Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 RBPJP2-201ENST00000618187 1444 ntBASIC6.2□□□□□ -1.42
COL5A3P25940 TOX3-202ENST00000407228 3124 ntAPPRIS ALT2 TSL 2 BASIC6.2□□□□□ -1.42
COL5A3P25940 STON1-202ENST00000406226 5614 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
COL5A3P25940 INSIG2-208ENST00000614681 1347 ntTSL 5 BASIC6.2□□□□□ -1.42
COL5A3P25940 SNORA70.6-201ENST00000383934 134 ntBASIC6.2□□□□□ -1.42
COL5A3P25940 MIR298-201ENST00000401212 88 ntBASIC6.2□□□□□ -1.42
COL5A3P25940 RPL21P108-201ENST00000413857 481 ntBASIC6.2□□□□□ -1.42
COL5A3P25940 MTND4LP17-201ENST00000414607 293 ntBASIC6.2□□□□□ -1.42
COL5A3P25940 MTCYBP21-201ENST00000443300 1113 ntBASIC6.2□□□□□ -1.42
COL5A3P25940 ATP5A1P7-201ENST00000453978 1279 ntBASIC6.2□□□□□ -1.42
COL5A3P25940 AK3P4-201ENST00000504283 583 ntBASIC6.2□□□□□ -1.42
COL5A3P25940 LINC02438-201ENST00000505347 641 ntTSL 3 BASIC6.2□□□□□ -1.42
COL5A3P25940 VNN2-207ENST00000525289 900 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
COL5A3P25940 PARP1P2-201ENST00000556806 195 ntBASIC6.2□□□□□ -1.42
COL5A3P25940 KPNA2P3-201ENST00000584190 848 ntBASIC6.2□□□□□ -1.42
COL5A3P25940 AC005191.1-201ENST00000603950 358 ntBASIC6.2□□□□□ -1.42
COL5A3P25940 FAM27B-201ENST00000610601 213 ntBASIC6.2□□□□□ -1.42
COL5A3P25940 AC015574.1-205ENST00000611285 524 ntTSL 5 BASIC6.2□□□□□ -1.42
COL5A3P25940 USP29-201ENST00000254181 3705 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
COL5A3P25940 VSNL1-203ENST00000406397 2725 ntAPPRIS P1 TSL 5 BASIC6.2□□□□□ -1.42
COL5A3P25940 AMD1-204ENST00000368885 3438 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
COL5A3P25940 SLC26A5-208ENST00000393730 2498 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
COL5A3P25940 MDM4-203ENST00000367182 10073 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
COL5A3P25940 FHL1-218ENST00000543669 2878 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
COL5A3P25940 STAP1-201ENST00000265404 1511 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
COL5A3P25940 AC068446.1-201ENST00000556425 1549 ntBASIC6.2□□□□□ -1.42
COL5A3P25940 PDGFRA-201ENST00000257290 6576 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
COL5A3P25940 MTERF1-203ENST00000419292 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC6.2□□□□□ -1.42
COL5A3P25940 GAS2L3-203ENST00000539410 2229 ntAPPRIS P1 TSL 2 BASIC6.2□□□□□ -1.42
COL5A3P25940 TIAM2-208ENST00000461783 6981 ntAPPRIS P1 TSL 2 BASIC6.2□□□□□ -1.42
COL5A3P25940 MFAP1-201ENST00000267812 2155 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
COL5A3P25940 IFNG-AS1-202ENST00000538665 1791 ntTSL 2 BASIC6.2□□□□□ -1.42
COL5A3P25940 DDX3Y-201ENST00000336079 4445 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
