Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 OR6C75-202ENST00000641576 4569 ntAPPRIS P1 BASIC5.02□□□□□ -1.61
COL6A3P12111 KATNA1-202ENST00000335647 1684 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
COL6A3P12111 MYOF-201ENST00000358334 6680 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
COL6A3P12111 KIF13A-205ENST00000378843 5707 ntAPPRIS ALT2 TSL 1 (best) BASIC5.02□□□□□ -1.61
COL6A3P12111 RMDN2-201ENST00000234195 1985 ntTSL 2 BASIC5.02□□□□□ -1.61
COL6A3P12111 MAP9-208ENST00000515654 2044 ntTSL 5 BASIC5.02□□□□□ -1.61
COL6A3P12111 ARHGEF9-229ENST00000637040 5001 ntTSL 5 BASIC5.02□□□□□ -1.61
COL6A3P12111 SELL-201ENST00000236147 2436 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
COL6A3P12111 SCUBE3-201ENST00000274938 7356 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
COL6A3P12111 UNC5D-206ENST00000453357 7002 ntAPPRIS ALT2 TSL 1 (best) BASIC5.02□□□□□ -1.61
COL6A3P12111 LIX1L-AS1-201ENST00000366105 377 ntTSL 5 BASIC5.02□□□□□ -1.61
COL6A3P12111 AL449043.1-202ENST00000427318 582 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
COL6A3P12111 RN7SL188P-201ENST00000469842 285 ntBASIC5.02□□□□□ -1.61
COL6A3P12111 AC026403.1-201ENST00000518938 295 ntBASIC5.02□□□□□ -1.61
COL6A3P12111 TRMT10BP1-201ENST00000519377 943 ntBASIC5.02□□□□□ -1.61
COL6A3P12111 AC013549.2-201ENST00000526953 489 ntTSL 3 BASIC5.02□□□□□ -1.61
COL6A3P12111 OR4A43P-201ENST00000532938 908 ntBASIC5.02□□□□□ -1.61
COL6A3P12111 AC011443.1-201ENST00000599484 365 ntTSL 3 BASIC5.02□□□□□ -1.61
COL6A3P12111 RDM1-226ENST00000619828 687 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
COL6A3P12111 AC112484.5-201ENST00000624189 228 ntBASIC5.02□□□□□ -1.61
COL6A3P12111 CCT6B-203ENST00000436961 1639 ntTSL 2 BASIC5.02□□□□□ -1.61
COL6A3P12111 ZNF407-207ENST00000582337 5662 ntTSL 5 BASIC5.02□□□□□ -1.61
COL6A3P12111 CASC19-204ENST00000641001 2055 ntBASIC5.02□□□□□ -1.61
COL6A3P12111 MKKS-202ENST00000399054 2663 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
COL6A3P12111 ESRRG-219ENST00000487276 3015 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
COL6A3P12111 SLITRK4-202ENST00000356928 3074 ntAPPRIS P1 TSL 2 BASIC5.02□□□□□ -1.61
COL6A3P12111 AC004803.1-201ENST00000503602 3207 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
COL6A3P12111 AL627309.5-201ENST00000484859 4860 ntTSL 5 BASIC5.02□□□□□ -1.61
COL6A3P12111 HMGB1-203ENST00000341423 5485 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
COL6A3P12111 PNPLA8-204ENST00000426128 4268 ntTSL 5 BASIC5.02□□□□□ -1.61
COL6A3P12111 DCN-218ENST00000551354 2924 ntTSL 3 BASIC5.02□□□□□ -1.61
COL6A3P12111 THEMIS-206ENST00000630369 2786 ntAPPRIS ALT2 TSL 1 (best) BASIC5.02□□□□□ -1.61
