntBASIC6.91□□□□□ -1.3
MSX1P28360 RNU6-185P-201ENST00000384421 107 ntBASIC6.91□□□□□ -1.3
MSX1P28360 SRSF7-202ENST00000409276 1050 ntTSL 5 BASIC6.91□□□□□ -1.3
MSX1P28360 RNU6-373P-201ENST00000411247 98 ntBASIC6.91□□□□□ -1.3
MSX1P28360 SPRY4-AS1-201ENST00000414314 521 ntTSL 3 BASIC6.91□□□□□ -1.3
MSX1P28360 AC009310.1-201ENST00000414414 451 ntBASIC6.91□□□□□ -1.3
MSX1P28360 SPA17P1-201ENST00000416656 452 ntBASIC6.91□□□□□ -1.3
MSX1P28360 AL049712.1-201ENST00000418739 872 ntTSL 3 BASIC6.91□□□□□ -1.3
MSX1P28360 AC114814.2-201ENST00000419195 485 ntBASIC6.91□□□□□ -1.3
MSX1P28360 LINC01780-201ENST00000420059 442 ntTSL 2 BASIC6.91□□□□□ -1.3
MSX1P28360 RAD23BP1-201ENST00000421404 1227 ntBASIC6.91□□□□□ -1.3
MSX1P28360 AL132796.1-201ENST00000421617 479 ntTSL 3 BASIC6.91□□□□□ -1.3
MSX1P28360 AL353678.1-201ENST00000422735 741 ntBASIC6.91□□□□□ -1.3
MSX1P28360 TEX41-204ENST00000423031 491 ntTSL 4 BASIC6.91□□□□□ -1.3
MSX1P28360 RPL35AP12-201ENST00000425362 338 ntBASIC6.91□□□□□ -1.3
MSX1P28360 AC133104.1-201ENST00000429100 218 ntBASIC6.91□□□□□ -1.3
MSX1P28360 NANOGP6-201ENST00000429190 847 ntBASIC6.91□□□□□ -1.3
MSX1P28360 DYNLL1P7-201ENST00000429273 258 ntBASIC6.91□□□□□ -1.3
MSX1P28360 OR2B7P-201ENST00000429302 934 ntBASIC6.91□□□□□ -1.3
MSX1P28360 LANCL1-AS1-203ENST00000433296 864 ntTSL 2 BASIC6.91□□□□□ -1.3
MSX1P28360 AL049552.1-201ENST00000444302 577 ntTSL 2 BASIC6.91□□□□□ -1.3
MSX1P28360 AC023274.2-201ENST00000445264 521 ntBASIC6.91□□□□□ -1.3
MSX1P28360 LINC00652-202ENST00000454749 963 ntTSL 1 (best) BASIC6.91□□□□□ -1.3
MSX1P28360 MTND1P12-201ENST00000455231 147 ntBASIC6.91□□□□□ -1.3
MSX1P28360 AL583859.1-201ENST00000455871 335 ntTSL 3 BASIC6.91□□□□□ -1.3
MSX1P28360 AC010878.1-201ENST00000456500 1047 ntBASIC6.91□□□□□ -1.3
MSX1P28360 Y_RNA.632-201ENST00000459189 102 ntBASIC6.91□□□□□ -1.3
MSX1P28360 AC022730.2-201ENST00000465359 452 ntBASIC6.91□□□□□ -1.3
MSX1P28360 RN7SL58P-201ENST00000473445 294 ntBASIC6.91□□□□□ -1.3
MSX1P28360 GPX6-202ENST00000474923 716 ntTSL 1 (best) BASIC6.91□□□□□ -1.3
MSX1P28360 ABHD10-204ENST00000494817 801 ntTSL 3 BASIC6.91□□□□□ -1.3
MSX1P28360 AC090638.1-201ENST00000498296 909 ntBASIC6.91□□□□□ -1.3
MSX1P28360 LINC02005-201ENST00000498832 782 ntTSL 3 BASIC6.91□□□□□ -1.3
MSX1P28360 AC112204.1-201ENST00000502591 103 ntBASIC6.91□□□□□ -1.3
MSX1P28360 AC103851.1-201ENST00000506833 274 ntBASIC6.91□□□□□ -1.3
MSX1P28360 AC093809.1-201ENST00000509155 340 ntBASIC6.91□□□□□ -1.3
MSX1P28360 LINC02223-203ENST00000514771 781 ntTSL 5 BASIC6.91□□□□□ -1.3
MSX1P28360 AF117829.1-202ENST00000524166 836 ntTSL 3 BASIC6.91□□□□□ -1.3
MSX1P28360 PHBP17-201ENST00000528576 541 ntBASIC6.91□□□□□ -1.3
MSX1P28360 AP000790.1-201ENST00000528891 737 ntBASIC6.91□□□□□ -1.3
MSX1P28360 AC090424.1-201ENST00000535243 736 ntBASIC6.91□□□□□ -1.3
MSX1P28360 AC006205.1-201ENST00000538067 389 ntTSL 2 BASIC6.91□□□□□ -1.3