COL5A3P25940 ANKRD31-203ENST00000506364 6207 ntAPPRIS ALT2 TSL 5 BASIC6.19□□□□□ -1.42
COL5A3P25940 F9-201ENST00000218099 2780 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
COL5A3P25940 GPATCH2L-201ENST00000261530 14007 ntTSL 2 BASIC6.19□□□□□ -1.42
COL5A3P25940 OR2M7-201ENST00000317965 939 ntAPPRIS P1 BASIC6.19□□□□□ -1.42
COL5A3P25940 RNA5SP515-201ENST00000364570 118 ntBASIC6.19□□□□□ -1.42
COL5A3P25940 TRAV12-2-201ENST00000390437 445 ntAPPRIS P1 BASIC6.19□□□□□ -1.42
COL5A3P25940 LINC01400-201ENST00000426358 947 ntTSL 3 BASIC6.19□□□□□ -1.42
COL5A3P25940 AC073052.1-201ENST00000440417 714 ntBASIC6.19□□□□□ -1.42
COL5A3P25940 SNAP25-AS1-204ENST00000451151 867 ntTSL 2 BASIC6.19□□□□□ -1.42
COL5A3P25940 AC010326.1-201ENST00000462726 602 ntBASIC6.19□□□□□ -1.42
COL5A3P25940 DERA-209ENST00000532964 854 ntTSL 5 BASIC6.19□□□□□ -1.42
COL5A3P25940 LINC01486-201ENST00000538041 716 ntTSL 2 BASIC6.19□□□□□ -1.42
COL5A3P25940 NUDT7-203ENST00000563839 316 ntTSL 3 BASIC6.19□□□□□ -1.42
COL5A3P25940 RN7SL290P-201ENST00000578661 300 ntBASIC6.19□□□□□ -1.42
COL5A3P25940 AL133338.2-201ENST00000604292 736 ntBASIC6.19□□□□□ -1.42
COL5A3P25940 AL024498.1-201ENST00000606522 1100 ntTSL 3 BASIC6.19□□□□□ -1.42
COL5A3P25940 AC000095.2-202ENST00000637415 154 ntBASIC6.19□□□□□ -1.42
COL5A3P25940 LTA4H-202ENST00000413268 1908 ntTSL 2 BASIC6.19□□□□□ -1.42
COL5A3P25940 CACNA1C-220ENST00000399655 13433 ntAPPRIS ALT2 TSL 1 (best) BASIC6.19□□□□□ -1.42
COL5A3P25940 TTC39B-208ENST00000512701 10483 ntAPPRIS P3 TSL 2 BASIC6.19□□□□□ -1.42
COL5A3P25940 ZNF836-204ENST00000597252 3209 ntAPPRIS P2 TSL 2 BASIC6.19□□□□□ -1.42
COL5A3P25940 MAMDC2-AS1-201ENST00000377178 1504 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
COL5A3P25940 ABL2-201ENST00000344730 6910 ntAPPRIS ALT2 TSL 1 (best) BASIC6.19□□□□□ -1.42
COL5A3P25940 PNPLA4-203ENST00000444736 2752 ntAPPRIS P1 TSL 4 BASIC6.19□□□□□ -1.42
COL5A3P25940 OR5A2-201ENST00000302040 6318 ntAPPRIS P1 BASIC6.19□□□□□ -1.42
COL5A3P25940 AC107953.2-201ENST00000518362 1408 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
COL5A3P25940 INTS2-207ENST00000617492 5805 ntTSL 5 BASIC6.19□□□□□ -1.42
COL5A3P25940 TLR4-201ENST00000355622 4844 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
COL5A3P25940 C9orf72-203ENST00000380003 3200 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
COL5A3P25940 ZNF573-208ENST00000536220 2257 ntAPPRIS P1 TSL 3 BASIC6.19□□□□□ -1.42
COL5A3P25940 UQCRC2P1-201ENST00000417777 1332 ntBASIC6.19□□□□□ -1.42
COL5A3P25940 ATF7IP-222ENST00000544627 4847 ntAPPRIS ALT2 TSL 1 (best) BASIC6.19□□□□□ -1.42
COL5A3P25940 CCDC171-201ENST00000380701 6512 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