COL6A3P12111 ERC2-201ENST00000288221 6138 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
COL6A3P12111 SVEP1-202ENST00000374469 12194 ntAPPRIS P2 TSL 5 BASIC5.02□□□□□ -1.61
COL6A3P12111 COMMD6-204ENST00000377619 594 ntTSL 2 BASIC5.02□□□□□ -1.61
COL6A3P12111 RPS27AP11-201ENST00000402798 447 ntBASIC5.02□□□□□ -1.61
COL6A3P12111 OR4K6P-201ENST00000416478 897 ntBASIC5.02□□□□□ -1.61
COL6A3P12111 AC233982.1-201ENST00000451247 436 ntBASIC5.02□□□□□ -1.61
COL6A3P12111 OR13C1P-201ENST00000457612 963 ntBASIC5.02□□□□□ -1.61
COL6A3P12111 AC090692.1-202ENST00000525363 607 ntTSL 4 BASIC5.02□□□□□ -1.61
COL6A3P12111 AP001972.1-201ENST00000529215 506 ntTSL 2 BASIC5.02□□□□□ -1.61
COL6A3P12111 AF123462.1-201ENST00000554307 446 ntTSL 3 BASIC5.02□□□□□ -1.61
COL6A3P12111 SORBS1-205ENST00000371227 7279 ntAPPRIS ALT2 TSL 1 (best) BASIC5.02□□□□□ -1.61
COL6A3P12111 ZNF540-201ENST00000316433 3099 ntAPPRIS P3 TSL 1 (best) BASIC5.02□□□□□ -1.61
COL6A3P12111 MSR1-204ENST00000381998 2826 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
COL6A3P12111 ZNF283-203ENST00000588797 2428 ntTSL 2 BASIC5.01□□□□□ -1.61
COL6A3P12111 OR10K1-203ENST00000641432 3775 ntAPPRIS P1 BASIC5.01□□□□□ -1.61
COL6A3P12111 SLC1A3-202ENST00000381918 3652 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
COL6A3P12111 MAP3K7-203ENST00000369327 4558 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
COL6A3P12111 LRRC37A6P-202ENST00000448648 5444 ntBASIC5.01□□□□□ -1.61
COL6A3P12111 TBC1D15-217ENST00000550746 6184 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
COL6A3P12111 NRCAM-202ENST00000379022 3900 ntTSL 5 BASIC5.01□□□□□ -1.61
COL6A3P12111 Z99129.3-201ENST00000624363 6430 ntTSL 2 BASIC5.01□□□□□ -1.61
COL6A3P12111 HIPK1-201ENST00000340480 6997 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
COL6A3P12111 MYH4-201ENST00000255381 6016 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
COL6A3P12111 OR5P1P-201ENST00000299512 925 ntBASIC5.01□□□□□ -1.61
COL6A3P12111 AL451142.1-201ENST00000375867 775 ntBASIC5.01□□□□□ -1.61
COL6A3P12111 MIR34B-201ENST00000385076 84 ntBASIC5.01□□□□□ -1.61
COL6A3P12111 AL136116.2-201ENST00000404020 785 ntBASIC5.01□□□□□ -1.61
COL6A3P12111 TMA16P2-201ENST00000413187 601 ntBASIC5.01□□□□□ -1.61
COL6A3P12111 COX6CP15-201ENST00000426313 211 ntBASIC5.01□□□□□ -1.61
COL6A3P12111 AC034234.1-201ENST00000502993 465 ntTSL 3 BASIC5.01□□□□□ -1.61
COL6A3P12111 AF111169.4-202ENST00000553507 262 ntTSL 3 BASIC5.01□□□□□ -1.61
COL6A3P12111 DIAPH2-AS1-204ENST00000579945 974 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
COL6A3P12111 DCLRE1A-201ENST00000361384 4468 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
COL6A3P12111 L3MBTL3-209ENST00000533560 3165 ntAPPRIS ALT2 TSL 1 (best) BASIC5.01□□□□□ -1.61