MSX1P28360 LINC00944-202ENST00000540684 888 ntTSL 1 (best) BASIC6.91□□□□□ -1.3
MSX1P28360 AL049779.1-201ENST00000553306 670 ntTSL 2 BASIC6.91□□□□□ -1.3
MSX1P28360 AL132640.2-202ENST00000559732 614 ntBASIC6.91□□□□□ -1.3
MSX1P28360 AC092142.1-202ENST00000567021 829 ntTSL 5 BASIC6.91□□□□□ -1.3
MSX1P28360 AC091178.1-204ENST00000577328 366 ntTSL 4 BASIC6.91□□□□□ -1.3
MSX1P28360 AC064805.2-201ENST00000582959 523 ntTSL 4 BASIC6.91□□□□□ -1.3
MSX1P28360 AC010605.1-201ENST00000597303 797 ntTSL 2 BASIC6.91□□□□□ -1.3
MSX1P28360 OR7E94P-202ENST00000601375 790 ntBASIC6.91□□□□□ -1.3
MSX1P28360 XIST-210ENST00000602863 775 ntTSL 3 BASIC6.91□□□□□ -1.3
MSX1P28360 AC008385.1-201ENST00000604421 355 ntBASIC6.91□□□□□ -1.3
MSX1P28360 AC124303.1-201ENST00000605703 360 ntBASIC6.91□□□□□ -1.3
MSX1P28360 AL137000.1-201ENST00000610528 1244 ntBASIC6.91□□□□□ -1.3
MSX1P28360 AC008115.3-201ENST00000614874 549 ntBASIC6.91□□□□□ -1.3
MSX1P28360 C5orf56-207ENST00000621237 486 ntAPPRIS P5 TSL 2 BASIC6.91□□□□□ -1.3
MSX1P28360 LMO7-205ENST00000377534 4896 ntAPPRIS ALT2 TSL 1 (best) BASIC6.91□□□□□ -1.3
MSX1P28360 ICE2P1-201ENST00000512800 1849 ntBASIC6.91□□□□□ -1.3
MSX1P28360 FASLG-202ENST00000367721 1888 ntAPPRIS P1 TSL 1 (best) BASIC6.91□□□□□ -1.3
MSX1P28360 FKTN-202ENST00000357998 2404 ntTSL 5 BASIC6.91□□□□□ -1.3
MSX1P28360 MS4A2-204ENST00000617306 3512 ntTSL 1 (best) BASIC6.91□□□□□ -1.3
MSX1P28360 PIK3C3-202ENST00000398870 9206 ntTSL 2 BASIC6.91□□□□□ -1.3
MSX1P28360 IQCA1-206ENST00000431676 3069 ntAPPRIS ALT2 TSL 2 BASIC6.91□□□□□ -1.3
MSX1P28360 PABPC5-201ENST00000312600 3221 ntAPPRIS P1 TSL 1 (best) BASIC6.91□□□□□ -1.3
MSX1P28360 CASP14-201ENST00000427043 3241 ntAPPRIS P1 TSL 1 (best) BASIC6.91□□□□□ -1.3
MSX1P28360 AC090132.1-201ENST00000524071 1480 ntBASIC6.91□□□□□ -1.3
MSX1P28360 RAI14-205ENST00000503673 3339 ntAPPRIS P1 TSL 2 BASIC6.91□□□□□ -1.3
MSX1P28360 C2CD6-201ENST00000286195 2104 ntAPPRIS P3 TSL 1 (best) BASIC6.91□□□□□ -1.3
MSX1P28360 PSG2-202ENST00000406487 1538 ntAPPRIS P1 TSL 1 (best) BASIC6.91□□□□□ -1.3
MSX1P28360 AL161911.1-202ENST00000464488 1534 ntAPPRIS P1 TSL 5 BASIC6.91□□□□□ -1.3
MSX1P28360 PAK3-201ENST00000262836 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC6.91□□□□□ -1.3
MSX1P28360 RLIMP2-201ENST00000427891 1563 ntBASIC6.91□□□□□ -1.3
MSX1P28360 ZNF43-201ENST00000354959 2881 ntAPPRIS P3 TSL 1 (best) BASIC6.9□□□□□ -1.3
MSX1P28360 HUWE1-203ENST00000342160 14796 ntAPPRIS P1 TSL 5 BASIC6.9□□□□□ -1.3
MSX1P28360 LINC00506-203ENST00000629295 4300 ntTSL 1 (best) BASIC6.9□□□□□ -1.3
MSX1P28360 MTPN-201ENST00000393085 3738 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.3
MSX1P28360 C1QTNF7-201ENST00000295297 4516 ntTSL 1 (best) BASIC6.9□□□□□ -1.3
MSX1P28360 THSD7B-202ENST00000409968 6111 ntAPPRIS P2 TSL 5 BASIC6.9□□□□□ -1.3
Retrieved 100 of 98,524 protein–RNA pairs in 114.5 ms