COL5A3P25940 AC016687.3-202ENST00000505018 2404 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
COL5A3P25940 AC012519.1-201ENST00000424588 610 ntBASIC6.19□□□□□ -1.42
COL5A3P25940 LINC01731-201ENST00000428035 420 ntTSL 3 BASIC6.19□□□□□ -1.42
COL5A3P25940 NPM1P33-201ENST00000438918 872 ntBASIC6.19□□□□□ -1.42
COL5A3P25940 Z95152.1-201ENST00000453556 656 ntBASIC6.19□□□□□ -1.42
COL5A3P25940 AL136537.1-202ENST00000501725 430 ntTSL 3 BASIC6.19□□□□□ -1.42
COL5A3P25940 AC021193.1-201ENST00000511607 420 ntBASIC6.19□□□□□ -1.42
COL5A3P25940 SNORA70.11-201ENST00000515987 138 ntBASIC6.19□□□□□ -1.42
COL5A3P25940 SNORA70.13-201ENST00000516116 138 ntBASIC6.19□□□□□ -1.42
COL5A3P25940 AC027369.5-201ENST00000533838 755 ntBASIC6.19□□□□□ -1.42
COL5A3P25940 AC068831.4-201ENST00000556118 109 ntBASIC6.19□□□□□ -1.42
COL5A3P25940 AC025857.2-201ENST00000602711 238 ntBASIC6.19□□□□□ -1.42
COL5A3P25940 AL392048.1-201ENST00000613946 534 ntBASIC6.19□□□□□ -1.42
COL5A3P25940 PIGK-203ENST00000445065 4318 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
COL5A3P25940 RGS4-202ENST00000367908 2606 ntTSL 2 BASIC6.19□□□□□ -1.42
COL5A3P25940 OFD1P9Y-201ENST00000417699 1491 ntBASIC6.18□□□□□ -1.42
COL5A3P25940 ZNF230-201ENST00000429154 4115 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
COL5A3P25940 FZD6-205ENST00000522566 3719 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
COL5A3P25940 ADGRL2-222ENST00000627151 5789 ntTSL 5 BASIC6.18□□□□□ -1.42
COL5A3P25940 GRIK2-205ENST00000369138 4921 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
COL5A3P25940 ZNF571-201ENST00000328550 4113 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
COL5A3P25940 HSD17B11-201ENST00000358290 1885 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
COL5A3P25940 HNRNPR-210ENST00000478691 7646 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
COL5A3P25940 CDON-202ENST00000392693 9138 ntAPPRIS ALT2 TSL 1 (best) BASIC6.18□□□□□ -1.42
COL5A3P25940 AP000547.3-204ENST00000588548 2523 ntBASIC6.18□□□□□ -1.42
COL5A3P25940 BTLA-201ENST00000334529 3213 ntAPPRIS P3 TSL 1 (best) BASIC6.18□□□□□ -1.42
COL5A3P25940 EXOC1-202ENST00000349598 3248 ntAPPRIS ALT1 TSL 2 BASIC6.18□□□□□ -1.42
COL5A3P25940 SNORA48.4-201ENST00000391089 134 ntBASIC6.18□□□□□ -1.42
COL5A3P25940 COX7B2-202ENST00000396533 617 ntAPPRIS P2 TSL 1 (best) BASIC6.18□□□□□ -1.42
COL5A3P25940 RPEP3-201ENST00000425462 676 ntBASIC6.18□□□□□ -1.42
COL5A3P25940 AL031428.1-201ENST00000427154 666 ntTSL 2 BASIC6.18□□□□□ -1.42
COL5A3P25940 AC092811.1-201ENST00000428642 397 ntTSL 3 BASIC6.18□□□□□ -1.42
COL5A3P25940 AC016772.1-201ENST00000444170 1261 ntBASIC6.18□□□□□ -1.42
COL5A3P25940 AC091180.1-201ENST00000462104 372 ntBASIC6.18□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 80.5 ms