COL6A3P12111 HMBOX1-202ENST00000355231 1694 ntTSL 5 BASIC5.01□□□□□ -1.61
COL6A3P12111 MPHOSPH9-211ENST00000541076 6136 ntAPPRIS ALT2 TSL 5 BASIC5.01□□□□□ -1.61
COL6A3P12111 LNPEP-201ENST00000231368 12752 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
COL6A3P12111 ZCCHC8-201ENST00000536306 2904 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
COL6A3P12111 OR1L8-201ENST00000304865 1061 ntAPPRIS P1 BASIC5.01□□□□□ -1.61
COL6A3P12111 RNA5SP345-201ENST00000410646 108 ntBASIC5.01□□□□□ -1.61
COL6A3P12111 AC068533.1-201ENST00000418542 415 ntBASIC5.01□□□□□ -1.61
COL6A3P12111 AC073521.1-201ENST00000418679 625 ntTSL 3 BASIC5.01□□□□□ -1.61
COL6A3P12111 MACROD2-IT1-201ENST00000448536 665 ntTSL 5 BASIC5.01□□□□□ -1.61
COL6A3P12111 RN7SL429P-201ENST00000479090 223 ntBASIC5.01□□□□□ -1.61
COL6A3P12111 RN7SL489P-201ENST00000486185 223 ntBASIC5.01□□□□□ -1.61
COL6A3P12111 RN7SL327P-201ENST00000488659 223 ntBASIC5.01□□□□□ -1.61
COL6A3P12111 LINC02146-201ENST00000504244 509 ntTSL 3 BASIC5.01□□□□□ -1.61
COL6A3P12111 TEX12-202ENST00000530752 787 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
COL6A3P12111 AP003031.2-202ENST00000533590 572 ntTSL 4 BASIC5.01□□□□□ -1.61
COL6A3P12111 RN7SL853P-201ENST00000617250 223 ntBASIC5.01□□□□□ -1.61
COL6A3P12111 AC009093.8-201ENST00000641769 292 ntBASIC5.01□□□□□ -1.61
COL6A3P12111 AC106871.1-201ENST00000568324 3102 ntBASIC5.01□□□□□ -1.61
COL6A3P12111 MRRF-202ENST00000344641 9826 ntAPPRIS P1 TSL 2 BASIC5.01□□□□□ -1.61
COL6A3P12111 AC008938.1-201ENST00000566929 6510 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
COL6A3P12111 RAPGEF4-204ENST00000409036 3975 ntTSL 5 BASIC5.01□□□□□ -1.61
COL6A3P12111 OSGEPL1-201ENST00000264151 1885 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
COL6A3P12111 ANKRD44-201ENST00000282272 5147 ntAPPRIS P1 TSL 5 BASIC5.01□□□□□ -1.61
COL6A3P12111 AL590378.1-201ENST00000426818 303 ntTSL 3 BASIC5□□□□□ -1.61
COL6A3P12111 CDH12P2-201ENST00000504393 298 ntBASIC5□□□□□ -1.61
COL6A3P12111 GAS1RR-201ENST00000415801 4387 ntTSL 1 (best) BASIC5□□□□□ -1.61
COL6A3P12111 AC009951.1-201ENST00000623674 2614 ntBASIC5□□□□□ -1.61
COL6A3P12111 TMOD2-201ENST00000249700 9191 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
COL6A3P12111 ATP2C1-212ENST00000507488 3579 ntAPPRIS ALT2 TSL 2 BASIC5□□□□□ -1.61
COL6A3P12111 ERVH48-1-201ENST00000447535 2790 ntTSL 1 (best) BASIC5□□□□□ -1.61
COL6A3P12111 VNN3-207ENST00000425515 1761 ntTSL 1 (best) BASIC5□□□□□ -1.61
COL6A3P12111 ZNF559-ZNF177-201ENST00000434737 2340 ntAPPRIS ALT2 TSL 2 BASIC5□□□□□ -1.61
COL6A3P12111 IRAK1BP1-204ENST00000607739 1387 ntTSL 2 BASIC5□□□□□ -1.61
COL6A3P12111 ZNF638-201ENST00000264447 6505 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 88.2 ms